C9orf16

General Information

Gene Name : C9orf16
Gene ID : ENSG00000171159.4
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C9orf16)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C9orf16	ENSG00000171159.4	1.80	7.66	4.73	ENCSR000AEF
HepG2	C9orf16	ENSG00000171159.4	12.73	1.44	7.08	ENCSR985KAT
K562	C9orf16	ENSG00000171159.4	130.82	20.25	75.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C9orf16 is not avaliable on ENCORE database.

Proteins bound to RNA

C9orf16 RNA is bound by 10 proteins.

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eCLIP assay for C9orf16 is not avaliable on ENCORE database.

10 proteins are bound to C9orf16 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	130925913	130925976	+	3'-UTR	5.40938	400.00000	K562	PABPC4
chr9	130925834	130925913	+	3'-UTR,CDS	5.68936	62.12515	K562	PABPC4
chr9	130926023	130926121	+	3'-UTR	4.82184	60.64834	K562	PABPC4
chr9	130925976	130926023	+	3'-UTR	5.40409	54.05471	K562	PABPC4
chr9	130922711	130922764	+	CDS	5.53826	49.24062	K562	PABPC4
chr9	130926076	130926140	+	3'-UTR	4.50712	41.69919	K562	YBX3
chr9	130926023	130926084	+	3'-UTR	6.04298	32.08051	K562	PCBP1
chr9	130926084	130926174	+	3'-UTR	6.58671	25.67841	K562	PCBP1
chr9	130926052	130926075	+	3'-UTR	3.51956	21.78521	K562	YBX3
chr9	130922656	130922706	+	5'-UTR,CDS	4.12932	21.71699	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for C9orf16 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C9orf16 is not available on ENCORE database.
128 RBPs can affect the levels of C9orf16.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.

128 RBPs can affect the gene expression of C9orf16 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C9orf16	ENSG00000171159.4	342.48820	59.75900	2.51870	43.54940	41.77340	HepG2	PUM1
C9orf16	ENSG00000171159.4	1025.03090	362.30550	1.50030	30.23190	26.18430	K562	SRFBP1
C9orf16	ENSG00000171159.4	252.55710	34.86560	2.85660	26.58280	25.05910	HepG2	TRIM56
C9orf16	ENSG00000171159.4	251.93970	63.21190	1.99470	22.30880	20.81640	HepG2	SUCLG1
C9orf16	ENSG00000171159.4	673.66060	263.84770	1.35220	22.88670	20.38500	K562	TIA1
C9orf16	ENSG00000171159.4	411.35870	110.62580	1.89460	21.29740	19.73030	HepG2	DDX3X
C9orf16	ENSG00000171159.4	2260.58900	1269.92480	0.83190	21.33660	19.63420	K562	RBM15
C9orf16	ENSG00000171159.4	688.13110	273.51110	1.33100	19.56750	17.36210	K562	TARDBP
C9orf16	ENSG00000171159.4	810.39970	382.21070	1.08420	17.18180	14.72500	K562	RCC2
C9orf16	ENSG00000171159.4	607.53540	255.35310	1.25040	17.27890	14.52400	K562	SRSF5
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 147 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.

18 RBPs can affect the splicing of C9orf16 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	-0.08900	0.00000	0.00002	excluded	K562	AKAP8L
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	0.61200	0.00000	0.00006	included	K562	U2AF1
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	0.22500	0.00000	0.00362	included	K562	LARP7
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	-0.09500	0.00000	0.00002	excluded	K562	UTP18
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	-0.09600	0.00000	0.00001	excluded	K562	RBM15
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	0.22400	0.00000	0.00008	included	K562	HNRNPC
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	-0.06100	0.00002	0.00132	excluded	K562	HNRNPU
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130925231	130922592	130922765	130925721	130926169	-0.07900	0.00003	0.00139	excluded	K562	AGGF1
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130924623	130922637	130922765	130925721	130925825	-0.08800	0.00004	0.01339	excluded	K562	NPM1
SE	C9orf16	ENSG00000171159.4	chr9	+	130924282	130924394	130922738	130922765	130925721	130926016	0.29800	0.00007	0.00282	included	HepG2	HNRNPK

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C9orf16

General Information

Functions

Localization

Domains (AlphaFold: C9orf16)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C9orf16 is not avaliable on ENCORE database.

10 proteins are bound to C9orf16 RNA:

eCLIP assay for C9orf16 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.

128 RBPs can affect the gene expression of C9orf16 :

The Knockdown/knockout RNA-Seq assay for C9orf16 is not available on ENCORE database.

18 RBPs can affect the splicing of C9orf16 :

The Knockdown/knockout RNA-Seq assay for C9orf16 is not avaliable on ENCORE database.