C4BPB

General Information

Gene Name : C4BPB
Gene ID : ENSG00000123843.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C4BPB)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C4BPB	ENSG00000123843.12	0.04	0.28	0.16	ENCSR000AEF
HepG2	C4BPB	ENSG00000123843.12	65.50	75.20	70.35	ENCSR985KAT
K562	C4BPB	ENSG00000123843.12	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C4BPB is not avaliable on ENCORE database.

Proteins bound to RNA

C4BPB RNA is bound by 12 proteins.

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eCLIP assay for C4BPB is not avaliable on ENCORE database.

12 proteins are bound to C4BPB RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	207269567	207269686	+	intron-Distal	7.32530	76.72421	HepG2	QKI
chr1	207269855	207269907	+	CDS,intron-Proximal	4.72110	21.63933	HepG2	U2AF2
chr1	207269811	207269896	+	CDS,intron-Proximal	4.16131	17.38659	HepG2	SF3A3
chr1	207269686	207269762	+	intron-Distal	4.52306	16.09826	HepG2	QKI
chr1	207265088	207265167	+	CDS,intron-Proximal	4.57248	14.75354	HepG2	SND1
chr1	207269436	207269476	+	intron-Distal	3.89264	10.83393	HepG2	U2AF2
chr1	207271548	207271612	+	CDS,intron-Proximal	4.22509	10.24470	HepG2	BCLAF1
chr1	207264988	207265053	+	CDS,intron-Proximal	5.37106	10.06265	HepG2	PPIG
chr1	207263772	207263827	+	CDS,intron-Proximal	4.37837	8.98365	HepG2	PPIG
chr1	207271544	207271612	+	CDS,intron-Proximal	3.11106	8.74848	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for C4BPB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C4BPB is not available on ENCORE database.
101 RBPs can affect the levels of C4BPB.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.

101 RBPs can affect the gene expression of C4BPB :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C4BPB	ENSG00000123843.8	380.55760	2734.42680	-2.84510	88.61620	86.33780	HepG2	AKAP1
C4BPB	ENSG00000123843.8	613.99870	2161.15650	-1.81550	78.77600	76.77520	HepG2	RBM22
C4BPB	ENSG00000123843.8	484.55570	1499.27590	-1.62950	73.20030	71.17080	HepG2	ACO1
C4BPB	ENSG00000123843.8	4253.15910	2119.21120	1.00490	50.59280	49.07260	HepG2	SSB
C4BPB	ENSG00000123843.8	4191.39230	2107.97390	0.99150	44.80360	42.31680	HepG2	EIF4G1
C4BPB	ENSG00000123843.8	1193.11000	2440.90530	-1.03270	43.43850	42.07810	HepG2	SRFBP1
C4BPB	ENSG00000123843.8	2512.90300	1090.61190	1.20410	30.39410	27.86860	HepG2	DHX30
C4BPB	ENSG00000123843.8	1314.83140	2407.75730	-0.87280	28.15690	26.80220	HepG2	NELFE
C4BPB	ENSG00000123843.8	596.95640	1219.79170	-1.03090	26.65760	25.09380	HepG2	UTP3
C4BPB	ENSG00000123843.8	1273.34300	2146.96360	-0.75370	26.29200	24.84140	HepG2	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.

5 RBPs can affect the splicing of C4BPB :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	C4BPB	ENSG00000123843.8	chr1	+	207262443	207262503			207262238	207262291	207262826	207262934	-0.20200	0.00000	0.00005	excluded	HepG2	SRSF1
A5SS	C4BPB	ENSG00000123843.8	chr1	+	207262627	207262740			207262627	207262706	207262826	207262934	0.19900	0.00000	0.00028	longer	HepG2	DDX3X
MXE	C4BPB	ENSG00000123843.8	chr1	+	207262826	207262934	207263652	207263826	207262238	207262291	207264988	207265217	0.08500	0.00000	0.00019	1included	HepG2	SRSF1
SE	C4BPB	ENSG00000123843.8	chr1	+	207269866	207269960			207264988	207265165	207271494	207271609	-0.10400	0.00005	0.00143	excluded	HepG2	U2AF1
SE	C4BPB	ENSG00000123843.8	chr1	+	207262661	207262706			207262238	207262291	207262826	207262934	-0.25200	0.00027	0.02447	excluded	HepG2	TIAL1
SE	C4BPB	ENSG00000123843.8	chr1	+	207262661	207262706			207262238	207262291	207262826	207263021	0.20300	0.00157	0.05531	included	HepG2	HNRNPC

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C4BPB

General Information

Functions

Localization

Domains (AlphaFold: C4BPB)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C4BPB is not avaliable on ENCORE database.

12 proteins are bound to C4BPB RNA:

eCLIP assay for C4BPB is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.

101 RBPs can affect the gene expression of C4BPB :

The Knockdown/knockout RNA-Seq assay for C4BPB is not available on ENCORE database.

5 RBPs can affect the splicing of C4BPB :

The Knockdown/knockout RNA-Seq assay for C4BPB is not avaliable on ENCORE database.