BRWD3

General Information

Gene Name : BRWD3
Gene ID : ENSG00000165288.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BRWD3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BRWD3	ENSG00000165288.10	12.94	7.10	10.02	ENCSR000AEF
HepG2	BRWD3	ENSG00000165288.10	4.69	4.77	4.73	ENCSR985KAT
K562	BRWD3	ENSG00000165288.10	4.07	3.87	3.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BRWD3 is not avaliable on ENCORE database.

Proteins bound to RNA

BRWD3 RNA is bound by 20 proteins.

CanvasJS.com

eCLIP assay for BRWD3 is not avaliable on ENCORE database.

20 proteins are bound to BRWD3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	79931857	79931937	-	3'-UTR,intron-Distal	5.06254	43.50418	HepG2	HNRNPL
chrX	79987945	79988044	-	intron-Distal	5.70515	34.84864	HepG2	PTBP1
chrX	79931838	79931907	-	3'-UTR,intron-Distal	4.55455	26.44271	K562	HNRNPL
chrX	79987993	79988095	-	intron-Distal	5.60023	26.19104	K562	PTBP1
chrX	79931844	79931857	-	3'-UTR,intron-Distal	4.34983	23.53617	HepG2	HNRNPL
chrX	79927849	79927920	-	3'-UTR,intron-Distal	6.88776	20.19514	HepG2	PCBP2
chrX	80065149	80065186	-	5'-UTR,intron-Distal,intron-Proximal	4.86606	18.36989	HepG2	PTBP1
chrX	79931753	79931838	-	3'-UTR,intron-Distal	4.31218	18.15763	K562	HNRNPL
chrX	80065135	80065186	-	5'-UTR,intron-Distal,intron-Proximal	4.43256	16.21411	K562	PTBP1
chrX	79931809	79931844	-	3'-UTR,intron-Distal	4.13112	14.84612	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 72 entries

eCLIP assay for BRWD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BRWD3 is not available on ENCORE database.
121 RBPs can affect the levels of BRWD3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BRWD3 is not available on ENCORE database.

121 RBPs can affect the gene expression of BRWD3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BRWD3	ENSG00000165288.10	1241.83800	2409.74360	-0.95640	35.19010	33.92380	HepG2	SRSF1
BRWD3	ENSG00000165288.10	1154.70550	2308.59400	-0.99950	29.53570	27.96620	HepG2	SF3B4
BRWD3	ENSG00000165288.10	1047.54860	1973.42000	-0.91370	29.59430	27.95040	HepG2	UTP3
BRWD3	ENSG00000165288.10	493.54960	1284.84720	-1.38030	26.31780	25.07000	HepG2	TIAL1
BRWD3	ENSG00000165288.10	793.42450	2553.63440	-1.68640	26.09900	24.23240	HepG2	MAGOH
BRWD3	ENSG00000165288.10	1228.07110	2217.56220	-0.85260	25.32280	23.98780	HepG2	PTBP1
BRWD3	ENSG00000165288.10	1406.91150	2467.85300	-0.81070	24.08440	22.80330	HepG2	NELFE
BRWD3	ENSG00000165288.10	1459.73430	2248.02990	-0.62300	19.95890	18.82100	HepG2	ZNF622
BRWD3	ENSG00000165288.10	2751.70860	1810.31690	0.60400	18.36680	17.37780	HepG2	SRFBP1
BRWD3	ENSG00000165288.10	1034.32890	2568.03020	-1.31200	18.28510	16.77870	HepG2	MATR3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BRWD3 is not available on ENCORE database.

6 RBPs can affect the splicing of BRWD3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BRWD3	ENSG00000165288.10	chrX	-	79962925	79963002			79960176	79960345	79971655	79971749	-0.07400	0.00001	0.00031	excluded	HepG2	U2AF2
SE	BRWD3	ENSG00000165288.10	chrX	-	79986586	79986710			79985414	79985519	79988954	79988995	0.30600	0.00007	0.00137	included	HepG2	U2AF2
MXE	BRWD3	ENSG00000165288.10	chrX	-	79962925	79963002	79964926	79965076	79960176	79960345	79971655	79971749	-0.10800	0.00011	0.02556	2included	HepG2	RBM5
SE	BRWD3	ENSG00000165288.10	chrX	-	79986586	79986710			79985414	79985519	79988954	79988995	0.27200	0.00173	0.03241	included	HepG2	U2AF1
MXE	BRWD3	ENSG00000165288.10	chrX	-	79962925	79963002	79964926	79965076	79960176	79960345	79971655	79971749	-0.06700	0.00307	0.09388	2included	HepG2	DROSHA
SE	BRWD3	ENSG00000165288.10	chrX	-	79964926	79965076			79962925	79963002	79971655	79971749	-0.21200	0.00432	0.08298	excluded	K562	AGGF1
A3SS	BRWD3	ENSG00000165288.10	chrX	-	79948438	79948617			79948438	79948550	79951406	79951489	0.08400	0.01128	0.05858	longer	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BRWD3

General Information

Functions

Localization

Domains (AlphaFold: BRWD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BRWD3 is not avaliable on ENCORE database.

20 proteins are bound to BRWD3 RNA:

eCLIP assay for BRWD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BRWD3 is not available on ENCORE database.

121 RBPs can affect the gene expression of BRWD3 :

The Knockdown/knockout RNA-Seq assay for BRWD3 is not available on ENCORE database.

6 RBPs can affect the splicing of BRWD3 :

The Knockdown/knockout RNA-Seq assay for BRWD3 is not avaliable on ENCORE database.