AVL9

General Information

Gene Name : AVL9
Gene ID : ENSG00000105778.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AVL9)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AVL9	ENSG00000105778.18	14.29	13.11	13.70	ENCSR000AEF
HepG2	AVL9	ENSG00000105778.18	13.71	20.04	16.88	ENCSR985KAT
K562	AVL9	ENSG00000105778.18	22.53	19.12	20.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AVL9 is not avaliable on ENCORE database.

Proteins bound to RNA

AVL9 RNA is bound by 39 proteins.

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eCLIP assay for AVL9 is not avaliable on ENCORE database.

39 proteins are bound to AVL9 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	32768377	32768422	+	intron-Distal	8.25402	67.15262	K562	DGCR8
chr7	32768422	32768432	+	intron-Distal	8.17060	65.18858	K562	DGCR8
chr7	32768432	32768436	+	intron-Distal	8.04462	61.26163	K562	DGCR8
chr7	32997029	32997103	+	5'-UTR,intron-Distal	5.61096	40.56143	HepG2	DDX3X
chr7	32997226	32997357	+	5'-UTR,CDS,intron-Distal	5.84785	33.45257	HepG2	DDX3X
chr7	32997107	32997170	+	5'-UTR,intron-Distal	4.83771	24.08178	HepG2	DDX3X
chr7	33045361	33045447	+	3'-UTR,intron-Distal	6.37904	23.84245	HepG2	UPF1
chr7	33045718	33045750	+	3'-UTR,intron-Distal	4.63871	21.58705	HepG2	UPF1
chr7	32997170	32997226	+	5'-UTR,CDS,intron-Distal	5.18268	19.75640	HepG2	DDX3X
chr7	33045750	33045768	+	3'-UTR,intron-Distal	4.50809	19.30742	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 123 entries

eCLIP assay for AVL9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AVL9 is not available on ENCORE database.
91 RBPs can affect the levels of AVL9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AVL9 is not available on ENCORE database.

91 RBPs can affect the gene expression of AVL9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AVL9	ENSG00000105778.13	4994.08190	2358.98980	1.08200	66.52350	64.90790	HepG2	SRFBP1
AVL9	ENSG00000105778.13	3662.00360	2176.48110	0.75050	25.90080	24.19020	HepG2	AUH
AVL9	ENSG00000105778.13	2080.80280	1259.48940	0.72420	22.99180	21.39300	HepG2	ZC3H8
AVL9	ENSG00000105778.13	3342.88740	2088.57530	0.67850	17.80280	16.72010	HepG2	RBM22
AVL9	ENSG00000105778.13	1188.91060	1788.73520	-0.58930	15.64150	14.15640	HepG2	HNRNPL
AVL9	ENSG00000105778.13	590.00650	1295.68080	-1.13490	14.90960	12.61740	HepG2	BCCIP
AVL9	ENSG00000105778.13	3594.99490	2498.83470	0.52460	13.43730	12.27680	HepG2	ETF1
AVL9	ENSG00000105778.13	720.46420	1298.27500	-0.84960	12.94070	11.71330	HepG2	HNRNPA1
AVL9	ENSG00000105778.13	1995.63360	3010.57650	-0.59320	12.34470	11.09590	K562	RBM15
AVL9	ENSG00000105778.13	1863.52050	3089.98690	-0.72960	11.62980	10.56520	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AVL9 is not available on ENCORE database.

11 RBPs can affect the splicing of AVL9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AVL9	ENSG00000105778.13	chr7	+	32619830	32619884			32615566	32615684	32620413	32620502	-0.26500	0.00000	0.00000	excluded	K562	SF3B4
SE	AVL9	ENSG00000105778.13	chr7	+	32619830	32619884			32615566	32615684	32620413	32620502	-0.24600	0.00000	0.00015	excluded	HepG2	NCBP2
SE	AVL9	ENSG00000105778.13	chr7	+	32619830	32619884			32615566	32615684	32620413	32620502	-0.36900	0.00000	0.00000	excluded	HepG2	SF3A3
SE	AVL9	ENSG00000105778.13	chr7	+	32619830	32619884			32615566	32615684	32620413	32620502	-0.11100	0.00006	0.00177	excluded	K562	U2AF2
SE	AVL9	ENSG00000105778.13	chr7	+	32615566	32615684			32612810	32613030	32620413	32620502	-0.11700	0.00026	0.00605	excluded	K562	HNRNPC
MXE	AVL9	ENSG00000105778.13	chr7	+	32582752	32582873	32584305	32584391	32535137	32535414	32588458	32588530	0.23500	0.00079	0.02417	1included	HepG2	MATR3
MXE	AVL9	ENSG00000105778.13	chr7	+	32584305	32584391	32588458	32588530	32582866	32582873	32590945	32591035	-0.20300	0.00114	0.02359	2included	HepG2	U2AF1
MXE	AVL9	ENSG00000105778.13	chr7	+	32582752	32582873	32584305	32584391	32535137	32535414	32588458	32588530	0.15000	0.00120	0.04115	1included	K562	AGGF1
MXE	AVL9	ENSG00000105778.13	chr7	+	32582752	32582873	32584305	32584391	32535137	32535414	32588458	32588530	0.19400	0.00123	0.04383	1included	HepG2	NCBP2
MXE	AVL9	ENSG00000105778.13	chr7	+	32615566	32615684	32619830	32619884	32612810	32613030	32620413	32620502	-0.11400	0.00145	0.02710	2included	K562	HNRNPC

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AVL9

General Information

Functions

Localization

Domains (AlphaFold: AVL9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AVL9 is not avaliable on ENCORE database.

39 proteins are bound to AVL9 RNA:

eCLIP assay for AVL9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AVL9 is not available on ENCORE database.

91 RBPs can affect the gene expression of AVL9 :

The Knockdown/knockout RNA-Seq assay for AVL9 is not available on ENCORE database.

11 RBPs can affect the splicing of AVL9 :

The Knockdown/knockout RNA-Seq assay for AVL9 is not avaliable on ENCORE database.