ARNT

General Information

Gene Name : ARNT
Gene ID : ENSG00000143437.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ARNT)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ARNT	ENSG00000143437.20	17.29	16.76	17.02	ENCSR000AEF
HepG2	ARNT	ENSG00000143437.20	14.57	16.23	15.40	ENCSR985KAT
K562	ARNT	ENSG00000143437.20	24.19	23.51	23.85	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ARNT is not avaliable on ENCORE database.

Proteins bound to RNA

ARNT RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for ARNT is not avaliable on ENCORE database.

26 proteins are bound to ARNT RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	150814962	150815056	-	intron-Distal,intron-Proximal	6.68256	23.40769	HepG2	U2AF2
chr1	150783891	150783989	-	3'-UTR,intron-Distal	5.11329	17.44933	K562	TARDBP
chr1	150814934	150815057	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.14592	14.07413	K562	PTBP1
chr1	150784318	150784411	-	3'-UTR,intron-Distal,intron-Proximal	5.05231	12.47085	HepG2	PCBP2
chr1	150815126	150815206	-	intron-Distal	4.74034	11.35904	HepG2	U2AF2
chr1	150784143	150784237	-	3'-UTR,intron-Distal,intron-Proximal	4.62236	10.34406	K562	LIN28B
chr1	150814886	150814959	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82235	9.51959	K562	U2AF2
chr1	150815266	150815355	-	intron-Distal	4.34629	8.98664	K562	KHSRP
chr1	150783324	150783398	-	3'-UTR,intron-Distal,intron-Proximal	4.14783	8.97722	K562	IGF2BP1
chr1	150804301	150804380	-	CDS,intron-Distal,intron-Proximal	4.40553	8.59814	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 63 entries

eCLIP assay for ARNT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ARNT is not available on ENCORE database.
74 RBPs can affect the levels of ARNT.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ARNT is not available on ENCORE database.

74 RBPs can affect the gene expression of ARNT :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ARNT	ENSG00000143437.16	2488.69650	1153.20340	1.10960	48.37740	46.88030	HepG2	SSB
ARNT	ENSG00000143437.16	1719.60920	989.19350	0.79770	24.31020	22.67740	HepG2	ZC3H8
ARNT	ENSG00000143437.16	5014.44320	3292.70610	0.60670	20.38650	18.96380	K562	AGGF1
ARNT	ENSG00000143437.16	814.08680	1359.11170	-0.73940	15.69360	14.43960	HepG2	UTP3
ARNT	ENSG00000143437.16	700.09280	1136.96190	-0.69960	15.45700	14.28890	HepG2	PUM1
ARNT	ENSG00000143437.16	762.93220	1155.47940	-0.59890	9.95630	8.91920	HepG2	PCBP1
ARNT	ENSG00000143437.16	4649.30740	3310.70190	0.48980	9.99870	8.89850	K562	RBM15
ARNT	ENSG00000143437.16	1399.83340	953.08410	0.55450	9.50310	8.40020	HepG2	DKC1
ARNT	ENSG00000143437.16	773.05930	1379.38860	-0.83540	10.50130	7.74890	K562	GEMIN5
ARNT	ENSG00000143437.16	2979.11700	2054.66310	0.53590	8.46350	7.07710	K562	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 83 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ARNT is not available on ENCORE database.

20 RBPs can affect the splicing of ARNT :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150811916	150812130	150818738	150818783	-0.20200	0.00000	0.00003	excluded	HepG2	RBFOX2
A3SS	ARNT	ENSG00000143437.16	chr1	-	150807013	150807181	150807013	150807116	150808755	150808969	0.19600	0.00000	0.00001	longer	HepG2	U2AF2
A3SS	ARNT	ENSG00000143437.16	chr1	-	150807013	150807181	150807013	150807116	150808755	150808969	0.09000	0.00000	0.00001	longer	K562	AQR
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150811916	150812130	150818738	150818783	-0.20500	0.00001	0.00465	excluded	K562	MTPAP
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150812057	150812130	150818738	150818783	-0.18500	0.00001	0.00143	excluded	HepG2	FTO
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150811916	150812130	150818738	150818783	-0.21500	0.00001	0.02097	excluded	K562	QKI
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150811916	150812130	150818738	150818783	-0.27500	0.00002	0.03103	excluded	K562	RBFOX2
SE	ARNT	ENSG00000143437.16	chr1	-	150790395	150790506	150789836	150789909	150795669	150795821	0.07000	0.00004	0.01659	included	K562	SBDS
SE	ARNT	ENSG00000143437.16	chr1	-	150814899	150814944	150811916	150812130	150818738	150818783	-0.30600	0.00006	0.00453	excluded	HepG2	SF3B4
A3SS	ARNT	ENSG00000143437.16	chr1	-	150807013	150807181	150807013	150807116	150808755	150808969	0.07100	0.00007	0.00382	longer	K562	U2AF2

Showing 1 to 10 of 34 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ARNT

General Information

Functions

Localization

Domains (AlphaFold: ARNT)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ARNT is not avaliable on ENCORE database.

26 proteins are bound to ARNT RNA:

eCLIP assay for ARNT is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ARNT is not available on ENCORE database.

74 RBPs can affect the gene expression of ARNT :

The Knockdown/knockout RNA-Seq assay for ARNT is not available on ENCORE database.

20 RBPs can affect the splicing of ARNT :

The Knockdown/knockout RNA-Seq assay for ARNT is not avaliable on ENCORE database.