ABCA5

General Information

Gene Name : ABCA5
Gene ID : ENSG00000154265.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ABCA5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ABCA5	ENSG00000154265.15	14.46	9.87	12.16	ENCSR000AEF
HepG2	ABCA5	ENSG00000154265.15	2.46	4.23	3.35	ENCSR985KAT
K562	ABCA5	ENSG00000154265.15	0.78	0.50	0.64	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ABCA5 is not avaliable on ENCORE database.

Proteins bound to RNA

ABCA5 RNA is bound by 6 proteins.

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eCLIP assay for ABCA5 is not avaliable on ENCORE database.

6 proteins are bound to ABCA5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	67273859	67273984	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.30422	15.85384	HepG2	BCLAF1
chr17	67285317	67285382	-	CDS,intron-Distal,intron-Proximal	4.83253	12.14572	HepG2	BCLAF1
chr17	67283836	67283893	-	CDS,intron-Distal,intron-Proximal	4.81005	11.09109	HepG2	BCLAF1
chr17	67251894	67251992	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.25716	10.24470	HepG2	BCLAF1
chr17	67310465	67310565	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.84156	9.74534	HepG2	BCLAF1
chr17	67249712	67249788	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.10010	9.69111	HepG2	BCLAF1
chr17	67270157	67270229	-	3'-UTR,5'-UTR,CDS,intron-Distal	3.85763	9.50935	HepG2	BCLAF1
chr17	67287356	67287403	-	CDS,intron-Distal,intron-Proximal	4.69886	9.30195	HepG2	BCLAF1
chr17	67286159	67286178	-	CDS,intron-Distal	4.53034	8.41475	HepG2	BCLAF1
chr17	67249939	67249995	-	3'-UTR,CDS,intron-Distal	4.24130	7.53358	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 35 entries

eCLIP assay for ABCA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ABCA5 is not available on ENCORE database.
112 RBPs can affect the levels of ABCA5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.

112 RBPs can affect the gene expression of ABCA5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ABCA5	ENSG00000154265.11	3328.65920	379.96020	3.13090	302.22180	299.52290	HepG2	SSB
ABCA5	ENSG00000154265.11	1604.54270	314.06950	2.35290	63.45920	61.66460	HepG2	TIAL1
ABCA5	ENSG00000154265.11	1396.87280	276.52630	2.33660	63.79240	61.42920	HepG2	HNRNPLL
ABCA5	ENSG00000154265.11	1543.51240	388.26740	1.99100	59.02700	56.57200	HepG2	DDX21
ABCA5	ENSG00000154265.11	1232.05040	273.70930	2.17020	58.34310	55.78300	HepG2	SF3B1
ABCA5	ENSG00000154265.11	1318.21260	606.71800	1.11940	39.06230	37.62940	HepG2	ZNF622
ABCA5	ENSG00000154265.11	1682.54980	801.91000	1.06900	37.37010	35.78350	HepG2	SRSF9
ABCA5	ENSG00000154265.11	1010.11810	313.79800	1.68650	37.10410	34.72780	HepG2	MSI2
ABCA5	ENSG00000154265.11	591.49400	200.52440	1.56050	33.57300	31.73810	HepG2	ZC3H8
ABCA5	ENSG00000154265.11	988.31980	403.74800	1.29140	33.64110	31.71820	HepG2	AUH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.

5 RBPs can affect the splicing of ABCA5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ABCA5	ENSG00000154265.11	chr17	-	67247887	67248007			67246612	67246762	67249713	67249808	0.23600	0.00004	0.00454	included	HepG2	SRSF9
SE	ABCA5	ENSG00000154265.11	chr17	-	67244402	67244458			67243091	67243785	67246045	67246125	-0.28000	0.00008	0.00231	excluded	HepG2	U2AF1
MXE	ABCA5	ENSG00000154265.11	chr17	-	67247887	67248007	67249713	67249808	67246612	67246762	67249934	67250010	-0.47900	0.00044	0.07940	2included	HepG2	EFTUD2
SE	ABCA5	ENSG00000154265.11	chr17	-	67244402	67244458			67243091	67243785	67246045	67246125	-0.11600	0.00082	0.01194	excluded	HepG2	U2AF2
SE	ABCA5	ENSG00000154265.11	chr17	-	67247887	67248007			67246612	67246762	67249713	67249808	-0.30100	0.00424	0.08437	excluded	HepG2	HNRNPK

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ABCA5

General Information

Functions

Localization

Domains (AlphaFold: ABCA5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ABCA5 is not avaliable on ENCORE database.

6 proteins are bound to ABCA5 RNA:

eCLIP assay for ABCA5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.

112 RBPs can affect the gene expression of ABCA5 :

The Knockdown/knockout RNA-Seq assay for ABCA5 is not available on ENCORE database.

5 RBPs can affect the splicing of ABCA5 :

The Knockdown/knockout RNA-Seq assay for ABCA5 is not avaliable on ENCORE database.