SSR1

General Information

Gene Name : SSR1
Gene ID : ENSG00000124783.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SSR1)

Not Available

Antibody Validation

Bethyl Labs: A304-978A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SSR1	ENSG00000124783.13	79.02	81.65	80.34	ENCSR000AEF
HepG2	SSR1	ENSG00000124783.13	120.11	190.35	155.23	ENCSR985KAT
K562	SSR1	ENSG00000124783.13	103.91	112.23	108.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SSR1		A304-978A	1					BGKcLV44-73, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
Ssr1	K562	CRISPR	BGKcLV37-47,BGKcLV37-48	BGKcLV37-1,BGKcLV37-2	23.7,22.5	NotSatisfied	ENCORE2
SSR1	K562	CRISPR	BGKcLV44-71,BGKcLV44-72	BGKcLV44-1,BGKcLV44-2	47.3,60.1	NotSatisfied	ENCORE2
SSR1	K562	CRISPR	SSR1-BGKcLV44-73,SSR1-BGKcLV44-74	NT-BGKcLV44-1,NT-BGKcLV44-2	49.8,58.3	Submitting	ENCORE2
Ssr1	HepG2	CRISPR	BGHcLV36-45,BGHcLV36-46	BGHcLV36-1,BGHcLV36-2	0.0,0.0	NotSatisfied	ENCORE2
SSR1	HepG2	CRISPR	SSR1-BGHcLV45-67,SSR1-BGHcLV45-68	NT-BGHcLV45-1,NT-BGHcLV45-2	57.0,60.9	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SSR1	Product_ID: A304-978A Lot_ID: 1 Source: Bethyl Labs Target Name: SSR1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SSR1 is not avaliable on ENCORE database.

Proteins bound to RNA

SSR1 RNA is bound by 45 proteins.

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eCLIP assay for SSR1 is not avaliable on ENCORE database.

45 proteins are bound to SSR1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	7289767	7289835	-	3'-UTR,intron-Distal,intron-Proximal	4.55436	84.34324	K562	UPF1
chr6	7289309	7289382	-	3'-UTR,intron-Distal	6.04704	79.61404	K562	FAM120A
chr6	7303795	7303859	-	CDS,intron-Distal	4.41506	61.54648	HepG2	BCLAF1
chr6	7289478	7289553	-	3'-UTR,intron-Distal	5.05338	57.30676	K562	UPF1
chr6	7289574	7289607	-	3'-UTR,intron-Distal	5.33660	56.50826	K562	UPF1
chr6	7289835	7289877	-	3'-UTR,intron-Distal,intron-Proximal	4.19014	54.53376	K562	UPF1
chr6	7289557	7289583	-	3'-UTR,intron-Distal	7.79222	54.45553	HepG2	LIN28B
chr6	7303792	7303875	-	CDS,intron-Distal,intron-Proximal	3.41820	50.94989	HepG2	BUD13
chr6	7303788	7303872	-	CDS,intron-Distal,intron-Proximal	3.17031	50.09503	HepG2	PPIG
chr6	7303798	7303859	-	CDS,intron-Distal	4.32485	48.86059	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 255 entries

eCLIP assay for SSR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SSR1 is not available on ENCORE database.
112 RBPs can affect the levels of SSR1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.

112 RBPs can affect the gene expression of SSR1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SSR1	ENSG00000124783.8	2176.05140	6955.13400	-1.67640	150.82920	147.52250	HepG2	UTP3
SSR1	ENSG00000124783.8	1551.00510	5635.98160	-1.86150	82.52910	80.08070	HepG2	HNRNPA1
SSR1	ENSG00000124783.8	2659.67310	6227.44230	-1.22740	80.12540	77.41770	HepG2	HNRNPU
SSR1	ENSG00000124783.8	4623.01730	9062.25320	-0.97100	64.10420	62.51860	HepG2	SRFBP1
SSR1	ENSG00000124783.8	2849.18620	6105.19050	-1.09950	56.97630	54.86380	HepG2	TRIM56
SSR1	ENSG00000124783.8	3418.22880	7456.94100	-1.12530	53.53540	51.47080	HepG2	TAF15
SSR1	ENSG00000124783.8	4853.04670	8616.70170	-0.82820	53.11910	51.02070	HepG2	SUCLG1
SSR1	ENSG00000124783.8	2839.69730	6051.52550	-1.09160	40.67860	39.17580	HepG2	TIAL1
SSR1	ENSG00000124783.8	2751.79020	6268.88040	-1.18780	35.75640	33.59790	HepG2	HNRNPC
SSR1	ENSG00000124783.8	1659.45150	3721.88780	-1.16530	33.03690	31.03680	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 138 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.

9 RBPs can affect the splicing of SSR1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SSR1	ENSG00000124783.8	chr6	-	7298155	7298263			7295617	7295718	7298979	7299056	-0.07100	0.00000	0.00000	excluded	K562	AQR
SE	SSR1	ENSG00000124783.8	chr6	-	7297328	7297442			7295624	7295718	7298155	7298234	0.60000	0.00000	0.00000	included	K562	HNRNPC
A3SS	SSR1	ENSG00000124783.8	chr6	-	7298155	7298371			7298155	7298234	7298979	7299206	0.05600	0.00000	0.00000	longer	K562	AQR
A5SS	SSR1	ENSG00000124783.8	chr6	-	7301542	7301805			7301773	7301805	7298979	7299056	-0.05300	0.00000	0.00001	shorter	K562	AQR
MXE	SSR1	ENSG00000124783.8	chr6	-	7295624	7295718	7298979	7299087	7281375	7290164	7301542	7301805	0.05600	0.00000	0.00000	1included	K562	AQR
MXE	SSR1	ENSG00000124783.8	chr6	-	7295617	7295718	7298155	7298234	7289908	7290164	7298979	7299056	-0.06200	0.00000	0.00000	2included	K562	AQR
MXE	SSR1	ENSG00000124783.8	chr6	-	7295617	7295718	7297328	7297442	7289908	7290164	7298155	7298234	0.09700	0.00000	0.00027	1included	HepG2	HNRNPC
MXE	SSR1	ENSG00000124783.8	chr6	-	7295617	7295718	7297328	7297442	7289908	7290164	7298155	7298234	0.71900	0.00000	0.00000	1included	K562	HNRNPC
MXE	SSR1	ENSG00000124783.8	chr6	-	7295624	7295718	7298155	7298234	7288914	7290164	7298979	7299056	-0.15200	0.00001	0.00010	2included	HepG2	U2AF2
SE	SSR1	ENSG00000124783.8	chr6	-	7298155	7298234			7287803	7290164	7298979	7299056	-0.12300	0.00002	0.00045	excluded	HepG2	U2AF2

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SSR1

General Information

Functions

Localization

Domains (AlphaFold: SSR1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SSR1 is not avaliable on ENCORE database.

45 proteins are bound to SSR1 RNA:

eCLIP assay for SSR1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.

112 RBPs can affect the gene expression of SSR1 :

The Knockdown/knockout RNA-Seq assay for SSR1 is not available on ENCORE database.

9 RBPs can affect the splicing of SSR1 :

The Knockdown/knockout RNA-Seq assay for SSR1 is not avaliable on ENCORE database.