KIF1C

General Information

Gene Name : KIF1C
Gene ID : ENSG00000129250.11
Essential Gene : No

Functions

Novel RBP

Localization(RBPImage: KIF1C)

Nuclei
Nucleoplasm
Mutually Exclusive from Nucleolus
Cytoplasm
Cytosolic
Cell Cortex

Domains (AlphaFold: KIF1C)

No checked domain (RRM, ZNF, KH, Helicase, Nuclease, dRBM or PUM_HD)

Antibody Validation

Bethyl Labs: A301-069A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KIF1C	ENSG00000129250.11	6.53	14.46	10.50	ENCSR000AEF
HepG2	KIF1C	ENSG00000129250.11	95.76	70.32	83.04	ENCSR985KAT
K562	KIF1C	ENSG00000129250.11	17.51	19.86	18.69	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	KIF1C-BGKLV32-K562	ENCSR823WTA	KIF1C	K562	Released		ENCSR143COQ	shRNA	KD% = 70.9,79.0
knockdown followed by RNA-seq	KIF1C-BGHLV31-HepG2	ENCSR182GKG	KIF1C	HepG2	Released		ENCSR538QOG	shRNA	KD% = 78.4,77.4

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
KIF1C	ENCAB630KUK	A301-069A	1				BGHLV31-41, Released, ENCODE3	BGKLV32-33, Released, ENCODE3

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
KIF1C	K562	shRNA	ENCSR823WTA	ENCSR143COQ	KIF1C_BGKLV32-33,KIF1C_BGKLV32-34	NT_BGKLV32-1,NT_BGKLV32-2	70.9,79.0	Released	ENCODE3
KIF1C	HepG2	shRNA	ENCSR182GKG	ENCSR538QOG	KIF1C_BGHLV31-41,KIF1C_BGHLV31-42	NT-BGHLV31-1,NT-BGHLV31-2	78.4,77.4	Released	ENCODE3

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

KIF1C: Click to RBP Image Database

Nuclei

Nucleoplasm

Mutually Exclusive from Nucleolus

Cytoplasm

Cytosolic

Cell Cortex

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
KIF1C	Product_ID: A301-069A Lot_ID: 1 Source: Bethyl Labs Target Name: KIF1C-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KIF1C is not avaliable on ENCORE database.

Proteins bound to RNA

KIF1C RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for KIF1C is not avaliable on ENCORE database.

36 proteins are bound to KIF1C RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	4901259	4901365	+	5'-UTR	4.40455	60.10233	HepG2	DDX3X
chr17	4901365	4901452	+	5'-UTR,intron-Proximal	3.95564	43.54079	HepG2	DDX3X
chr17	4905404	4905499	+	CDS,intron-Proximal	5.24776	41.24400	HepG2	PRPF8
chr17	4901490	4901553	+	intron-Distal,intron-Proximal	4.92895	25.78152	HepG2	EFTUD2
chr17	4903143	4903188	+	5'-UTR,intron-Proximal	3.85123	23.95409	HepG2	DDX3X
chr17	4903220	4903267	+	5'-UTR,intron-Proximal	3.92140	22.09141	HepG2	DDX3X
chr17	4903996	4904074	+	CDS,intron-Proximal	5.94884	20.43001	HepG2	EFTUD2
chr17	4903513	4903560	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.00852	20.34347	HepG2	DDX3X
chr17	4901752	4901886	+	intron-Distal	4.32024	19.44365	HepG2	HNRNPK
chr17	4901553	4901625	+	intron-Distal	5.79287	19.27235	HepG2	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 143 entries

eCLIP assay for KIF1C is not avaliable on ENCORE database.

Diffrential Expression

7,965 differentially expressed genes after Knockdown/Knockout KIF1C protein.

CanvasJS.com

97 RBPs can affect the levels of KIF1C.

CanvasJS.com

7,965 differentially expressed genes after Knockdown/Knockout KIF1C protein :

Only display 100 entries as example. Please click "View All" button to see all 7,965 entries.

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
WWTR1	ENSG00000018408.10	1155.22380	2309.38130	-0.99930	45.47420	42.33490	HepG2	KIF1C
CD74	ENSG00000019582.10	2222.82390	1356.99170	0.71190	24.38780	21.81050	HepG2	KIF1C
PAFAH1B1	ENSG00000007168.8	1246.72130	1940.19270	-0.63810	18.55320	16.20880	HepG2	KIF1C
NPC1L1	ENSG00000015520.10	1628.25760	1033.57690	0.65560	17.52570	15.24940	HepG2	KIF1C
GRN	ENSG00000030582.12	5703.86680	4134.75770	0.46400	16.87540	14.62960	HepG2	KIF1C
SARS	ENSG00000031698.8	1915.08680	1282.83590	0.57800	15.42660	13.28480	HepG2	KIF1C
ABCC2	ENSG00000023839.6	10859.73840	7761.46410	0.48450	14.07240	12.01020	HepG2	KIF1C
SRCIN1	ENSG00000017373.11	710.03750	365.27490	0.95880	13.54440	11.50310	HepG2	KIF1C
TFPI	ENSG00000003436.10	14171.14660	9823.03800	0.52860	13.00560	11.00330	HepG2	KIF1C
IL32	ENSG00000008517.12	3049.29410	2244.73550	0.44180	12.12160	10.16010	HepG2	KIF1C
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

97 RBPs can affect the gene expression of KIF1C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KIF1C	ENSG00000129250.7	1289.30190	4864.21020	-1.91560	204.54890	200.17910	HepG2	KIF1C
KIF1C	ENSG00000129250.7	300.15030	1991.67010	-2.73020	111.73970	107.34030	K562	KIF1C
KIF1C	ENSG00000129250.7	4518.01330	7173.16080	-0.66690	37.81680	36.40010	HepG2	ZNF622
KIF1C	ENSG00000129250.7	2173.06470	1149.05280	0.91920	26.61690	24.86430	K562	FXR1
KIF1C	ENSG00000129250.7	2285.55130	4521.92710	-0.98440	26.03240	23.76890	HepG2	HNRNPA2B1
KIF1C	ENSG00000129250.7	4956.50230	2959.87540	0.74370	22.53410	20.94210	HepG2	SAFB2
KIF1C	ENSG00000129250.7	1430.11860	727.35660	0.97530	22.50750	20.20570	K562	EIF3G
KIF1C	ENSG00000129250.7	1996.94410	1039.00330	0.94250	19.24850	17.57160	K562	PTBP1
KIF1C	ENSG00000129250.7	4826.81730	3451.61850	0.48370	18.74710	17.30300	HepG2	SMN1
KIF1C	ENSG00000129250.7	3249.75790	6643.57300	-1.03160	17.01490	15.80940	HepG2	AKAP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 109 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KIF1C is not available on ENCORE database.

9 RBPs can affect the splicing of KIF1C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	KIF1C	ENSG00000129250.7	chr17	+	4903514	4903647			4903144	4903265	4904066	4904143	-0.09400	0.00000	0.00098	excluded	HepG2	PRPF8
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903514	4903647	4904066	4904143	4903144	4903265	4904516	4904696	0.16200	0.00001	0.00324	1included	HepG2	BCLAF1
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903144	4903265	4903514	4903647	4901242	4901451	4904066	4904143	0.15600	0.00001	0.00059	1included	K562	XRN2
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903514	4903647	4904066	4904143	4903144	4903265	4904516	4904696	-0.13500	0.00001	0.00054	2included	HepG2	TAF15
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903144	4903265	4903514	4903647	4901242	4901451	4904066	4904143	0.06700	0.00001	0.00106	1included	HepG2	TIAL1
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903144	4903265	4903514	4903647	4901242	4901451	4904066	4904143	-0.05400	0.00005	0.02711	2included	HepG2	AGGF1
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903514	4903647	4904066	4904143	4903144	4903265	4904516	4904696	-0.08700	0.00019	0.05702	2included	HepG2	AGGF1
SE	KIF1C	ENSG00000129250.7	chr17	+	4902307	4902341			4901248	4901451	4903144	4903265	-0.37100	0.00100	0.04266	excluded	HepG2	HNRNPU
SE	KIF1C	ENSG00000129250.7	chr17	+	4903144	4903265			4901242	4901451	4903514	4903647	-0.06000	0.00631	0.09083	excluded	HepG2	U2AF1
MXE	KIF1C	ENSG00000129250.7	chr17	+	4903514	4903647	4904066	4904143	4903144	4903265	4904516	4904696	0.07000	0.00842	0.04698	1included	HepG2	U2AF2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KIF1C

General Information

Functions

Localization(RBPImage: KIF1C)

Domains (AlphaFold: KIF1C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KIF1C is not avaliable on ENCORE database.

36 proteins are bound to KIF1C RNA:

eCLIP assay for KIF1C is not avaliable on ENCORE database.

Diffrential Expression

7,965 differentially expressed genes after Knockdown/Knockout KIF1C protein :

97 RBPs can affect the gene expression of KIF1C :

The Knockdown/knockout RNA-Seq assay for KIF1C is not available on ENCORE database.

9 RBPs can affect the splicing of KIF1C :

The Knockdown/knockout RNA-Seq assay for KIF1C is not avaliable on ENCORE database.