KDM5D

General Information

Gene Name : KDM5D
Gene ID : ENSG00000012817.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: KDM5D)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	KDM5D	ENSG00000012817.15	0.00	0.00	0.00	ENCSR000AEF
HepG2	KDM5D	ENSG00000012817.15	22.48	19.45	20.96	ENCSR985KAT
K562	KDM5D	ENSG00000012817.15	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for KDM5D is not avaliable on ENCORE database.

Proteins bound to RNA

KDM5D RNA is bound by 16 proteins.

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eCLIP assay for KDM5D is not avaliable on ENCORE database.

16 proteins are bound to KDM5D RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrY	21872216	21872326	-	CDS,intron-Distal,intron-Proximal	3.83841	27.53457	HepG2	PRPF8
chrY	21903619	21903703	-	CDS,intron-Distal,intron-Proximal	4.07309	14.75464	HepG2	BCLAF1
chrY	21893724	21893793	-	CDS,intron-Distal	4.65698	14.65888	HepG2	BCLAF1
chrY	21894553	21894621	-	CDS,intron-Distal	4.21038	13.37200	HepG2	BCLAF1
chrY	21872059	21872138	-	intron-Distal	4.33650	12.93761	HepG2	BCLAF1
chrY	21893931	21893985	-	CDS,intron-Distal,intron-Proximal	3.53588	12.82134	HepG2	BCLAF1
chrY	21901413	21901464	-	CDS,intron-Distal,intron-Proximal	5.78443	12.56307	HepG2	BCLAF1
chrY	21897506	21897590	-	CDS,intron-Distal,intron-Proximal	5.18680	12.44336	HepG2	BCLAF1
chrY	21903320	21903374	-	CDS,intron-Distal	4.34609	11.55759	HepG2	BCLAF1
chrY	21871627	21871704	-	CDS,intron-Distal,intron-Proximal	4.91212	11.38699	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 83 entries

eCLIP assay for KDM5D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for KDM5D is not available on ENCORE database.
81 RBPs can affect the levels of KDM5D.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.

81 RBPs can affect the gene expression of KDM5D :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
KDM5D	ENSG00000012817.11	3526.40050	1540.99090	1.19420	46.45340	44.56230	HepG2	PUS1
KDM5D	ENSG00000012817.11	3047.96740	1732.69470	0.81470	38.14570	36.72380	HepG2	ZNF622
KDM5D	ENSG00000012817.11	2311.22780	1240.21290	0.89800	29.40340	27.99460	HepG2	PTBP1
KDM5D	ENSG00000012817.11	3675.00970	2024.19100	0.86030	28.51330	27.25650	HepG2	SSB
KDM5D	ENSG00000012817.11	2974.09760	1218.21930	1.28760	25.08790	23.15520	HepG2	G3BP1
KDM5D	ENSG00000012817.11	2230.93930	1347.72430	0.72700	20.92480	19.88080	HepG2	SRSF1
KDM5D	ENSG00000012817.11	1858.84370	1222.02650	0.60500	16.59630	15.12990	HepG2	DNAJC2
KDM5D	ENSG00000012817.11	2241.99640	1343.12200	0.73910	16.02080	14.69610	HepG2	QKI
KDM5D	ENSG00000012817.11	1694.18010	898.07900	0.91560	16.37160	14.53970	HepG2	FUBP3
KDM5D	ENSG00000012817.11	2317.73300	1233.79370	0.90950	15.84160	14.31040	HepG2	HNRNPK
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 81 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.

11 RBPs can affect the splicing of KDM5D :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21871336	21872146	21871336	21871464	21872261	21872358	0.45800	0.00000	0.00269	longer	HepG2	DDX59
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21871336	21872146	21871336	21871695	21872261	21872358	0.40600	0.00004	0.01318	longer	HepG2	PTBP1
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21871336	21872146	21871336	21871464	21872261	21872358	0.45800	0.00004	0.02122	longer	HepG2	FTO
SE	KDM5D	ENSG00000012817.11	chrY	-	21872100	21872146	21871336	21871695	21872261	21872492	-0.58300	0.00020	0.05504	excluded	HepG2	EFTUD2
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21871336	21872146	21871336	21871695	21872261	21872358	0.35500	0.00026	0.03910	longer	HepG2	PCBP1
RI	KDM5D	ENSG00000012817.11	chrY	-	21868326	21868749	21868326	21868526	21868679	21868749	0.11300	0.00026	0.00417	included	HepG2	RBM22
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21871336	21872146	21871336	21871695	21872261	21872358	0.35500	0.00033	0.08312	longer	HepG2	QKI
A3SS	KDM5D	ENSG00000012817.11	chrY	-	21868326	21868526	21868326	21868494	21868679	21868749	0.18300	0.00149	0.09680	longer	HepG2	SF3A3
RI	KDM5D	ENSG00000012817.11	chrY	-	21868326	21868749	21868326	21868494	21868679	21868749	0.24800	0.00168	0.02059	included	HepG2	SF3A3
RI	KDM5D	ENSG00000012817.11	chrY	-	21868326	21868749	21868326	21868494	21868679	21868749	-0.17400	0.00226	0.09628	excluded	HepG2	SSB

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

KDM5D

General Information

Functions

Localization

Domains (AlphaFold: KDM5D)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for KDM5D is not avaliable on ENCORE database.

16 proteins are bound to KDM5D RNA:

eCLIP assay for KDM5D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.

81 RBPs can affect the gene expression of KDM5D :

The Knockdown/knockout RNA-Seq assay for KDM5D is not available on ENCORE database.

11 RBPs can affect the splicing of KDM5D :

The Knockdown/knockout RNA-Seq assay for KDM5D is not avaliable on ENCORE database.