AP3D1

General Information

Gene Name : AP3D1
Gene ID : ENSG00000065000.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AP3D1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AP3D1	ENSG00000065000.17	26.80	46.74	36.77	ENCSR000AEF
HepG2	AP3D1	ENSG00000065000.17	102.86	49.87	76.36	ENCSR985KAT
K562	AP3D1	ENSG00000065000.17	65.30	55.25	60.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AP3D1 is not avaliable on ENCORE database.

Proteins bound to RNA

AP3D1 RNA is bound by 63 proteins.

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eCLIP assay for AP3D1 is not avaliable on ENCORE database.

63 proteins are bound to AP3D1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	2151375	2151502	-	5'-UTR,intron-Distal	4.52916	57.80757	HepG2	DDX3X
chr19	2123775	2123812	-	intron-Distal,intron-Proximal	6.22406	50.35603	HepG2	PRPF8
chr19	2101525	2101682	-	3'-UTR,intron-Distal,intron-Proximal	5.56999	48.30162	K562	UPF1
chr19	2129405	2129473	-	CDS,intron-Distal,intron-Proximal	5.40823	45.22992	K562	SF3B4
chr19	2104433	2104570	-	intron-Distal	5.58175	43.63901	HepG2	HNRNPM
chr19	2123821	2123838	-	CDS,intron-Distal,intron-Proximal	4.60302	37.70732	HepG2	PRPF8
chr19	2129473	2129506	-	intron-Distal,intron-Proximal	7.58131	36.01883	K562	SF3B4
chr19	2104070	2104148	-	intron-Distal	5.95171	32.95240	HepG2	HNRNPM
chr19	2101780	2101908	-	3'-UTR,intron-Distal	5.47692	31.55387	HepG2	UPF1
chr19	2101545	2101620	-	3'-UTR,intron-Distal,intron-Proximal	5.97856	30.68389	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 435 entries

eCLIP assay for AP3D1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AP3D1 is not available on ENCORE database.
100 RBPs can affect the levels of AP3D1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AP3D1 is not available on ENCORE database.

100 RBPs can affect the gene expression of AP3D1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AP3D1	ENSG00000065000.11	3582.87150	1844.43730	0.95780	41.94360	40.08560	HepG2	TRIM56
AP3D1	ENSG00000065000.11	3148.94600	1675.44920	0.91020	41.75230	39.70780	HepG2	SAFB2
AP3D1	ENSG00000065000.11	4385.92350	2647.72680	0.72800	37.65000	35.97380	HepG2	PUM1
AP3D1	ENSG00000065000.11	3611.54700	2391.64530	0.59450	22.45480	20.83840	HepG2	SLBP
AP3D1	ENSG00000065000.11	3400.95200	1787.08470	0.92820	22.17610	20.69790	HepG2	RPS19
AP3D1	ENSG00000065000.11	3845.06010	2462.69850	0.64270	20.67220	19.17570	HepG2	SRSF5
AP3D1	ENSG00000065000.11	2017.44210	1109.52450	0.86250	21.00520	18.75670	K562	EIF3G
AP3D1	ENSG00000065000.11	3022.41870	1678.65580	0.84830	19.05390	17.38730	K562	PTBP1
AP3D1	ENSG00000065000.11	3849.12340	2450.68290	0.65120	18.64390	17.27650	HepG2	CELF1
AP3D1	ENSG00000065000.11	3913.36800	2627.28120	0.57470	15.91860	14.81330	HepG2	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 117 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AP3D1 is not available on ENCORE database.

29 RBPs can affect the splicing of AP3D1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	AP3D1	ENSG00000065000.11	chr19	-	2113334	2113412	2111769	2111827	2114123	2114301	-0.12500	0.00002	excluded	K562	AKAP8L
SE	AP3D1	ENSG00000065000.11	chr19	-	2113334	2113412	2111670	2111827	2114123	2114301	-0.11200	0.00001	excluded	K562	PUS1
SE	AP3D1	ENSG00000065000.11	chr19	-	2132469	2132577	2130406	2130536	2137009	2137090	0.06900	0.00011	included	K562	EIF4G2
SE	AP3D1	ENSG00000065000.11	chr19	-	2113334	2113412	2111670	2111827	2114123	2114301	-0.09200	0.00025	excluded	K562	RBM15
A3SS	AP3D1	ENSG00000065000.11	chr19	-	2123828	2124028	2123828	2123878	2127150	2127200	0.11600	0.00000	longer	HepG2	U2AF2
A3SS	AP3D1	ENSG00000065000.11	chr19	-	2114123	2114337	2114123	2114301	2114746	2114820	0.05700	0.00000	longer	K562	AQR
A3SS	AP3D1	ENSG00000065000.11	chr19	-	2109084	2109293	2109084	2109206	2109871	2109957	0.13600	0.00000	longer	K562	AQR
A3SS	AP3D1	ENSG00000065000.11	chr19	-	2123828	2124028	2123828	2123878	2127150	2127200	0.13200	0.00000	longer	HepG2	U2AF1
RI	AP3D1	ENSG00000065000.11	chr19	-	2109084	2109957	2109084	2109206	2109871	2109957	0.08700	0.00001	included	K562	PUS1
RI	AP3D1	ENSG00000065000.11	chr19	-	2109084	2109957	2109084	2109206	2109871	2109957	0.17800	0.00000	included	K562	AQR

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AP3D1

General Information

Functions

Localization

Domains (AlphaFold: AP3D1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AP3D1 is not avaliable on ENCORE database.

63 proteins are bound to AP3D1 RNA:

eCLIP assay for AP3D1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AP3D1 is not available on ENCORE database.

100 RBPs can affect the gene expression of AP3D1 :

The Knockdown/knockout RNA-Seq assay for AP3D1 is not available on ENCORE database.

29 RBPs can affect the splicing of AP3D1 :

The Knockdown/knockout RNA-Seq assay for AP3D1 is not avaliable on ENCORE database.