PRKRA

General Information

Gene Name : PRKRA
Gene ID : ENSG00000180228.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRKRA)

Not Available

Antibody Validation

Cell Signaling Technology: 13490S

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRKRA	ENSG00000180228.12	43.16	32.81	37.98	ENCSR000AEF
HepG2	PRKRA	ENSG00000180228.12	35.08	50.48	42.78	ENCSR985KAT
K562	PRKRA	ENSG00000180228.12	31.06	35.20	33.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
PRKRA		13490S	1			Submitted, ENCORE2	BGHcLV43-43, Submitted, ENCORE2	BGKcLV42-69, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
PRKRA	K562	CRISPR			PRKRA-BGKcLV42-69,PRKRA-BGKcLV42-70	NT-BGKcLV42-1,NT-BGKcLV42-2	87.1,91.5	Submitting	ENCORE2
PRKRA	HepG2	CRISPR			PRKRA-BGHcLV43-43,PRKRA-BGHcLV43-44	NT-BGHcLV43-1,NT-BGHcLV43-2	88.6,86.9	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
PRKRA	Product_ID: 13490S Lot_ID: 1 Source: Cell Signaling Technology Target Name: PRKRA-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRKRA is not avaliable on ENCORE database.

Proteins bound to RNA

PRKRA RNA is bound by 16 proteins.

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eCLIP assay for PRKRA is not avaliable on ENCORE database.

16 proteins are bound to PRKRA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	179313713	179313782	-	intron-Distal	4.17914	11.77849	HepG2	QKI
chr2	179314968	179315074	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.07217	8.44537	K562	YBX3
chr2	179315419	179315505	-	5'-UTR,intron-Distal,intron-Proximal	3.99540	8.19973	HepG2	EFTUD2
chr2	179296654	179296788	-	3'-UTR,intron-Distal,intron-Proximal	4.29113	8.08036	K562	IGF2BP1
chr2	179315629	179315715	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.31030	7.96871	HepG2	PRPF8
chr2	179315621	179315677	-	5'-UTR,intron-Distal,intron-Proximal	4.99540	7.37772	HepG2	EFTUD2
chr2	179308015	179308106	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.38556	7.03584	HepG2	GRWD1
chr2	179312200	179312252	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.21890	6.35567	HepG2	PRPF8
chr2	179315820	179315865	-	5'-UTR,intron-Distal,intron-Proximal	4.36122	6.15796	HepG2	DDX3X
chr2	179309106	179309178	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.23567	5.93840	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for PRKRA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRKRA is not available on ENCORE database.
75 RBPs can affect the levels of PRKRA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRKRA is not available on ENCORE database.

75 RBPs can affect the gene expression of PRKRA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRKRA	ENSG00000180228.8	485.63390	1266.72840	-1.38320	22.92760	21.10090	HepG2	G3BP1
PRKRA	ENSG00000180228.8	1894.94480	1164.48070	0.70240	17.57970	16.27240	K562	AGGF1
PRKRA	ENSG00000180228.8	754.12210	1301.14310	-0.78690	16.98230	15.70830	HepG2	SF3B4
PRKRA	ENSG00000180228.8	421.03820	786.56780	-0.90160	16.61120	15.22090	HepG2	HNRNPU
PRKRA	ENSG00000180228.8	663.51850	1157.09960	-0.80230	15.98470	14.68950	HepG2	CELF1
PRKRA	ENSG00000180228.8	465.42240	805.51270	-0.79140	15.10330	13.49860	HepG2	DDX19B
PRKRA	ENSG00000180228.8	315.90610	744.73050	-1.23720	15.61560	13.20880	HepG2	GNB2L1
PRKRA	ENSG00000180228.8	2141.28850	1201.63920	0.83340	13.20230	12.06240	K562	PUS1
PRKRA	ENSG00000180228.8	665.55810	1249.34970	-0.90850	12.80170	11.41960	HepG2	PUM2
PRKRA	ENSG00000180228.8	676.54560	1162.82550	-0.78140	11.72660	10.27650	K562	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 84 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRKRA is not available on ENCORE database.

18 RBPs can affect the splicing of PRKRA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PRKRA	ENSG00000180228.8	chr2	-	179306336	179306431			179300871	179301046	179307993	179308111	-0.09300	0.00000	0.00000	excluded	K562	U2AF2
SE	PRKRA	ENSG00000180228.8	chr2	-	179310152	179310262			179309148	179309227	179312231	179312313	0.14700	0.00000	0.00019	included	HepG2	HNRNPU
SE	PRKRA	ENSG00000180228.8	chr2	-	179310152	179310262			179309148	179309227	179312231	179312313	0.10000	0.00000	0.00004	included	K562	HNRNPC
MXE	PRKRA	ENSG00000180228.8	chr2	-	179306336	179306431	179307993	179308130	179300871	179301046	179309148	179309227	0.09900	0.00000	0.00000	1included	K562	U2AF2
MXE	PRKRA	ENSG00000180228.8	chr2	-	179309148	179309227	179315092	179315138	179307993	179308111	179315692	179315958	0.19200	0.00000	0.00027	1included	K562	TARDBP
MXE	PRKRA	ENSG00000180228.8	chr2	-	179309148	179309227	179315092	179315138	179307993	179308111	179315692	179315958	0.16600	0.00000	0.00063	1included	K562	TIA1
SE	PRKRA	ENSG00000180228.8	chr2	-	179310152	179310262			179309148	179309227	179312231	179312400	0.09000	0.00002	0.00039	included	K562	AQR
SE	PRKRA	ENSG00000180228.8	chr2	-	179310152	179310262			179309148	179309227	179312231	179312313	0.10200	0.00003	0.00840	included	HepG2	HNRNPA1
SE	PRKRA	ENSG00000180228.8	chr2	-	179310152	179310262			179309148	179309227	179312231	179312313	0.10400	0.00003	0.00287	included	HepG2	SF3B4
MXE	PRKRA	ENSG00000180228.8	chr2	-	179314968	179315092	179315092	179315138	179312231	179312313	179315692	179315748	0.17000	0.00003	0.01705	1included	K562	APOBEC3C

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRKRA

General Information

Functions

Localization

Domains (AlphaFold: PRKRA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRKRA is not avaliable on ENCORE database.

16 proteins are bound to PRKRA RNA:

eCLIP assay for PRKRA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRKRA is not available on ENCORE database.

75 RBPs can affect the gene expression of PRKRA :

The Knockdown/knockout RNA-Seq assay for PRKRA is not available on ENCORE database.

18 RBPs can affect the splicing of PRKRA :

The Knockdown/knockout RNA-Seq assay for PRKRA is not avaliable on ENCORE database.