IRF2BP1

General Information

Gene Name       : IRF2BP1
Gene ID             : ENSG00000170604.4
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: IRF2BP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878IRF2BP1ENSG00000170604.40.191.330.76ENCSR000AEF
HepG2IRF2BP1ENSG00000170604.46.001.773.88ENCSR985KAT
K562IRF2BP1ENSG00000170604.46.232.344.29ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq IRF2BP1-BGRSLV04-RS293IRF2BP1Ribo-STAMP-293TReleased   shRNAKD% = ,






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
IRF2BP1Ribo-STAMP-293TshRNABGRSLV03-35,BGRSLV03-36BGRSLV03-1,BGRSLV03-2NotSatisfiedENCORE2
IRF2BP1Ribo-STAMP-293TshRNAIRF2BP1-BGRSLV04-11,IRF2BP1-BGRSLV04-12NT-BGRSLV04-1,NT-BGRSLV04-2,ReleasedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for IRF2BP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • IRF2BP1 RNA is bound by 8 proteins.  







eCLIP assay for IRF2BP1 is not avaliable on ENCORE database.





8 proteins are bound to IRF2BP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194638705446387173-3'-UTR4.419308.42890HepG2DDX55
chr194638710946387155-3'-UTR4.608285.94584K562PABPC4
chr194638712546387189-3'-UTR6.79805400.00000K562PUM2
chr194638713746387260-3'-UTR3.957669.70979HepG2PCBP2
chr194638696846387040-3'-UTR4.033718.16351HepG2DDX55
chr194638926846389346-5'-UTR3.797917.49943HepG2DDX3X
chr194638911946389190-5'-UTR3.890127.20578HepG2SLTM
chr194638910746389189-5'-UTR4.4837817.33964HepG2DDX3X
chr194638913746389193-5'-UTR3.874984.73155HepG2RBM15
chr194638916146389353-5'-UTR4.577686.30252K562DDX3X
chr194638739546387445-CDS4.609734.34093HepG2RBM15
chr194638895446389009-CDS4.370537.51958HepG2DDX3X
chr194638846246388541-CDS3.969574.60713HepG2XPO5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for IRF2BP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for IRF2BP1 is not available on ENCORE database.

  • 92 RBPs can affect the levels of IRF2BP1.  








The Knockdown/knockout RNA-Seq assay for IRF2BP1 is not available on ENCORE database.





92 RBPs can affect the gene expression of IRF2BP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
IRF2BP1ENSG00000170604.3521.03700300.975100.791605.000403.77240HepG2ABCF1
IRF2BP1ENSG00000170604.3374.30330262.867700.509802.803202.19240HepG2ACO1
IRF2BP1ENSG00000170604.3135.94130203.09570-0.579202.297001.58860HepG2CALR
IRF2BP1ENSG00000170604.3197.5075062.256301.665508.936507.58810HepG2CNOT7
IRF2BP1ENSG00000170604.3343.61340243.144800.498903.754402.80140HepG2DDX19B
IRF2BP1ENSG00000170604.3396.78010251.509900.657605.337104.45250HepG2DKC1
IRF2BP1ENSG00000170604.3130.3484072.927600.837703.391002.61780HepG2DNAJC21
IRF2BP1ENSG00000170604.3157.5608072.269201.124406.858205.89710HepG2DNAJC2
IRF2BP1ENSG00000170604.3369.46270228.223400.694904.407502.94280HepG2EIF2S2
IRF2BP1ENSG00000170604.3275.12160171.989300.677702.931402.27320HepG2EIF4A3
IRF2BP1ENSG00000170604.3165.2968085.393400.952802.918301.71550HepG2FAM120A
IRF2BP1ENSG00000170604.3140.96900220.01390-0.642203.036302.21510HepG2FUBP3
IRF2BP1ENSG00000170604.3287.95130173.613500.729803.888903.07800HepG2FXR1
IRF2BP1ENSG00000170604.3105.7000052.695901.004103.272501.78370HepG2HNRNPA0
IRF2BP1ENSG00000170604.3128.9382073.626100.808302.719802.07860HepG2HNRNPA1
IRF2BP1ENSG00000170604.3280.27900197.753700.503102.369601.70240HepG2HNRNPF
IRF2BP1ENSG00000170604.3191.46780143.995700.411001.888501.31740HepG2HNRNPL
IRF2BP1ENSG00000170604.3202.4579081.349601.315307.888906.90520HepG2HNRNPU
IRF2BP1ENSG00000170604.3119.4565059.373701.008503.632602.23430HepG2KHDRBS1
IRF2BP1ENSG00000170604.3495.75270301.819500.715802.643301.83180HepG2LARP4
IRF2BP1ENSG00000170604.3144.2700086.933000.730702.527101.44570HepG2LARP7
IRF2BP1ENSG00000170604.3162.5560091.263700.832703.259401.94240HepG2LIN28B
IRF2BP1ENSG00000170604.3397.98560173.674501.1962010.308509.06790HepG2MAGOH
IRF2BP1ENSG00000170604.3419.15610174.632901.263109.797508.66720HepG2MATR3
IRF2BP1ENSG00000170604.3348.13070178.735500.961706.406605.45890HepG2NCBP2
IRF2BP1ENSG00000170604.3255.70380156.771800.705702.982902.19150HepG2NOL12
IRF2BP1ENSG00000170604.3241.45270115.369001.065405.125203.19410HepG2NOLC1
IRF2BP1ENSG00000170604.3237.13470106.445401.155504.089402.74270HepG2NONO
IRF2BP1ENSG00000170604.3143.3220071.311601.007002.987701.33760HepG2PA2G4
IRF2BP1ENSG00000170604.3288.29190180.004000.679404.502003.76000HepG2PCBP1
IRF2BP1ENSG00000170604.3160.2119078.950701.020903.937502.46410HepG2PKM
IRF2BP1ENSG00000170604.3160.4873072.558201.145106.675705.56870HepG2PPIL4
IRF2BP1ENSG00000170604.3130.74210225.61490-0.787103.343502.49970HepG2PRPF4
IRF2BP1ENSG00000170604.3326.28280183.149500.833006.520705.75040HepG2PTBP1
IRF2BP1ENSG00000170604.3236.06600149.669200.657303.642502.97020HepG2PUF60
IRF2BP1ENSG00000170604.3317.41070158.900200.998107.497606.61970HepG2PUM1
IRF2BP1ENSG00000170604.3397.28570267.757300.569204.691203.92950HepG2PUS1
IRF2BP1ENSG00000170604.3248.81950104.829001.247007.816206.13780HepG2RBM27
IRF2BP1ENSG00000170604.3229.9481085.125901.433508.135006.32690HepG2RCC2
IRF2BP1ENSG00000170604.3376.31130203.837200.884407.536006.72120HepG2NELFE
IRF2BP1ENSG00000170604.3260.54450189.829600.456702.054401.51320HepG2RECQL
IRF2BP1ENSG00000170604.3216.6893092.925101.221403.963003.23990HepG2RPS19
IRF2BP1ENSG00000170604.3259.8293096.676801.4262010.140608.69240HepG2RPS2
IRF2BP1ENSG00000170604.3198.7215062.564901.6672010.267008.76400HepG2RPS3A
IRF2BP1ENSG00000170604.3194.2036098.689600.976504.611203.20960HepG2RPS5
IRF2BP1ENSG00000170604.3135.7444072.448200.905804.032303.27950HepG2SAFB2
IRF2BP1ENSG00000170604.3125.5996058.914301.092004.087702.51070HepG2SART3
IRF2BP1ENSG00000170604.3287.40800120.626301.252503.514001.94280HepG2SF1
IRF2BP1ENSG00000170604.3494.94550345.732000.517502.795102.11790HepG2SF3A3
IRF2BP1ENSG00000170604.3358.45070261.150700.456801.996401.39150HepG2SF3B1
IRF2BP1ENSG00000170604.3339.52590117.288501.533404.772602.79270HepG2SFPQ
IRF2BP1ENSG00000170604.3204.31800143.549900.509202.376101.71930HepG2SLBP
IRF2BP1ENSG00000170604.3153.7498084.491600.863604.150303.39040HepG2SMN1
IRF2BP1ENSG00000170604.3178.32630101.727700.809702.139801.30870HepG2SMNDC1
IRF2BP1ENSG00000170604.3239.99190147.800200.699204.623803.85060HepG2SRSF5
IRF2BP1ENSG00000170604.3291.12290168.069300.792504.422203.67110HepG2SUCLG1
IRF2BP1ENSG00000170604.395.88960178.88540-0.899604.639803.94320HepG2TAF15
IRF2BP1ENSG00000170604.3111.02610164.39580-0.566302.217801.46700HepG2TIA1
IRF2BP1ENSG00000170604.3161.4967079.064201.030305.268404.62390HepG2TIAL1
IRF2BP1ENSG00000170604.3179.7326079.751801.172204.581503.89310HepG2TRIM56
IRF2BP1ENSG00000170604.3301.03400146.252701.041402.814601.93480HepG2TUFM
IRF2BP1ENSG00000170604.3360.32160259.891700.471301.963001.42400HepG2U2AF1
IRF2BP1ENSG00000170604.3248.65700154.827300.683402.041601.32830HepG2UBE2L3
IRF2BP1ENSG00000170604.3209.13760306.61100-0.552002.574001.89710HepG2UPF1
IRF2BP1ENSG00000170604.3135.1254056.042301.269605.697604.12830HepG2XPO5
IRF2BP1ENSG00000170604.3190.16860113.457700.745001.990901.36800HepG2XRN2
IRF2BP1ENSG00000170604.3136.24210212.45090-0.641002.987402.40120K562AGGF1
IRF2BP1ENSG00000170604.3464.79360276.801400.747605.978504.04770K562APOBEC3C
IRF2BP1ENSG00000170604.3556.08520290.595400.936203.337402.70490K562AQR
IRF2BP1ENSG00000170604.3185.73860107.195800.792903.311402.25910K562BCLAF1
IRF2BP1ENSG00000170604.3234.31250138.511600.758304.251802.88580K562CCAR1
IRF2BP1ENSG00000170604.3489.03130328.259300.575003.718002.42390K562CPEB4
IRF2BP1ENSG00000170604.3253.91030385.75100-0.603404.093802.89820K562CELF1
IRF2BP1ENSG00000170604.3625.56150339.704800.8808012.6503011.36460K562DDX47
IRF2BP1ENSG00000170604.3177.4187099.683000.831603.500902.46770K562EFTUD2
IRF2BP1ENSG00000170604.3357.17670255.806600.481502.969502.22870K562EIF2S2
IRF2BP1ENSG00000170604.3201.84540106.709100.919504.192402.88560K562EIF3D
IRF2BP1ENSG00000170604.3483.48640313.703100.624005.012403.76660K562EIF4G2
IRF2BP1ENSG00000170604.3223.96350138.965900.688403.625202.94710K562FXR1
IRF2BP1ENSG00000170604.3205.61020115.633900.830203.879503.18750K562HNRNPC
IRF2BP1ENSG00000170604.3425.23870306.990600.470002.929201.83890K562HNRNPL
IRF2BP1ENSG00000170604.3431.44050289.509300.575504.594203.43850K562HNRNPU
IRF2BP1ENSG00000170604.3122.2484066.076100.887502.829901.79090K562IGF2BP2
IRF2BP1ENSG00000170604.3151.87410234.60050-0.627302.415201.65170K562KIF1C
IRF2BP1ENSG00000170604.3169.3242069.344701.287808.032906.56730K562MAGOH
IRF2BP1ENSG00000170604.394.38200184.21320-0.964803.739002.67430K562NAA15
IRF2BP1ENSG00000170604.3191.3122098.272100.961004.234002.54450K562NONO
IRF2BP1ENSG00000170604.3197.9913097.003601.029204.895903.90120K562PRPF8
IRF2BP1ENSG00000170604.3197.2523067.380101.549509.275308.10690K562PTBP1
IRF2BP1ENSG00000170604.3130.13450219.22430-0.752403.428802.83340K562PUS1
IRF2BP1ENSG00000170604.3140.2572064.555501.119404.190103.13040K562RBM22
IRF2BP1ENSG00000170604.3116.6702062.970600.889603.189701.66420K562RBM34
IRF2BP1ENSG00000170604.3136.7512067.947001.009002.461401.44050K562NELFE
IRF2BP1ENSG00000170604.3191.9992098.793700.958504.051603.06180K562RPS19
IRF2BP1ENSG00000170604.3153.9299075.407101.029403.581302.42710K562RPS3
IRF2BP1ENSG00000170604.399.68780185.15920-0.893302.557201.39460K562SNRNP200
IRF2BP1ENSG00000170604.3152.1312089.765600.761002.759301.73710K562SRFBP1
IRF2BP1ENSG00000170604.3157.1852066.066001.250406.562505.48480K562SRSF1
IRF2BP1ENSG00000170604.3153.2232072.783001.073904.420303.03940K562SRSF4
IRF2BP1ENSG00000170604.3118.2481062.421800.921603.477302.27660K562SRSF5
IRF2BP1ENSG00000170604.3182.5330066.839201.449304.255603.37200K562TARDBP
IRF2BP1ENSG00000170604.3153.7190064.480301.253306.711305.35190K562TIA1
IRF2BP1ENSG00000170604.3114.5329063.330800.854702.784401.68890K562TRA2A
IRF2BP1ENSG00000170604.3182.75420101.226300.852203.136001.81990K562XRN2
IRF2BP1ENSG00000170604.3108.97790217.94470-0.999903.223801.46920K562YTHDC2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for IRF2BP1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of IRF2BP1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for IRF2BP1 is not avaliable on ENCORE database.