VIMP

General Information

Gene Name       : VIMP
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VIMP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VIMP is not avaliable on ENCORE database.



Proteins bound to RNA
  • VIMP RNA is bound by 17 proteins.  







eCLIP assay for VIMP is not avaliable on ENCORE database.





17 proteins are bound to VIMP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr15101812976101813044-3'-UTR,CDS,intron-Distal,intron-Proximal3.365344.89070K562UCHL5
chr15101812948101813059-3'-UTR,CDS,intron-Distal,intron-Proximal4.5052911.74344HepG2GRWD1
chr15101812976101813054-3'-UTR,CDS,intron-Distal,intron-Proximal4.541784.89631K562SND1
chr15101812688101812736-3'-UTR,intron-Distal3.223773.28764HepG2LARP4
chr15101812969101813063-3'-UTR,CDS,intron-Distal,intron-Proximal3.628155.83654K562ZNF622
chr15101812461101812571-3'-UTR,intron-Distal4.079357.35577K562PUM2
chr15101812768101812861-3'-UTR,intron-Distal4.011503.57526HepG2IGF2BP1
chr15101812954101813062-3'-UTR,CDS,intron-Distal,intron-Proximal3.039116.38443HepG2BCLAF1
chr15101812972101813062-3'-UTR,CDS,intron-Distal,intron-Proximal3.001553.47139K562GRWD1
chr15101812980101813059-3'-UTR,CDS,intron-Distal,intron-Proximal4.2936520.85524HepG2SND1
chr15101817544101817646-5'-UTR,CDS,intron-Distal,intron-Proximal4.738655.88953K562DDX3X
chr15101817619101817666-5'-UTR,CDS,intron-Distal,intron-Proximal6.3565211.95715HepG2DDX3X
chr15101814793101814847-CDS,intron-Distal,intron-Proximal4.279218.16704K562ZNF622
chr15101814798101814890-CDS,intron-Distal,intron-Proximal3.378976.39282HepG2GRWD1
chr15101814641101814701-CDS,intron-Distal,intron-Proximal5.397739.91970K562ZNF622
chr15101816751101816830-CDS,intron-Distal3.240403.54074K562RBM15
chr15101814788101814875-CDS,intron-Distal,intron-Proximal3.332213.08145HepG2HLTF
chr15101814673101814701-CDS,intron-Distal,intron-Proximal5.288668.07539HepG2BCLAF1
chr15101816698101816747-CDS,intron-Distal,intron-Proximal4.492114.09264K562AQR
chr15101815455101815556-CDS,intron-Distal,intron-Proximal3.169416.50801HepG2BCLAF1
chr15101816824101816881-CDS,intron-Distal,intron-Proximal4.236788.43072HepG2DDX3X
chr15101814620101814708-CDS,intron-Distal,intron-Proximal3.585488.46496HepG2BUD13
chr15101813044101813062-CDS,intron-Distal,intron-Proximal3.971833.01428K562UCHL5
chr15101814791101814893-CDS,intron-Distal,intron-Proximal6.1267216.01150HepG2BCLAF1
chr15101814792101814887-CDS,intron-Distal,intron-Proximal4.032399.17402K562UCHL5
chr15101817546101817557-CDS,intron-Distal,intron-Proximal4.8565211.01276HepG2DDX3X
chr15101814626101814701-CDS,intron-Distal,intron-Proximal3.224913.20659K562SND1
chr15101814670101814702-CDS,intron-Distal,intron-Proximal3.992003.88696K562GRWD1
chr15101814796101814882-CDS,intron-Distal,intron-Proximal3.132709.15494K562ZNF800
chr15101816833101816883-CDS,intron-Distal,intron-Proximal4.176654.26442K562DDX3X
chr15101814868101814910-CDS,intron-Distal,intron-Proximal3.561996.68206HepG2AQR
chr15101814793101814828-CDS,intron-Distal,intron-Proximal3.128653.46619K562GRWD1
chr15101815464101815551-CDS,intron-Distal3.275884.14618K562ZNF622
chr15101814616101814701-CDS,intron-Distal,intron-Proximal3.123308.31208HepG2PPIG
chr15101816747101816823-CDS,intron-Distal3.022407.36535K562ZNF622
chr15101816693101816789-CDS,intron-Distal,intron-Proximal3.037326.15485HepG2PRPF8
chr15101814621101814673-CDS,intron-Distal,intron-Proximal3.919027.89209HepG2BCLAF1
chr15101814796101814857-CDS,intron-Distal,intron-Proximal3.051106.07518K562PUM1
chr15101814625101814701-CDS,intron-Distal,intron-Proximal3.471836.54511K562UCHL5
chr15101817557101817619-CDS,intron-Distal,intron-Proximal6.2483133.75681HepG2DDX3X
chr15101816749101816850-CDS,intron-Distal3.5596911.21200HepG2GRWD1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VIMP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VIMP is not available on ENCORE database.

  • 71 RBPs can affect the levels of VIMP.  








The Knockdown/knockout RNA-Seq assay for VIMP is not available on ENCORE database.





71 RBPs can affect the gene expression of VIMP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VIMPENSG00000131871.10659.76350504.416000.387202.168001.34200HepG2BCCIP
VIMPENSG00000131871.10726.22960438.340100.728306.362105.06220HepG2BCLAF1
VIMPENSG00000131871.10710.83580432.777500.715808.031806.81430HepG2CALR
VIMPENSG00000131871.10972.55850735.406800.403102.761801.99010HepG2CIRBP
VIMPENSG00000131871.10614.25430472.330600.378902.124301.51300HepG2CPSF6
VIMPENSG00000131871.10490.60450352.708600.476003.683702.50950HepG2YBX3
VIMPENSG00000131871.10946.34060717.275100.399704.324603.55370HepG2CELF1
VIMPENSG00000131871.10985.27100771.224600.353304.418603.51630HepG2DAZAP1
VIMPENSG00000131871.10397.36020501.44210-0.335602.597001.78630HepG2DDX19B
VIMPENSG00000131871.10659.99880430.442800.616505.238004.33370HepG2DDX21
VIMPENSG00000131871.101400.21210896.148800.643706.347005.43760HepG2DDX3X
VIMPENSG00000131871.10712.10600519.928500.453703.157102.08340HepG2DDX5
VIMPENSG00000131871.10676.40100518.723800.382803.281202.55290HepG2DKC1
VIMPENSG00000131871.10458.21150740.03740-0.691605.806504.96530HepG2EIF2S1
VIMPENSG00000131871.101147.56990817.829400.488603.412002.70320HepG2EIF4A3
VIMPENSG00000131871.10922.40350760.879600.277602.401601.61360HepG2EIF4G1
VIMPENSG00000131871.10416.30670641.38210-0.623503.521702.66090HepG2FIP1L1
VIMPENSG00000131871.10580.17650765.45150-0.399802.302301.69250HepG2G3BP1
VIMPENSG00000131871.10595.57760433.242700.459002.704801.70020HepG2GNB2L1
VIMPENSG00000131871.10290.33460535.45010-0.883007.012306.02410HepG2GPKOW
VIMPENSG00000131871.10564.57650702.51990-0.315402.732102.06210HepG2HNRNPL
VIMPENSG00000131871.10742.85990510.987500.539701.995901.45280HepG2HNRNPLL
VIMPENSG00000131871.10327.42540442.65660-0.435002.307601.43890HepG2HNRNPM
VIMPENSG00000131871.10294.76200386.35780-0.390402.385701.81960HepG2HNRNPU
VIMPENSG00000131871.101042.17240778.065300.421503.013602.31380HepG2IGF2BP2
VIMPENSG00000131871.101409.18860825.440500.771508.882207.72010HepG2MAGOH
VIMPENSG00000131871.10644.48180830.06090-0.365101.927901.39660HepG2MATR3
VIMPENSG00000131871.10655.57550519.300000.336102.314601.57180HepG2MSI2
VIMPENSG00000131871.10289.84730455.27690-0.651502.345301.34650HepG2NONO
VIMPENSG00000131871.10620.34160453.068900.453202.881702.11770HepG2NSUN2
VIMPENSG00000131871.10780.95990522.880000.578702.764301.87670HepG2PABPC1
VIMPENSG00000131871.10561.29140830.01130-0.564406.716605.93740HepG2PTBP1
VIMPENSG00000131871.101170.49340774.388400.595907.917606.81010HepG2PUM2
VIMPENSG00000131871.10488.93640898.89100-0.8785013.6004012.36480HepG2QKI
VIMPENSG00000131871.10666.89460432.590700.624402.936102.21140HepG2RAVER1
VIMPENSG00000131871.10540.57590687.64140-0.347202.696101.84730HepG2RBM15
VIMPENSG00000131871.10516.96820923.71050-0.8374014.2438013.19660HepG2NELFE
VIMPENSG00000131871.10532.91270860.33320-0.6910010.115009.05100HepG2RECQL
VIMPENSG00000131871.10699.85890344.071601.0243018.9257017.46210HepG2SAFB2
VIMPENSG00000131871.10688.67750505.792000.445202.989502.25640HepG2SF3B1
VIMPENSG00000131871.10696.21260864.12220-0.311702.642202.06220HepG2SF3B4
VIMPENSG00000131871.101064.64500562.776800.919602.049201.38100HepG2SNRNP70
VIMPENSG00000131871.10915.25400767.560100.253802.182701.72120HepG2SRFBP1
VIMPENSG00000131871.10333.40720544.19040-0.706804.384303.09790HepG2SRSF3
VIMPENSG00000131871.10564.05790733.80790-0.379603.671703.05560HepG2SRSF9
VIMPENSG00000131871.10818.38930666.425000.296202.653002.14710HepG2SSB
VIMPENSG00000131871.10642.61960493.719000.380202.187201.57600HepG2SUPV3L1
VIMPENSG00000131871.10481.21030810.75360-0.7526010.362009.38720HepG2TAF15
VIMPENSG00000131871.10365.06720497.98420-0.447902.565801.86360HepG2TARDBP
VIMPENSG00000131871.10502.41870330.943600.602204.230103.03290HepG2TFIP11
VIMPENSG00000131871.10491.84970378.773600.376802.784902.21950HepG2TRIM56
VIMPENSG00000131871.10702.21080548.778800.355602.146501.58640HepG2U2AF1
VIMPENSG00000131871.10435.35230830.34890-0.931502.640501.67600HepG2U2AF2
VIMPENSG00000131871.10456.93800592.62510-0.375102.706502.11490HepG2UTP3
VIMPENSG00000131871.101624.61090964.946900.7515010.423209.39390K562AQR
VIMPENSG00000131871.10895.10670701.195300.352103.076502.11140K562ATP5C1
VIMPENSG00000131871.10788.10050600.755600.391502.753801.47460K562CIRBP
VIMPENSG00000131871.101137.13480750.502900.599407.510306.50770K562DDX47
VIMPENSG00000131871.10993.48160719.190200.466005.362604.09050K562DKC1
VIMPENSG00000131871.10780.47230646.986000.270501.957201.33370K562EIF2S2
VIMPENSG00000131871.10330.55720195.536800.757403.251102.15350K562EIF3A
VIMPENSG00000131871.10620.96230402.572300.625204.025303.07490K562EIF3G
VIMPENSG00000131871.10661.00110463.741400.511204.043303.05240K562EIF4A3
VIMPENSG00000131871.10277.64540379.38750-0.450402.644401.40890K562EXOSC5
VIMPENSG00000131871.10212.22380307.66930-0.535802.511801.44460K562FKBP4
VIMPENSG00000131871.10666.94910482.271100.467604.321603.58940K562FXR1
VIMPENSG00000131871.10741.05290559.918300.404302.535901.35870K562HNRNPK
VIMPENSG00000131871.101216.89560720.299900.756409.177707.74410K562HSPD1
VIMPENSG00000131871.10731.20040589.084900.311702.026601.30280K562MAGOH
VIMPENSG00000131871.10468.42780600.15060-0.357501.971201.32810K562NSUN2
VIMPENSG00000131871.10611.87300378.173600.694105.706404.62860K562PRPF8
VIMPENSG00000131871.101508.887601055.856800.515005.029703.93040K562PUF60
VIMPENSG00000131871.10930.96930385.253601.2728017.3382015.28280K562RPS19
VIMPENSG00000131871.10586.91940443.055900.405602.993302.10280K562SF3B4
VIMPENSG00000131871.10799.62490561.013800.511204.780203.85570K562SRSF1
VIMPENSG00000131871.10523.85750371.273400.496603.745502.79000K562SYNCRIP
VIMPENSG00000131871.10273.18540387.56980-0.504602.550901.57870K562UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VIMP is not available on ENCORE database.





1 RBPs can affect the splicing of VIMP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSVIMPENSG00000131871.10chr15-1018167451018169071018167451018168801018175461018177000.186000.000000.00000longerK562AQR
RIVIMPENSG00000131871.10chr15-1018147961018155661018147961018148861018154591018155660.065000.000000.00000includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VIMP is not avaliable on ENCORE database.