TRIOBP

General Information

Gene Name       : TRIOBP
Gene ID             : ENSG00000100106.20
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRIOBP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRIOBPENSG00000100106.205.598.917.25ENCSR000AEF
HepG2TRIOBPENSG00000100106.2014.178.2311.20ENCSR985KAT
K562TRIOBPENSG00000100106.204.743.674.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRIOBP is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRIOBP RNA is bound by 15 proteins.  







eCLIP assay for TRIOBP is not avaliable on ENCORE database.





15 proteins are bound to TRIOBP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223815403038154114+3'-UTR,CDS4.212094.68902HepG2PPIG
chr223816867838168775+3'-UTR,CDS,intron-Proximal3.576738.19044HepG2GRWD1
chr223815381238153883+3'-UTR,CDS3.107784.51003HepG2PPIG
chr223816502438165064+3'-UTR,CDS,intron-Proximal4.123683.16051HepG2PPIG
chr223817013538170198+3'-UTR5.940637.49093K562PABPC4
chr223815119038151277+3'-UTR,CDS,intron-Proximal4.815226.26248HepG2PRPF8
chr223815109938151141+3'-UTR,CDS,intron-Proximal3.623684.13746HepG2PPIG
chr223815114138151205+3'-UTR,CDS,intron-Proximal4.761506.16445HepG2PPIG
chr223816871238168872+3'-UTR,CDS,intron-Distal,intron-Proximal3.730268.45537HepG2PRPF8
chr223817032238170445+3'-UTR3.9682314.28153HepG2QKI
chr223817018838170253+3'-UTR3.643804.28120HepG2AGGF1
chr223816994638170070+3'-UTR5.8508532.95921K562AGGF1
chr223816536638165468+3'-UTR,CDS,intron-Proximal3.872965.34978HepG2PRPF8
chr223816994338170010+3'-UTR3.4765216.11426HepG2HNRNPL
chr223816413438164184+3'-UTR,CDS,intron-Proximal3.478933.86355HepG2PPIG
chr223815516338155267+3'-UTR,CDS4.015935.52342HepG2PPIG
chr223816990038169943+3'-UTR3.1670420.54909HepG2HNRNPL
chr223817001038170043+3'-UTR4.514909.29579HepG2HNRNPL
chr223815518338155347+3'-UTR,CDS,intron-Proximal3.232676.41344HepG2PRPF8
chr223816865338168780+3'-UTR,CDS,intron-Proximal3.192757.84823HepG2PPIG
chr223815156838151689+3'-UTR,CDS,intron-Proximal3.272783.80299HepG2GRWD1
chr223815362838153691+3'-UTR,CDS4.439934.67689HepG2PPIG
chr223816994238170029+3'-UTR4.484068.89873K562HNRNPL
chr223816993338170055+3'-UTR4.859905.24810K562GTF2F1
chr223816986838169946+3'-UTR3.9939214.39484K562AGGF1
chr223816991238170042+3'-UTR3.681635.53636HepG2GTF2F1
chr223816164938161678+3'-UTR,CDS,intron-Proximal4.396877.56947K562SF3B4
chr223815399938154105+3'-UTR,CDS4.238704.69889HepG2GRWD1
chr223817014938170211+3'-UTR3.844427.58271K562AGGF1
chr223812148038121569+5'-UTR,CDS4.224603.06084HepG2HNRNPK
chr223814282038142886+intron-Distal3.408794.69054HepG2CSTF2T
chr223814346138143514+intron-Distal3.485934.41726HepG2NKRF
chr223816162838161649+intron-Proximal5.276727.41223K562SF3B4
chr223816160138161673+intron-Proximal5.895696.39134HepG2SF3A3
chr223815122238151283+intron-Proximal3.080563.27165HepG2RBFOX2
chr223815122238151278+intron-Proximal5.126925.24235HepG2EFTUD2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRIOBP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRIOBP is not available on ENCORE database.

  • 95 RBPs can affect the levels of TRIOBP.  








The Knockdown/knockout RNA-Seq assay for TRIOBP is not available on ENCORE database.





95 RBPs can affect the gene expression of TRIOBP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRIOBPENSG00000100106.15683.25720548.255200.317502.708802.10700HepG2ACO1
TRIOBPENSG00000100106.15774.50630540.378700.519203.435802.28230HepG2AKAP8
TRIOBPENSG00000100106.151008.52730786.121600.359302.653802.06660HepG2BOP1
TRIOBPENSG00000100106.15261.76840363.96670-0.475502.318101.60540HepG2CIRBP
TRIOBPENSG00000100106.15354.19000548.03970-0.629807.389106.40010HepG2CKAP4
TRIOBPENSG00000100106.15808.42880381.083101.084909.705408.62440HepG2DDX6
TRIOBPENSG00000100106.15659.50050524.506700.330302.531101.87940HepG2DKC1
TRIOBPENSG00000100106.15312.27790216.871300.525903.232002.47610HepG2DNAJC21
TRIOBPENSG00000100106.15362.01420214.969900.751807.435306.43750HepG2DNAJC2
TRIOBPENSG00000100106.15508.70770366.228100.474002.608502.03300HepG2EIF2S1
TRIOBPENSG00000100106.151155.74140815.348800.503206.847505.97190HepG2ETF1
TRIOBPENSG00000100106.151008.06260733.111100.459402.796502.02140HepG2FIP1L1
TRIOBPENSG00000100106.151659.91130722.919101.199102.501901.53880HepG2FTO
TRIOBPENSG00000100106.15705.72120408.464200.788807.203006.12140HepG2FXR1
TRIOBPENSG00000100106.15579.62360378.820900.613504.170903.36390HepG2G3BP1
TRIOBPENSG00000100106.15624.47880402.283900.634304.749303.56750HepG2G3BP2
TRIOBPENSG00000100106.15387.00540248.735200.637602.680501.79800HepG2GEMIN5
TRIOBPENSG00000100106.15358.93300218.949200.713003.340902.63900HepG2HNRNPA1
TRIOBPENSG00000100106.15545.33440243.545001.1629011.3835010.05710HepG2HNRNPC
TRIOBPENSG00000100106.15582.17910447.958100.378003.293202.51590HepG2HNRNPF
TRIOBPENSG00000100106.15401.75380241.934500.731606.934806.01210HepG2HNRNPU
TRIOBPENSG00000100106.15351.55400247.127300.508403.851303.00080HepG2ILF2
TRIOBPENSG00000100106.15447.26040250.746600.834805.850904.02040HepG2KHDRBS1
TRIOBPENSG00000100106.15647.43170408.607500.663905.058104.17990HepG2MAGOH
TRIOBPENSG00000100106.15457.05070593.37930-0.376602.253101.51950HepG2MSI2
TRIOBPENSG00000100106.15608.73220386.667500.654602.615201.87380HepG2NOL12
TRIOBPENSG00000100106.15401.05310239.468100.743906.936305.69300HepG2PARN
TRIOBPENSG00000100106.15511.41420404.328600.338901.900301.38100HepG2PCBP1
TRIOBPENSG00000100106.15400.89430231.059200.794903.791302.34570HepG2PKM
TRIOBPENSG00000100106.15374.28220215.785400.794407.321906.16450HepG2PPIL4
TRIOBPENSG00000100106.15158.15050236.81300-0.582502.024501.32940HepG2PRPF8
TRIOBPENSG00000100106.15742.96950411.442900.8525013.0333012.02060HepG2PTBP1
TRIOBPENSG00000100106.15497.36030369.089200.430202.473901.90620HepG2PUF60
TRIOBPENSG00000100106.15679.73660391.782500.7948012.7197011.64500HepG2PUM1
TRIOBPENSG00000100106.15609.73620391.510000.639004.730203.86470HepG2PUM2
TRIOBPENSG00000100106.15766.78140558.419400.457405.295604.49340HepG2PUS1
TRIOBPENSG00000100106.15640.31260445.553000.523104.701403.91840HepG2QKI
TRIOBPENSG00000100106.15501.70370307.486500.706204.678702.37460HepG2RBM14
TRIOBPENSG00000100106.15517.38010681.47070-0.397403.310602.75790HepG2RBM22
TRIOBPENSG00000100106.15518.80990347.130600.579602.396401.48150HepG2RBM27
TRIOBPENSG00000100106.15892.57820457.877000.9629017.6010016.46210HepG2NELFE
TRIOBPENSG00000100106.15649.19580426.485500.606106.823305.91770HepG2RECQL
TRIOBPENSG00000100106.15502.48300271.929800.885705.539504.70290HepG2RPS19
TRIOBPENSG00000100106.15495.43270320.104200.630003.125202.27450HepG2RPS2
TRIOBPENSG00000100106.15449.09340264.228000.765104.677603.63940HepG2RPS3A
TRIOBPENSG00000100106.15362.32420215.450700.749806.875605.92770HepG2SAFB2
TRIOBPENSG00000100106.15811.70710427.268300.925702.618001.31280HepG2SF1
TRIOBPENSG00000100106.15417.84800739.12760-0.822806.953505.85120HepG2SF3A3
TRIOBPENSG00000100106.15612.28970772.86650-0.336002.015901.40860HepG2SF3B1
TRIOBPENSG00000100106.15514.39430353.853900.539604.962604.06550HepG2SLBP
TRIOBPENSG00000100106.15425.55090251.247400.760108.113507.10240HepG2SMN1
TRIOBPENSG00000100106.15569.35420859.93870-0.594903.212602.36850HepG2SNRNP70
TRIOBPENSG00000100106.15935.48890769.678200.281402.283501.81430HepG2SRFBP1
TRIOBPENSG00000100106.15700.40880364.395500.9426015.1757013.88050HepG2SRSF5
TRIOBPENSG00000100106.15517.39440363.749400.508204.876904.18290HepG2SRSF9
TRIOBPENSG00000100106.15796.63740668.231800.253501.919501.47240HepG2SSB
TRIOBPENSG00000100106.15694.71490414.440600.7452010.621509.53550HepG2SUCLG1
TRIOBPENSG00000100106.15556.98140235.067601.2445018.5594017.47550HepG2TIAL1
TRIOBPENSG00000100106.15440.07860237.187100.8916010.512409.51880HepG2TRIM56
TRIOBPENSG00000100106.15707.40470360.548600.972205.264304.01940HepG2TUFM
TRIOBPENSG00000100106.15346.98920627.15580-0.853907.779006.72960HepG2U2AF1
TRIOBPENSG00000100106.15604.16450381.611500.662704.177203.13800HepG2UBE2L3
TRIOBPENSG00000100106.15469.07590632.85210-0.432003.830603.14390HepG2UTP3
TRIOBPENSG00000100106.15447.97540301.031400.573401.986301.36430HepG2XRN2
TRIOBPENSG00000100106.15170.23730105.775100.686402.887401.90790K562BCLAF1
TRIOBPENSG00000100106.15252.46770108.825801.214007.393005.94090K562BOP1
TRIOBPENSG00000100106.15196.55850115.708500.764403.595102.70230K562CPSF6
TRIOBPENSG00000100106.15189.88650123.500600.620502.742501.70490K562DDX3X
TRIOBPENSG00000100106.15170.27610266.12770-0.644203.971502.89700K562DKC1
TRIOBPENSG00000100106.15197.19690135.646300.539702.513101.37280K562EIF2S1
TRIOBPENSG00000100106.15257.08800150.609400.771405.016604.08920K562EIF2S2
TRIOBPENSG00000100106.15344.20370248.370700.470702.986202.01080K562EIF4G2
TRIOBPENSG00000100106.15188.00920116.374000.691903.057402.16390K562FIP1L1
TRIOBPENSG00000100106.15244.31540117.739501.053003.266202.33190K562FMR1
TRIOBPENSG00000100106.15234.1478099.798701.230207.923606.29070K562FTO
TRIOBPENSG00000100106.1515.5979045.81070-1.554302.976702.24040K562G3BP2
TRIOBPENSG00000100106.15136.0951075.978800.840802.729501.32470K562GEMIN5
TRIOBPENSG00000100106.15202.90940110.469400.877104.334603.34720K562GPKOW
TRIOBPENSG00000100106.15189.4402096.043100.979904.047403.34240K562HNRNPC
TRIOBPENSG00000100106.1541.1414084.22500-1.033702.794101.55190K562HNRNPK
TRIOBPENSG00000100106.15299.91120204.431500.552803.415802.42500K562HNRNPU
TRIOBPENSG00000100106.15141.0699085.770900.717702.918501.68810K562IGF2BP3
TRIOBPENSG00000100106.15182.10400262.45290-0.527302.201801.47600K562KIF1C
TRIOBPENSG00000100106.15176.3959094.336800.902802.349101.49770K562KRR1
TRIOBPENSG00000100106.15140.9462088.446800.672202.625401.72810K562MATR3
TRIOBPENSG00000100106.15199.99000107.832000.891004.570403.42470K562METAP2
TRIOBPENSG00000100106.15242.93140175.887500.465802.262601.52870K562MTPAP
TRIOBPENSG00000100106.15101.58120206.08000-1.020604.489403.27950K562NAA15
TRIOBPENSG00000100106.15134.5645074.772700.847602.762201.47190K562NONO
TRIOBPENSG00000100106.15297.68100153.561400.954905.999104.77030K562PCBP3
TRIOBPENSG00000100106.15374.65380255.206000.553803.339401.76210K562PNPT1
TRIOBPENSG00000100106.15216.70700117.788000.879503.598002.67840K562POLR2G
TRIOBPENSG00000100106.15149.6200086.132700.796602.486401.63440K562PSIP1
TRIOBPENSG00000100106.15142.3019086.105300.724702.989202.30140K562PTBP1
TRIOBPENSG00000100106.15383.87900282.427200.442702.724001.77220K562PUM2
TRIOBPENSG00000100106.15158.33600238.96070-0.593802.970202.35990K562RBM15
TRIOBPENSG00000100106.15145.5602080.485300.854703.504501.87950K562RBM34
TRIOBPENSG00000100106.15143.9513086.888100.728202.843901.73440K562NELFE
TRIOBPENSG00000100106.15138.0323073.679100.905603.301701.48650K562SRP68
TRIOBPENSG00000100106.15141.5049084.411400.745202.740802.03650K562SRSF1
TRIOBPENSG00000100106.15154.8565083.640900.888603.373302.19610K562SRSF4
TRIOBPENSG00000100106.15153.4504079.718900.944702.793501.73930K562SRSF5
TRIOBPENSG00000100106.15171.9406085.430901.009005.180504.19640K562TARDBP
TRIOBPENSG00000100106.15164.2997082.407500.995404.887003.75280K562TIA1
TRIOBPENSG00000100106.15143.0699082.833600.788302.135401.32430K562TIAL1
TRIOBPENSG00000100106.15149.3025080.863700.884603.589302.31380K562TRA2A
TRIOBPENSG00000100106.15333.75990241.877900.464402.675601.42900K562TROVE2
TRIOBPENSG00000100106.15150.4203075.536900.993603.868602.64550K562UCHL5
TRIOBPENSG00000100106.15152.6387076.961500.987804.029402.46050K562XRN2
TRIOBPENSG00000100106.15353.56470246.580900.519802.999702.09620K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRIOBP is not available on ENCORE database.






No RBPs affect the alternative splcing events of TRIOBP on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TRIOBP is not avaliable on ENCORE database.