TMEM9

General Information

Gene Name       : TMEM9
Gene ID             : ENSG00000116857.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM9)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM9ENSG00000116857.162.185.503.84ENCSR000AEF
HepG2TMEM9ENSG00000116857.1659.7321.6140.67ENCSR985KAT
K562TMEM9ENSG00000116857.1637.6626.0131.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM9 is not avaliable on ENCORE database.



Proteins bound to RNA

  • TMEM9 RNA is bound by 33 proteins.  







eCLIP assay for TMEM9 is not avaliable on ENCORE database.





33 proteins are bound to TMEM9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1201104101201104194-3'-UTR,intron-Distal6.7006528.59572HepG2UPF1
chr1201104501201104622-3'-UTR,intron-Distal,intron-Proximal6.8569862.65596HepG2UPF1
chr1201104443201104502-3'-UTR,intron-Distal6.9765863.17637K562UPF1
chr1201104887201104944-3'-UTR,CDS,intron-Distal,intron-Proximal4.0541310.69038K562SND1
chr1201104519201104570-3'-UTR,intron-Distal,intron-Proximal3.973648.87615K562AKAP1
chr1201104163201104203-3'-UTR,intron-Distal4.187473.49179K562DHX30
chr1201104581201104626-3'-UTR,intron-Distal,intron-Proximal4.002535.16716K562PABPC4
chr1201104427201104443-3'-UTR,intron-Distal3.174787.82301K562YBX3
chr1201104508201104573-3'-UTR,intron-Distal,intron-Proximal3.3951011.68474K562FAM120A
chr1201104217201104270-3'-UTR,intron-Distal5.7056327.60090HepG2UPF1
chr1201104650201104678-3'-UTR,intron-Distal,intron-Proximal6.1710510.19274K562PABPC4
chr1201103924201104009-3'-UTR,intron-Distal7.7576455.18190K562UPF1
chr1201104487201104573-3'-UTR,intron-Distal,intron-Proximal3.875465.78219HepG2FAM120A
chr1201104528201104633-3'-UTR,intron-Distal,intron-Proximal3.405515.66400HepG2DDX55
chr1201104587201104662-3'-UTR,intron-Distal,intron-Proximal5.702239.98281HepG2SUB1
chr1201104099201104141-3'-UTR,intron-Distal3.952733.99290K562DHX30
chr1201104826201104897-3'-UTR,CDS,intron-Distal,intron-Proximal5.133476.69883K562RPS3
chr1201104443201104497-3'-UTR,intron-Distal4.4051720.82594K562YBX3
chr1201104519201104578-3'-UTR,intron-Distal,intron-Proximal3.592444.53936K562METAP2
chr1201104446201104501-3'-UTR,intron-Distal3.738999.98236K562FAM120A
chr1201104377201104467-3'-UTR,intron-Distal3.8790113.25979HepG2LIN28B
chr1201104074201104136-3'-UTR,intron-Distal5.3978842.44833K562UPF1
chr1201104439201104501-3'-UTR,intron-Distal5.8615132.54840HepG2AKAP1
chr1201104371201104429-3'-UTR,intron-Distal5.3335133.97891K562LIN28B
chr1201104237201104357-3'-UTR,intron-Distal5.6172241.51470HepG2AKAP1
chr1201104300201104308-3'-UTR,intron-Distal4.1871813.17111K562YBX3
chr1201104502201104623-3'-UTR,intron-Distal,intron-Proximal6.4466983.64165K562UPF1
chr1201104274201104356-3'-UTR,intron-Distal4.6658851.07720K562UPF1
chr1201112988201113038-3'-UTR,CDS,intron-Distal3.5799531.43093K562YBX3
chr1201104501201104640-3'-UTR,intron-Distal,intron-Proximal6.5641552.40160HepG2AKAP1
chr1201104508201104632-3'-UTR,intron-Distal,intron-Proximal3.3756713.68786HepG2LARP4
chr1201104022201104040-3'-UTR,intron-Distal4.492635.86108K562YBX3
chr1201104146201104231-3'-UTR,intron-Distal5.1002148.72844K562UPF1
chr1201104705201104777-3'-UTR,intron-Distal,intron-Proximal4.930707.26512HepG2LARP4
chr1201104522201104572-3'-UTR,intron-Distal,intron-Proximal3.513985.18092K562DDX6
chr1201104819201104910-3'-UTR,CDS,intron-Distal,intron-Proximal6.7258918.01482HepG2SND1
chr1201104828201104885-3'-UTR,CDS,intron-Distal,intron-Proximal3.916158.36911K562SND1
chr1201104854201104939-3'-UTR,CDS,intron-Distal,intron-Proximal4.284424.69712HepG2G3BP1
chr1201112946201112968-3'-UTR,CDS,intron-Distal,intron-Proximal3.779864.67599HepG2SND1
chr1201103934201104017-3'-UTR,intron-Distal4.264254.33501K562NOLC1
chr1201104452201104501-3'-UTR,intron-Distal5.5387825.52498HepG2UPF1
chr1201104573201104626-3'-UTR,intron-Distal,intron-Proximal4.541729.12746K562FAM120A
chr1201104397201104439-3'-UTR,intron-Distal4.5993412.24259HepG2AKAP1
chr1201104102201104190-3'-UTR,intron-Distal6.2501214.43202K562AKAP1
chr1201112968201113057-3'-UTR,CDS,intron-Distal4.2381010.36200HepG2SND1
chr1201104910201104944-3'-UTR,CDS,intron-Distal,intron-Proximal5.864409.43050HepG2SND1
chr1201104423201104443-3'-UTR,intron-Distal5.3866329.00684K562UPF1
chr1201104429201104443-3'-UTR,intron-Distal4.2676814.66793K562LIN28B
chr1201104387201104423-3'-UTR,intron-Distal4.3230719.42884K562UPF1
chr1201104079201104219-3'-UTR,intron-Distal5.8324146.42796HepG2AKAP1
chr1201104231201104274-3'-UTR,intron-Distal5.2364033.05812K562UPF1
chr1201103918201103981-3'-UTR,intron-Distal4.5796712.92039HepG2SUB1
chr1201104258201104352-3'-UTR,intron-Distal4.2361114.40914K562AKAP1
chr1201104311201104343-3'-UTR,intron-Distal3.9172414.36418K562YBX3
chr1201104520201104587-3'-UTR,intron-Distal,intron-Proximal3.580404.55636HepG2PRPF4
chr1201104270201104362-3'-UTR,intron-Distal6.7967984.48639HepG2UPF1
chr1201104443201104508-3'-UTR,intron-Distal4.282977.16588HepG2LARP4
chr1201104731201104798-3'-UTR,CDS,intron-Distal,intron-Proximal5.4037611.62664K562RPS3
chr1201112960201113032-3'-UTR,CDS,intron-Distal4.1580112.86509K562SND1
chr1201104683201104762-3'-UTR,intron-Distal,intron-Proximal5.2280213.04183K562PABPC4
chr1201123372201123438-5'-UTR,intron-Distal4.5795815.68007HepG2PRPF4
chr1201123077201123146-5'-UTR,intron-Distal,intron-Proximal3.404674.59965HepG2PRPF4
chr1201123456201123542-5'-UTR,intron-Distal3.261573.84340K562CSTF2T
chr1201123334201123421-5'-UTR,intron-Distal3.625274.37279HepG2CSTF2T
chr1201123065201123149-5'-UTR,intron-Distal,intron-Proximal4.081714.34573HepG2SF3B4
chr1201123466201123543-5'-UTR,intron-Distal3.265503.39477K562BUD13
chr1201123572201123597-5'-UTR,intron-Distal,intron-Proximal4.741475.47892K562DDX3X
chr1201123059201123146-5'-UTR,intron-Distal,intron-Proximal3.304733.48391K562SMNDC1
chr1201123439201123540-5'-UTR,intron-Distal5.030877.49410HepG2NCBP2
chr1201123042201123090-5'-UTR,CDS,intron-Distal,intron-Proximal3.387515.07384K562DROSHA
chr1201123452201123544-5'-UTR,intron-Distal5.3496111.71790HepG2PRPF4
chr1201123064201123108-5'-UTR,intron-Distal,intron-Proximal5.799477.28294K562AQR
chr1201123054201123082-5'-UTR,intron-Distal4.9652513.83562HepG2DDX3X
chr1201123082201123088-5'-UTR,intron-Distal,intron-Proximal5.1591411.72256HepG2DDX3X
chr1201123185201123246-5'-UTR,intron-Distal,intron-Proximal4.009483.85108HepG2GTF2F1
chr1201123050201123147-5'-UTR,CDS,intron-Distal,intron-Proximal3.508848.79250K562SF3B4
chr1201123459201123558-5'-UTR,intron-Distal,intron-Proximal3.049284.08293HepG2FASTKD2
chr1201123301201123372-5'-UTR,intron-Distal5.3397220.10760HepG2PRPF4
chr1201123482201123548-5'-UTR,intron-Distal,intron-Proximal4.589425.54349HepG2GTF2F1
chr1201123311201123419-5'-UTR,intron-Distal5.3653110.48744HepG2GTF2F1
chr1201123296201123494-5'-UTR,intron-Distal5.2872317.06502K562GTF2F1
chr1201123571201123605-5'-UTR,intron-Distal,intron-Proximal6.238667.49422HepG2DDX3X
chr1201123040201123089-5'-UTR,CDS,intron-Distal,intron-Proximal4.2515213.76551K562DDX3X
chr1201123453201123573-5'-UTR,intron-Distal,intron-Proximal5.6045915.88168K562AQR
chr1201120888201120975-CDS,intron-Distal,intron-Proximal4.009804.58135HepG2YBX3
chr1201122989201123031-CDS,intron-Distal5.0127511.72256HepG2DDX3X
chr1201122942201122985-CDS,intron-Distal,intron-Proximal4.916114.13847K562AQR
chr1201122979201123030-CDS,intron-Distal,intron-Proximal3.697225.00225K562GEMIN5
chr1201120936201120982-CDS,intron-Distal,intron-Proximal4.031785.24452HepG2PPIG
chr1201113032201113079-CDS,intron-Distal4.4352911.67493K562SND1
chr1201115975201116032-CDS,intron-Distal,intron-Proximal4.429715.54524HepG2SF3B4
chr1201122982201123040-CDS,intron-Distal,intron-Proximal4.2370116.88396K562DDX3X
chr1201115871201115923-CDS,intron-Distal,intron-Proximal3.321478.81743K562YBX3
chr1201115866201115948-CDS,intron-Distal,intron-Proximal4.0804010.99925K562SND1
chr1201120940201120964-CDS,intron-Distal3.048833.59926K562DDX3X
chr1201115867201115978-CDS,intron-Distal,intron-Proximal3.461428.86547HepG2SND1
chr1201115948201115977-CDS,intron-Distal,intron-Proximal3.224916.08510K562SND1
chr1201113038201113076-CDS,intron-Distal4.3860435.51879K562YBX3
chr1201115972201116027-CDS,intron-Distal,intron-Proximal3.314655.56719K562SF3B4
chr1201122984201123032-CDS,intron-Distal,intron-Proximal4.662928.11444HepG2SUB1
chr1201120964201120982-CDS,intron-Distal,intron-Proximal3.734227.89340K562DDX3X
chr1201122980201123029-CDS,intron-Distal,intron-Proximal3.173685.47500HepG2PPIG
chr1201108542201108656-intron-Distal3.280203.78503K562FUS
chr1201115487201115594-intron-Distal3.767293.06015K562MATR3
chr1201114279201114381-intron-Distal4.090613.34601K562HNRNPK
chr1201110088201110193-intron-Distal3.628763.19850K562FUS
chr1201121220201121369-intron-Distal3.743475.57983K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM9 is not available on ENCORE database.

  • 91 RBPs can affect the levels of TMEM9.  








The Knockdown/knockout RNA-Seq assay for TMEM9 is not available on ENCORE database.





91 RBPs can affect the gene expression of TMEM9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM9ENSG00000116857.121246.807901654.61700-0.408302.434101.93190HepG2AKAP1
TMEM9ENSG00000116857.12723.56340531.139600.445902.527601.53020HepG2AKAP8
TMEM9ENSG00000116857.12381.01550590.94320-0.633205.418703.52720HepG2ATP5C1
TMEM9ENSG00000116857.12615.84570745.06260-0.274802.348901.72820HepG2CKAP4
TMEM9ENSG00000116857.12480.31980316.231000.602904.061603.24320HepG2CPSF6
TMEM9ENSG00000116857.12467.26130681.27720-0.544003.336501.93280HepG2DDX27
TMEM9ENSG00000116857.12780.833701584.77810-1.021209.064507.98760HepG2DDX3X
TMEM9ENSG00000116857.12165.36590359.10220-1.118705.962104.54950HepG2DDX59
TMEM9ENSG00000116857.122196.627201361.874800.689607.039506.09250HepG2DDX6
TMEM9ENSG00000116857.12589.42200712.99590-0.274602.005501.41400HepG2DKC1
TMEM9ENSG00000116857.12673.48680456.389900.561306.003905.00000HepG2DNAJC21
TMEM9ENSG00000116857.12298.89730496.84880-0.733206.828005.07680HepG2EIF2S2
TMEM9ENSG00000116857.12335.32500440.70860-0.394302.235001.41450HepG2EIF3D
TMEM9ENSG00000116857.12860.695501408.36540-0.710404.061803.23590HepG2EIF4B
TMEM9ENSG00000116857.121180.44270890.149000.407103.355702.46400HepG2EIF4G2
TMEM9ENSG00000116857.121619.838501390.042500.220601.993901.46560HepG2ETF1
TMEM9ENSG00000116857.12516.25970705.45010-0.450403.574402.68680HepG2FUBP3
TMEM9ENSG00000116857.121074.430801437.64510-0.420102.450201.61430HepG2G3BP2
TMEM9ENSG00000116857.12479.63800358.482900.419902.019401.46710HepG2GPKOW
TMEM9ENSG00000116857.12733.99310512.508800.518104.020403.19540HepG2HNRNPC
TMEM9ENSG00000116857.121153.63360857.919000.427206.901305.88040HepG2HNRNPL
TMEM9ENSG00000116857.121013.273001375.86780-0.441302.618101.95930HepG2IGF2BP2
TMEM9ENSG00000116857.12643.421601291.75930-1.005504.182802.97640HepG2IGF2BP3
TMEM9ENSG00000116857.12875.33020646.444100.437202.919401.67140HepG2LIN28B
TMEM9ENSG00000116857.12881.555801460.22570-0.728105.114704.23170HepG2MAGOH
TMEM9ENSG00000116857.12962.109301468.27610-0.609903.910503.17210HepG2MATR3
TMEM9ENSG00000116857.12856.952001502.76280-0.810306.468405.51790HepG2NCBP2
TMEM9ENSG00000116857.121136.68510933.929300.283302.489601.76860HepG2NOL12
TMEM9ENSG00000116857.12427.73940668.82940-0.644903.185402.00870HepG2NONO
TMEM9ENSG00000116857.12855.157001318.59120-0.6247011.5887010.48460HepG2PCBP1
TMEM9ENSG00000116857.12408.87490573.16110-0.487302.295201.34830HepG2PCBP2
TMEM9ENSG00000116857.12565.15480454.095700.315502.125601.47220HepG2PPIL4
TMEM9ENSG00000116857.12557.73690424.995900.392002.526801.78390HepG2PRPF4
TMEM9ENSG00000116857.12420.88100561.58750-0.416102.428401.66980HepG2PRPF8
TMEM9ENSG00000116857.12746.048801341.76350-0.8468019.5692018.36230HepG2PTBP1
TMEM9ENSG00000116857.121085.29330891.539000.283602.039201.51550HepG2PUF60
TMEM9ENSG00000116857.121325.40510945.726300.486806.052105.07260HepG2PUM2
TMEM9ENSG00000116857.12622.44580759.08200-0.286302.417601.83160HepG2PUS1
TMEM9ENSG00000116857.121201.157201453.06140-0.274702.349701.76580HepG2QKI
TMEM9ENSG00000116857.12352.24680552.95010-0.650602.937402.21240HepG2RAVER1
TMEM9ENSG00000116857.121189.018401493.21430-0.328703.810103.19500HepG2NELFE
TMEM9ENSG00000116857.121048.207901390.79810-0.408005.448704.62040HepG2RECQL
TMEM9ENSG00000116857.12313.27680555.51050-0.826406.629905.47080HepG2RRP9
TMEM9ENSG00000116857.12654.47320453.396800.529506.078505.17970HepG2SAFB2
TMEM9ENSG00000116857.12305.50510430.38590-0.494402.940001.96890HepG2SERBP1
TMEM9ENSG00000116857.12930.049601396.86350-0.5868010.245709.21480HepG2SF3B4
TMEM9ENSG00000116857.12602.96430376.775600.678303.652402.75060HepG2SNRNP70
TMEM9ENSG00000116857.121117.591801312.21770-0.231602.517402.03160HepG2SRFBP1
TMEM9ENSG00000116857.121056.552801458.05800-0.464707.184606.50590HepG2SRSF1
TMEM9ENSG00000116857.12249.63830364.34270-0.545502.321701.41480HepG2SRSF3
TMEM9ENSG00000116857.12614.22480446.534300.459903.054302.07210HepG2SUPT6H
TMEM9ENSG00000116857.12978.531501310.65620-0.421604.938404.22340HepG2TAF15
TMEM9ENSG00000116857.12639.79080494.720300.370902.046301.60300HepG2TIAL1
TMEM9ENSG00000116857.12654.40050499.127300.390703.574902.95190HepG2TRIM56
TMEM9ENSG00000116857.12391.09450565.77950-0.532703.693002.97090HepG2U2AF1
TMEM9ENSG00000116857.12700.86050573.028100.290402.330601.68160HepG2UPF1
TMEM9ENSG00000116857.12546.90680987.88140-0.8530011.793209.41310K562AARS
TMEM9ENSG00000116857.122190.891001618.878800.436408.285807.37630K562AGGF1
TMEM9ENSG00000116857.122322.827701684.532000.463405.162804.25810K562AKAP8L
TMEM9ENSG00000116857.12438.83220672.83870-0.616603.595502.35930K562CCAR1
TMEM9ENSG00000116857.121913.051501251.792700.611803.600702.36050K562CNOT7
TMEM9ENSG00000116857.12839.16980682.751200.297501.996901.32210K562CPSF6
TMEM9ENSG00000116857.121646.667901313.189600.326404.067202.58010K562DDX21
TMEM9ENSG00000116857.121095.938601504.70440-0.457305.156503.67300K562DDX3X
TMEM9ENSG00000116857.12906.565501339.12140-0.562807.412406.41550K562DDX47
TMEM9ENSG00000116857.12841.506601386.82960-0.7207014.2817012.84000K562EIF2S2
TMEM9ENSG00000116857.12265.62580684.37150-1.3654010.242308.28240K562EIF3A
TMEM9ENSG00000116857.12821.998001138.48270-0.469902.240301.31910K562EIF3D
TMEM9ENSG00000116857.12581.77210771.00640-0.406302.645501.86490K562EIF3G
TMEM9ENSG00000116857.121216.453001572.00650-0.369903.295802.40430K562EIF4A3
TMEM9ENSG00000116857.121074.11950757.318400.504104.727403.59650K562FIP1L1
TMEM9ENSG00000116857.12640.08990938.82040-0.552602.759601.63540K562FKBP4
TMEM9ENSG00000116857.12479.04140694.77840-0.536404.052703.01330K562FMR1
TMEM9ENSG00000116857.12958.368801634.81410-0.7705015.6054014.27650K562FXR1
TMEM9ENSG00000116857.121523.127801158.492900.394703.889702.16310K562G3BP1
TMEM9ENSG00000116857.12377.20750833.92330-1.1446011.078509.47480K562G3BP2
TMEM9ENSG00000116857.122387.591201847.978000.369503.772202.89390K562GRSF1
TMEM9ENSG00000116857.121728.533602140.66100-0.308503.507302.50230K562HNRNPU
TMEM9ENSG00000116857.121713.757201212.087200.499603.824602.54330K562IGF2BP2
TMEM9ENSG00000116857.122173.481501787.656000.281802.375101.61970K562KIF1C
TMEM9ENSG00000116857.12740.867401046.93810-0.498904.864502.94880K562LARP7
TMEM9ENSG00000116857.121040.778701273.46910-0.291102.324601.54950K562MAGOH
TMEM9ENSG00000116857.123157.117402455.372900.362602.594901.50340K562MSI2
TMEM9ENSG00000116857.121246.200501569.79510-0.333003.296401.94390K562NCBP2
TMEM9ENSG00000116857.121539.970801048.823700.554004.932303.06990K562NONO
TMEM9ENSG00000116857.121571.166801272.310400.304304.758603.81570K562NSUN2
TMEM9ENSG00000116857.121765.158101205.312500.550302.368001.46680K562PABPN1
TMEM9ENSG00000116857.121423.527601007.938300.498003.943701.73040K562PES1
TMEM9ENSG00000116857.121285.77530859.750500.580506.231504.91640K562PPIG
TMEM9ENSG00000116857.12616.084501035.03300-0.748506.932205.74430K562PRPF8
TMEM9ENSG00000116857.12605.658001237.28390-1.0306020.7459018.99800K562PTBP1
TMEM9ENSG00000116857.121990.104602513.39640-0.336802.468501.69970K562PUF60
TMEM9ENSG00000116857.122134.106302619.36050-0.295602.394801.50070K562PUM2
TMEM9ENSG00000116857.122286.249201670.484400.452605.058204.35250K562PUS1
TMEM9ENSG00000116857.122205.489701627.725800.438106.376905.50220K562RBM15
TMEM9ENSG00000116857.12877.153501248.33120-0.509104.639903.18330K562NELFE
TMEM9ENSG00000116857.12683.459201054.05680-0.625004.644003.58420K562RPS19
TMEM9ENSG00000116857.121712.380301058.016400.694502.932901.56490K562RRP9
TMEM9ENSG00000116857.12423.79570620.04730-0.549003.392602.31210K562SF3B1
TMEM9ENSG00000116857.122107.957701344.458400.648702.795201.48460K562SFPQ
TMEM9ENSG00000116857.121778.568501212.994200.552004.183003.32130K562SRSF1
TMEM9ENSG00000116857.121433.715301145.689100.323402.435601.45920K562SRSF5
TMEM9ENSG00000116857.121460.254501171.769000.317403.783502.40100K562SRSF7
TMEM9ENSG00000116857.12679.42680890.58010-0.390403.369302.46460K562SYNCRIP
TMEM9ENSG00000116857.121498.918501184.121400.340003.086702.21380K562TIA1
TMEM9ENSG00000116857.121211.88630931.743500.379102.543201.64910K562TIAL1
TMEM9ENSG00000116857.121478.673901162.196800.347302.790101.69250K562TRA2A
TMEM9ENSG00000116857.121523.143801154.343900.399904.082903.01150K562WDR3
TMEM9ENSG00000116857.122859.673302372.022300.269602.322501.54360K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TMEM9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TMEM9 is not avaliable on ENCORE database.