TMA16

General Information

Gene Name       : TMA16
Gene ID             : ENSG00000198498.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMA16)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMA16ENSG00000198498.938.2257.8248.02ENCSR000AEF
HepG2TMA16ENSG00000198498.925.9434.4930.22ENCSR985KAT
K562TMA16ENSG00000198498.953.6049.4251.51ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMA16 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMA16 RNA is bound by 15 proteins.  







eCLIP assay for TMA16 is not avaliable on ENCORE database.





15 proteins are bound to TMA16 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr4164438612164438679+3'-UTR,CDS,intron-Distal,intron-Proximal3.042984.63797K562PRPF8
chr4164438551164438612+3'-UTR,CDS,intron-Distal,intron-Proximal4.027314.98250K562AQR
chr4164440475164440530+3'-UTR,CDS,intron-Distal,intron-Proximal4.140725.51636K562GPKOW
chr4164440528164440593+3'-UTR,CDS,intron-Distal3.957784.93978HepG2BCLAF1
chr4164440725164440826+3'-UTR,intron-Distal3.202646.62024K562KHSRP
chr4164440472164440522+3'-UTR,CDS,intron-Distal,intron-Proximal4.4065211.54194K562U2AF2
chr4164438621164438704+3'-UTR,CDS,intron-Distal,intron-Proximal4.037417.53394K562AQR
chr4164440841164440938+3'-UTR,intron-Distal3.062053.66299HepG2KHSRP
chr4164440593164440683+3'-UTR,CDS,intron-Distal3.530347.01246HepG2BCLAF1
chr4164440471164440524+3'-UTR,CDS,intron-Distal,intron-Proximal3.830629.60060HepG2U2AF2
chr4164440464164440523+3'-UTR,CDS,intron-Distal,intron-Proximal3.539758.97396K562SF3B4
chr4164440473164440521+3'-UTR,CDS,intron-Distal,intron-Proximal4.740736.14481K562U2AF1
chr4164415831164415910+5'-UTR,intron-Distal4.207423.84644HepG2NCBP2
chr4164415863164415960+5'-UTR,CDS,intron-Distal,intron-Proximal4.5685915.95983K562DDX3X
chr4164428183164428255+CDS,intron-Proximal5.222447.01146K562DDX3X
chr4164436546164436606+CDS,intron-Distal3.063894.88483K562ZNF622
chr4164436550164436609+CDS,intron-Distal3.668133.14999HepG2GRWD1
chr4164436467164436538+CDS,intron-Distal3.304503.65452K562BUD13
chr4164428216164428311+CDS,intron-Proximal5.074497.31591K562UCHL5
chr4164428296164428353+CDS,intron-Proximal4.874885.69951K562AQR
chr4164433973164434015+CDS,intron-Proximal3.035854.09989K562UCHL5
chr4164428229164428298+CDS,intron-Proximal3.552355.53307K562ZNF622
chr4164420161164420221+intron-Distal4.560065.31925HepG2QKI
chr4164440423164440464+intron-Distal,intron-Proximal5.006434.90235K562SF3B4
chr4164427784164427897+intron-Distal4.903426.64929HepG2QKI
chr4164428326164428451+intron-Distal,intron-Proximal5.064386.48028K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMA16 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMA16 is not available on ENCORE database.

  • 87 RBPs can affect the levels of TMA16.  








The Knockdown/knockout RNA-Seq assay for TMA16 is not available on ENCORE database.





87 RBPs can affect the gene expression of TMA16 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMA16ENSG00000198498.5237.10790480.15390-1.0180014.4478013.29010HepG2ACO1
TMA16ENSG00000198498.5339.84500463.92660-0.449002.548001.59070HepG2ADAR
TMA16ENSG00000198498.5411.78710671.91430-0.706405.842504.72470HepG2ASCC1
TMA16ENSG00000198498.5655.41340898.84130-0.455703.216002.48520HepG2AUH
TMA16ENSG00000198498.5260.19290680.13250-1.3862020.7435019.33780HepG2BOP1
TMA16ENSG00000198498.5529.93460803.46230-0.600402.260801.38800HepG2CCAR1
TMA16ENSG00000198498.5437.35660638.36600-0.545603.722502.83530HepG2CIRBP
TMA16ENSG00000198498.5329.85170480.01660-0.541305.205604.34500HepG2CKAP4
TMA16ENSG00000198498.5356.45220624.38620-0.808707.708606.60900HepG2CPSF6
TMA16ENSG00000198498.5338.34620479.27810-0.502403.313102.57530HepG2DDX21
TMA16ENSG00000198498.5603.69490777.89180-0.365702.028601.48420HepG2DDX3X
TMA16ENSG00000198498.5302.87940544.22960-0.845505.122103.78080HepG2DDX5
TMA16ENSG00000198498.5364.22050668.24320-0.875607.480406.50950HepG2DDX6
TMA16ENSG00000198498.5305.18490487.44060-0.675504.581703.41820HepG2EEF2
TMA16ENSG00000198498.5339.15790642.38050-0.921508.768607.75260HepG2EIF2S1
TMA16ENSG00000198498.5409.22010709.89730-0.794706.658105.66470HepG2EIF4A3
TMA16ENSG00000198498.5474.31450691.20120-0.543302.882102.18100HepG2EIF4B
TMA16ENSG00000198498.5743.207801031.95530-0.473505.547704.74550HepG2ETF1
TMA16ENSG00000198498.5266.63190641.00300-1.2655012.7756011.30190HepG2FIP1L1
TMA16ENSG00000198498.5532.14950716.28280-0.428702.702502.01920HepG2FXR1
TMA16ENSG00000198498.5386.70970664.44360-0.780906.689905.67580HepG2G3BP1
TMA16ENSG00000198498.5365.41440513.62170-0.491202.404401.45920HepG2GNB2L1
TMA16ENSG00000198498.5404.99740707.75640-0.805307.037606.04860HepG2GPKOW
TMA16ENSG00000198498.5239.04360471.60690-0.980309.098708.02580HepG2HNRNPA1
TMA16ENSG00000198498.5335.90930524.59100-0.643104.789003.89500HepG2HNRNPC
TMA16ENSG00000198498.5414.95990602.08310-0.537005.060304.12710HepG2HNRNPF
TMA16ENSG00000198498.5434.62760675.42800-0.636005.035604.21190HepG2HNRNPLL
TMA16ENSG00000198498.5423.33290521.12160-0.299802.048001.51720HepG2HNRNPU
TMA16ENSG00000198498.5383.14830592.88650-0.629905.645504.65030HepG2IGF2BP1
TMA16ENSG00000198498.5412.12360675.38750-0.712606.051805.09070HepG2IGF2BP2
TMA16ENSG00000198498.5533.34730716.53300-0.426002.609301.97170HepG2MAGOH
TMA16ENSG00000198498.5462.02520720.53910-0.641104.581903.78770HepG2MATR3
TMA16ENSG00000198498.5374.54710688.92330-0.879206.122904.65090HepG2MTPAP
TMA16ENSG00000198498.5453.65410737.50830-0.701105.717004.82170HepG2NCBP2
TMA16ENSG00000198498.5165.57210295.76470-0.837003.803401.93030HepG2PA2G4
TMA16ENSG00000198498.5203.42680337.85540-0.731902.742201.85900HepG2PABPC1
TMA16ENSG00000198498.5199.63120355.24040-0.831505.370004.28220HepG2PRPF8
TMA16ENSG00000198498.5488.96010784.11370-0.681307.501806.58210HepG2PUF60
TMA16ENSG00000198498.5641.14930831.74870-0.375503.238502.51240HepG2PUM2
TMA16ENSG00000198498.5311.03800489.06300-0.652906.995406.09260HepG2PUS1
TMA16ENSG00000198498.5504.18620696.01290-0.465204.443803.78700HepG2NELFE
TMA16ENSG00000198498.5348.02400648.49310-0.897909.449408.31010HepG2RPLP0
TMA16ENSG00000198498.5533.24440651.13760-0.288202.005301.48890HepG2SF3B4
TMA16ENSG00000198498.5442.27440541.17180-0.291102.010901.44860HepG2SMN1
TMA16ENSG00000198498.5580.33900774.15150-0.415704.412403.65540HepG2SRSF5
TMA16ENSG00000198498.5356.61570591.50410-0.730007.833506.76060HepG2SRSF7
TMA16ENSG00000198498.5564.43470845.86710-0.583608.050807.26420HepG2SSB
TMA16ENSG00000198498.5243.88470458.46540-0.910606.610305.63450HepG2SUPV3L1
TMA16ENSG00000198498.5477.99080658.42350-0.462003.138902.37180HepG2TARDBP
TMA16ENSG00000198498.5242.73140506.30880-1.0607013.3761012.41620HepG2TIAL1
TMA16ENSG00000198498.5404.39490510.89730-0.337302.410701.87710HepG2TRIM56
TMA16ENSG00000198498.5421.95090548.39700-0.378102.049401.49990HepG2U2AF1
TMA16ENSG00000198498.5352.06020552.21170-0.649407.401506.35120HepG2UPF1
TMA16ENSG00000198498.5280.61510419.78150-0.581002.505201.55390HepG2UPF2
TMA16ENSG00000198498.5431.28480567.60460-0.396203.159602.04870HepG2UTP18
TMA16ENSG00000198498.5439.27260533.14040-0.279401.817001.30920HepG2UTP3
TMA16ENSG00000198498.5360.10470465.73880-0.371102.728802.06100HepG2ZC3H8
TMA16ENSG00000198498.5339.38880607.32870-0.8395013.3156012.34130HepG2ZNF622
TMA16ENSG00000198498.5912.695301173.37100-0.362502.860001.85740K562AKAP8
TMA16ENSG00000198498.5790.509701373.41730-0.796909.994108.98440K562AQR
TMA16ENSG00000198498.5604.03340840.81910-0.477205.643304.25490K562BCLAF1
TMA16ENSG00000198498.5434.97400924.45120-1.0877011.790109.95310K562BOP1
TMA16ENSG00000198498.5769.840401096.15570-0.509803.844202.09700K562CKAP4
TMA16ENSG00000198498.5955.303901457.18980-0.609203.393802.19390K562CNOT7
TMA16ENSG00000198498.5593.17680982.99300-0.728706.312405.12830K562CPSF6
TMA16ENSG00000198498.5504.74620637.88660-0.337702.307301.35880K562CSTF2
TMA16ENSG00000198498.5516.68320670.35080-0.375602.664101.64040K562DDX3X
TMA16ENSG00000198498.5435.89680637.79870-0.549103.978802.86810K562EFTUD2
TMA16ENSG00000198498.5584.79150736.31600-0.332402.875301.63730K562EIF2S1
TMA16ENSG00000198498.5717.55470965.99730-0.428904.687103.78200K562EIF2S2
TMA16ENSG00000198498.5507.40510682.95350-0.428602.289201.35890K562EIF3D
TMA16ENSG00000198498.5497.86620630.69970-0.341202.517601.43340K562EIF4B
TMA16ENSG00000198498.51376.511001696.11720-0.301203.397802.36050K562EIF4G2
TMA16ENSG00000198498.5626.73860887.90680-0.502504.332403.25550K562FIP1L1
TMA16ENSG00000198498.5551.864401000.10210-0.8578010.754009.01220K562FMR1
TMA16ENSG00000198498.5574.53240847.64640-0.561104.536603.33990K562FTO
TMA16ENSG00000198498.5607.53660938.54520-0.627506.604705.38180K562GPKOW
TMA16ENSG00000198498.5333.07190693.83110-1.058806.928306.02400K562HNRNPC
TMA16ENSG00000198498.51194.30160888.068100.427303.202501.86500K562HNRNPK
TMA16ENSG00000198498.5694.27570904.36070-0.381402.928401.69550K562IGF2BP3
TMA16ENSG00000198498.5408.16270801.32490-0.973208.642806.87720K562KRR1
TMA16ENSG00000198498.5906.240101128.76320-0.316802.470401.47340K562MAK16
TMA16ENSG00000198498.5717.89140932.58170-0.377503.146402.15990K562MATR3
TMA16ENSG00000198498.5612.05170916.11270-0.581905.579504.30960K562METAP2
TMA16ENSG00000198498.5497.52470699.34360-0.491204.289302.74310K562NCBP2
TMA16ENSG00000198498.5760.54820987.53450-0.376804.757303.81470K562NSUN2
TMA16ENSG00000198498.5375.44420669.11770-0.833707.411304.54660K562PA2G4
TMA16ENSG00000198498.51011.737301399.93140-0.468502.581101.40050K562PABPC1
TMA16ENSG00000198498.5567.641301166.80160-1.039506.188804.52880K562PABPN1
TMA16ENSG00000198498.5646.91330849.52390-0.393102.401401.62790K562PCBP3
TMA16ENSG00000198498.5515.63510651.60350-0.337602.235601.51510K562POLR2G
TMA16ENSG00000198498.51479.405201850.57200-0.323003.016702.16420K562PUF60
TMA16ENSG00000198498.51601.078701928.61080-0.268502.930101.94430K562PUM2
TMA16ENSG00000198498.51344.798801101.944000.287201.879101.41470K562PUS1
TMA16ENSG00000198498.5795.41820974.47890-0.292902.479201.70430K562SF3A3
TMA16ENSG00000198498.5577.31050892.48470-0.628505.043103.70780K562SF3B1
TMA16ENSG00000198498.5747.801301301.55980-0.799503.666702.07700K562SFPQ
TMA16ENSG00000198498.5794.47050998.37770-0.329603.573202.52570K562SRPK2
TMA16ENSG00000198498.5548.02190890.02910-0.699608.443907.21520K562SRSF1
TMA16ENSG00000198498.5425.06810598.33060-0.493202.370401.50940K562TIAL1
TMA16ENSG00000198498.5474.47690636.04980-0.422802.474101.51710K562UCHL5
TMA16ENSG00000198498.5564.952301047.10560-0.8902019.2439017.53950K562UPF1
TMA16ENSG00000198498.5559.99230895.97220-0.678008.232806.68040K562WDR3
TMA16ENSG00000198498.5744.967601248.78710-0.745303.251901.32160K562XPO5
TMA16ENSG00000198498.5454.31050647.61070-0.511403.470202.06240K562XRN2
TMA16ENSG00000198498.51233.506101547.15890-0.326902.661301.81750K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMA16 is not available on ENCORE database.





5 RBPs can affect the splicing of TMA16 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMA16ENSG00000198498.5chr4+1644400171644402361644385851644386281644404851644408710.089000.002550.04432includedK562SRSF1
SETMA16ENSG00000198498.5chr4+1644400171644402361644384061644386281644404851644416910.051000.007500.06467includedK562AQR
SETMA16ENSG00000198498.5chr4+1644400211644402361644385851644386281644404851644408710.069000.001110.01859includedK562PUS1
SETMA16ENSG00000198498.5chr4+1644364641644366131644352251644353101644385851644386280.068000.002650.07860includedK562HNRNPU
MXETMA16ENSG00000198498.5chr4+1644352251644353101644364641644366131644281841644282971644385851644386280.082000.006310.077641includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMA16 is not avaliable on ENCORE database.