TM9SF4

General Information

Gene Name : TM9SF4
Gene ID : ENSG00000101337.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TM9SF4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TM9SF4	ENSG00000101337.15	20.19	23.73	21.96	ENCSR000AEF
HepG2	TM9SF4	ENSG00000101337.15	85.88	81.49	83.69	ENCSR985KAT
K562	TM9SF4	ENSG00000101337.15	29.63	31.17	30.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TM9SF4 is not avaliable on ENCORE database.

Proteins bound to RNA

TM9SF4 RNA is bound by 44 proteins.

CanvasJS.com

eCLIP assay for TM9SF4 is not avaliable on ENCORE database.

44 proteins are bound to TM9SF4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	30753796	30753881	+	3'-UTR	6.23585	60.11493	HepG2	UPF1
chr20	30753343	30753423	+	3'-UTR	6.52838	52.65079	HepG2	UPF1
chr20	30754144	30754246	+	3'-UTR	5.11052	41.79234	HepG2	UPF1
chr20	30753881	30754004	+	3'-UTR	5.87225	40.65010	HepG2	UPF1
chr20	30753580	30753708	+	3'-UTR	5.91647	40.05244	HepG2	UPF1
chr20	30754246	30754359	+	3'-UTR	5.07819	37.08543	HepG2	UPF1
chr20	30753708	30753767	+	3'-UTR	5.41023	34.36041	HepG2	UPF1
chr20	30754593	30754668	+	3'-UTR	5.96768	31.05299	HepG2	UPF1
chr20	30754744	30754805	+	3'-UTR	5.30272	29.69811	HepG2	UPF1
chr20	30697908	30697980	+	intron-Distal,intron-Proximal	5.70912	29.60051	HepG2	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 189 entries

eCLIP assay for TM9SF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TM9SF4 is not available on ENCORE database.
75 RBPs can affect the levels of TM9SF4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TM9SF4 is not available on ENCORE database.

75 RBPs can affect the gene expression of TM9SF4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TM9SF4	ENSG00000101337.11	3896.59450	8609.02310	-1.14360	51.76590	49.72510	HepG2	QKI
TM9SF4	ENSG00000101337.11	2201.04620	5661.97920	-1.36310	51.96740	48.94140	HepG2	HNRNPM
TM9SF4	ENSG00000101337.11	4800.12880	8846.59700	-0.88200	45.55880	43.96980	HepG2	NELFE
TM9SF4	ENSG00000101337.11	4754.62120	7949.14460	-0.74150	32.11200	30.65840	HepG2	PTBP1
TM9SF4	ENSG00000101337.11	5623.95230	8638.38980	-0.61920	26.91540	25.77140	HepG2	SRSF1
TM9SF4	ENSG00000101337.11	3419.68380	8230.33250	-1.26710	25.37790	23.48950	HepG2	EIF4A3
TM9SF4	ENSG00000101337.11	3932.76230	5806.92710	-0.56220	21.25690	19.46480	HepG2	DDX19B
TM9SF4	ENSG00000101337.11	5548.39430	8276.00420	-0.57690	20.70120	19.33150	HepG2	SF3B4
TM9SF4	ENSG00000101337.11	1945.66290	5933.35430	-1.60860	20.97870	19.21380	HepG2	RAVER1
TM9SF4	ENSG00000101337.11	4932.97970	7781.85270	-0.65770	20.23530	19.09840	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TM9SF4 is not available on ENCORE database.

8 RBPs can affect the splicing of TM9SF4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30720815	30720929	30723876	30723976	30697308	30697558	30729299	30729468	0.18400	0.00000	0.00000	1included	HepG2	U2AF2
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30720815	30720929	30723876	30723976	30697308	30697558	30729299	30729468	0.16200	0.00016	0.02206	1included	K562	LARP4
SE	TM9SF4	ENSG00000101337.11	chr20	+	30742905	30742989			30738602	30738678	30745596	30745772	-0.13700	0.00028	0.00582	excluded	K562	PUS1
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30720815	30720929	30723876	30723976	30697308	30697558	30729299	30729468	0.11700	0.00029	0.00762	1included	HepG2	HNRNPUL1
SE	TM9SF4	ENSG00000101337.11	chr20	+	30724679	30724800			30723876	30723976	30729343	30729468	0.20800	0.00120	0.03644	included	K562	AKAP8L
SE	TM9SF4	ENSG00000101337.11	chr20	+	30732893	30733012			30730784	30730880	30734587	30734658	0.17400	0.00124	0.01688	included	HepG2	U2AF2
SE	TM9SF4	ENSG00000101337.11	chr20	+	30742905	30742989			30738602	30738678	30745596	30745772	-0.11700	0.00134	0.03415	excluded	K562	RBM15
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30720815	30720929	30723876	30723976	30697308	30697558	30729299	30729468	0.11800	0.00139	0.02281	1included	K562	DROSHA
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30720815	30720929	30723876	30723976	30697308	30697558	30729299	30729468	0.11600	0.00429	0.05827	1included	K562	HNRNPUL1
MXE	TM9SF4	ENSG00000101337.11	chr20	+	30742905	30742989	30745596	30745772	30738602	30738678	30746253	30746317	-0.10300	0.00666	0.09869	2included	HepG2	DDX55

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TM9SF4

General Information

Functions

Localization

Domains (AlphaFold: TM9SF4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TM9SF4 is not avaliable on ENCORE database.

44 proteins are bound to TM9SF4 RNA:

eCLIP assay for TM9SF4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TM9SF4 is not available on ENCORE database.

75 RBPs can affect the gene expression of TM9SF4 :

The Knockdown/knockout RNA-Seq assay for TM9SF4 is not available on ENCORE database.

8 RBPs can affect the splicing of TM9SF4 :

The Knockdown/knockout RNA-Seq assay for TM9SF4 is not avaliable on ENCORE database.