TJP1

General Information

Gene Name : TJP1
Gene ID : ENSG00000104067.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TJP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TJP1	ENSG00000104067.16	0.00	0.00	0.00	ENCSR000AEF
HepG2	TJP1	ENSG00000104067.16	18.91	24.35	21.63	ENCSR985KAT
K562	TJP1	ENSG00000104067.16	19.09	19.59	19.34	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TJP1 is not avaliable on ENCORE database.

Proteins bound to RNA

TJP1 RNA is bound by 37 proteins.

CanvasJS.com

eCLIP assay for TJP1 is not avaliable on ENCORE database.

37 proteins are bound to TJP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	29992814	29992874	-	3'-UTR,intron-Distal	4.24138	35.15612	K562	PUM2
chr15	30058476	30058671	-	CDS,intron-Distal,intron-Proximal	4.76448	33.39883	HepG2	BCLAF1
chr15	30058472	30058597	-	CDS,intron-Distal,intron-Proximal	5.45172	20.42960	K562	ZNF622
chr15	30058466	30058655	-	CDS,intron-Distal,intron-Proximal	4.05315	18.88686	K562	UCHL5
chr15	30114204	30114317	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.21402	17.05174	K562	FXR2
chr15	30099311	30099403	-	intron-Distal	5.89595	14.05565	K562	QKI
chr15	30114204	30114318	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.97811	13.15005	K562	FMR1
chr15	30058486	30058633	-	CDS,intron-Distal,intron-Proximal	4.06186	12.69146	HepG2	FXR2
chr15	30017217	30017331	-	intron-Distal	5.56902	12.42181	HepG2	QKI
chr15	30010885	30010964	-	CDS,intron-Distal	4.62322	12.38910	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 131 entries

eCLIP assay for TJP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TJP1 is not available on ENCORE database.
80 RBPs can affect the levels of TJP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TJP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of TJP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TJP1	ENSG00000104067.12	2396.57670	1435.39760	0.73940	22.40160	21.33390	HepG2	SRSF1
TJP1	ENSG00000104067.12	1502.53620	2316.14390	-0.62430	16.82420	15.78320	HepG2	SSB
TJP1	ENSG00000104067.12	1061.68970	1640.56170	-0.62780	15.88420	14.38490	HepG2	HNRNPL
TJP1	ENSG00000104067.12	2536.53480	1809.80210	0.48690	14.11310	12.99100	HepG2	PUM1
TJP1	ENSG00000104067.12	1975.00550	2906.08220	-0.55720	13.67350	12.51470	K562	AGGF1
TJP1	ENSG00000104067.12	2142.66070	1298.28870	0.72270	12.83610	11.44450	HepG2	RBM25
TJP1	ENSG00000104067.12	705.43870	1323.09260	-0.90730	11.29530	9.84940	HepG2	XRN2
TJP1	ENSG00000104067.12	2120.97350	1470.00920	0.52880	10.64660	9.71320	HepG2	NELFE
TJP1	ENSG00000104067.12	4029.88410	2220.11540	0.86000	10.26810	9.04110	HepG2	U2AF1
TJP1	ENSG00000104067.12	1936.75460	1375.15090	0.49400	9.45790	8.46480	HepG2	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TJP1 is not available on ENCORE database.

36 RBPs can affect the splicing of TJP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	-0.27100	0.00000	excluded	HepG2	HNRNPM
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.29700	0.00000	included	HepG2	DDX59
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.31300	0.00105	included	HepG2	TBRG4
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	-0.45400	0.00000	excluded	HepG2	U2AF2
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.36400	0.00000	included	HepG2	SUGP2
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.51200	0.00012	included	HepG2	BCLAF1
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	-0.46400	0.00000	excluded	HepG2	SFPQ
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.23600	0.00003	included	HepG2	FTO
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.49100	0.00000	included	K562	HNRNPL
SE	TJP1	ENSG00000104067.12	chr15	-	30011980	30012220	30010469	30011342	30012561	30012912	0.48800	0.00000	included	HepG2	TIAL1

Showing 1 to 10 of 47 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TJP1

General Information

Functions

Localization

Domains (AlphaFold: TJP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TJP1 is not avaliable on ENCORE database.

37 proteins are bound to TJP1 RNA:

eCLIP assay for TJP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TJP1 is not available on ENCORE database.

80 RBPs can affect the gene expression of TJP1 :

The Knockdown/knockout RNA-Seq assay for TJP1 is not available on ENCORE database.

36 RBPs can affect the splicing of TJP1 :

The Knockdown/knockout RNA-Seq assay for TJP1 is not avaliable on ENCORE database.