STXBP4

General Information

Gene Name       : STXBP4
Gene ID             : ENSG00000166263.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: STXBP4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878STXBP4ENSG00000166263.139.186.687.93ENCSR000AEF
HepG2STXBP4ENSG00000166263.133.1510.806.98ENCSR985KAT
K562STXBP4ENSG00000166263.1316.0913.0914.59ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for STXBP4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • STXBP4 RNA is bound by 13 proteins.  







eCLIP assay for STXBP4 is not avaliable on ENCORE database.





13 proteins are bound to STXBP4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr175323811553238202+3'-UTR4.9590015.40627HepG2PCBP2
chr175306818953068312+5'-UTR,CDS,intron-Distal5.176485.73530K562DDX24
chr175306350153063593+5'-UTR,CDS,intron-Proximal3.461987.89598HepG2GRWD1
chr175304613353046216+5'-UTR,intron-Proximal4.107707.08947HepG2PRPF8
chr175306818353068209+5'-UTR,CDS,intron-Distal,intron-Proximal4.431557.49468HepG2BCLAF1
chr175307670453076804+5'-UTR,CDS,intron-Proximal4.471028.41475HepG2BCLAF1
chr175306820953068274+5'-UTR,CDS,intron-Distal3.962069.74534HepG2BCLAF1
chr175306827453068325+5'-UTR,CDS,intron-Distal,intron-Proximal4.085339.09836HepG2BCLAF1
chr175306818553068273+5'-UTR,CDS,intron-Distal,intron-Proximal3.789115.47804K562ZNF622
chr175306359353063629+5'-UTR,CDS,intron-Proximal4.277704.69889HepG2GRWD1
chr175306818453068281+5'-UTR,CDS,intron-Distal,intron-Proximal5.117578.32768HepG2GRWD1
chr175306359353063629+5'-UTR,CDS,intron-Proximal4.171883.20027K562ZNF622
chr175306350353063633+5'-UTR,CDS,intron-Proximal3.054774.86366HepG2EIF3D
chr175307819453078243+CDS4.730924.78529HepG2BCLAF1
chr175307816753078243+CDS,intron-Proximal3.922563.31827HepG2GRWD1
chr175315028953150355+CDS4.263475.18972HepG2GRWD1
chr175315035553150425+CDS3.372794.02291HepG2GRWD1
chr175315026453150428+CDS3.4985910.76374HepG2BCLAF1
chr175307699253077042+CDS,intron-Proximal4.580344.70478HepG2BCLAF1
chr175310854253108581+CDS4.337623.02457HepG2BCLAF1
chr175310858253108661+CDS,intron-Proximal4.996515.35117HepG2PRPF8
chr175308486953084946+CDS,intron-Distal3.438445.45876HepG2BCLAF1
chr175312443853124515+CDS,intron-Distal,intron-Proximal3.514444.56058HepG2BCLAF1
chr175307204653072102+intron-Distal3.863553.16986HepG2QKI
chr175316665953166817+intron-Distal4.667717.47576K562KHSRP
chr175307499153075042+intron-Distal3.688104.83406HepG2QKI
chr175308609353086133+intron-Distal4.942145.07478HepG2U2AF2
chr175315271353152801+intron-Distal3.931033.25538K562KHSRP
chr175305639353056463+intron-Distal4.849766.58335HepG2QKI
chr175309454753094647+intron-Distal4.1622312.86206HepG2PTBP1
chr175316494553165013+intron-Distal4.754574.66899HepG2HNRNPM
chr175310705753107122+intron-Distal4.008313.16986HepG2QKI
chr175307581053075909+intron-Distal3.572443.84494HepG2QKI
chr175307165153071765+intron-Distal4.164683.48210HepG2HNRNPL
chr175310766453107780+intron-Distal3.623393.89405HepG2PTBP1
chr175311338653113475+intron-Distal4.290014.26925HepG2KHSRP
chr175309454753094648+intron-Distal5.1304110.02898K562PTBP1
chr175316447353164522+intron-Distal4.508645.02084HepG2HNRNPM
chr175308783153088062+intron-Distal4.619366.13339K562KHSRP
chr175307479153074854+intron-Distal4.660885.31925HepG2QKI
chr175316505653165096+intron-Distal4.458654.64592HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for STXBP4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for STXBP4 is not available on ENCORE database.

  • 88 RBPs can affect the levels of STXBP4.  








The Knockdown/knockout RNA-Seq assay for STXBP4 is not available on ENCORE database.





88 RBPs can affect the gene expression of STXBP4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
STXBP4ENSG00000166263.9751.25470567.834300.403702.663801.68410HepG2ADAR
STXBP4ENSG00000166263.91473.68960877.306700.7482013.2435011.93940HepG2AUH
STXBP4ENSG00000166263.9300.00910577.58910-0.945007.749906.13990HepG2BCCIP
STXBP4ENSG00000166263.9908.24020640.567500.503604.379403.64610HepG2BOP1
STXBP4ENSG00000166263.91295.48360573.767701.1749026.4884024.59130HepG2CALR
STXBP4ENSG00000166263.9438.99210741.25740-0.7558012.7150011.49950HepG2CKAP4
STXBP4ENSG00000166263.9956.43860532.098400.845905.887804.77130HepG2CNOT7
STXBP4ENSG00000166263.9269.77350504.91720-0.904305.615904.68460HepG2DDX21
STXBP4ENSG00000166263.9328.94290531.35210-0.691803.812802.33160HepG2DDX27
STXBP4ENSG00000166263.91168.99620667.809100.807705.066703.75480HepG2DDX59
STXBP4ENSG00000166263.91000.80390726.752100.461503.725002.55930HepG2DDX5
STXBP4ENSG00000166263.9462.53080709.32660-0.616907.439506.42960HepG2DKC1
STXBP4ENSG00000166263.9438.62570566.74190-0.369703.263602.56570HepG2DNAJC2
STXBP4ENSG00000166263.9843.651901007.28090-0.255701.985901.45810HepG2ETF1
STXBP4ENSG00000166263.9476.68490804.01790-0.754205.735404.66630HepG2FIP1L1
STXBP4ENSG00000166263.9215.29370387.05660-0.846206.661505.47240HepG2FUBP3
STXBP4ENSG00000166263.9507.82490784.07540-0.626705.148504.22560HepG2FXR1
STXBP4ENSG00000166263.9292.18760577.25240-0.9823010.520109.38250HepG2HNRNPA1
STXBP4ENSG00000166263.9289.38530460.88810-0.671403.956502.13610HepG2HNRNPD
STXBP4ENSG00000166263.9575.89160736.39890-0.354702.065301.45600HepG2HNRNPK
STXBP4ENSG00000166263.9338.30020637.84650-0.9149014.7505013.44180HepG2HNRNPU
STXBP4ENSG00000166263.9473.90230651.53810-0.459305.535104.52870HepG2ILF2
STXBP4ENSG00000166263.9422.31330743.69600-0.816406.209504.64830HepG2KHSRP
STXBP4ENSG00000166263.9355.20430552.81190-0.638104.703403.10640HepG2LIN28B
STXBP4ENSG00000166263.9616.55090784.34850-0.347301.895701.34740HepG2MAGOH
STXBP4ENSG00000166263.9337.04170650.94710-0.9496010.837409.34760HepG2MSI2
STXBP4ENSG00000166263.9578.90390807.36220-0.479903.081202.41500HepG2NCBP2
STXBP4ENSG00000166263.9284.70210709.21090-1.3168024.0883022.01120HepG2NOL12
STXBP4ENSG00000166263.9434.46870564.10040-0.376702.090501.43630HepG2NSUN2
STXBP4ENSG00000166263.9272.71590486.27660-0.834404.504003.35340HepG2PABPC1
STXBP4ENSG00000166263.9355.94170719.09940-1.0146011.155709.73250HepG2PABPC4
STXBP4ENSG00000166263.9513.35220631.35200-0.298502.127301.37680HepG2PARN
STXBP4ENSG00000166263.9519.68790721.68960-0.473704.889704.11860HepG2PCBP1
STXBP4ENSG00000166263.9454.62220636.26940-0.485002.376201.41080HepG2PCBP2
STXBP4ENSG00000166263.9190.66180298.57610-0.647103.220401.89280HepG2PKM
STXBP4ENSG00000166263.9300.16940568.90710-0.9224012.4825010.98420HepG2PPIL4
STXBP4ENSG00000166263.9358.85390558.05910-0.637006.921705.76190HepG2PRPF4
STXBP4ENSG00000166263.9879.40840677.018500.377202.952402.34020HepG2PUF60
STXBP4ENSG00000166263.9937.17570718.702100.382805.102404.34670HepG2PUM1
STXBP4ENSG00000166263.9564.07190718.16650-0.348402.384101.76100HepG2PUM2
STXBP4ENSG00000166263.9408.61420755.17030-0.8861016.2013014.93050HepG2PUS1
STXBP4ENSG00000166263.91129.54670841.897200.423904.565203.94330HepG2RBM22
STXBP4ENSG00000166263.9441.74240634.72500-0.522903.219802.14560HepG2RBM27
STXBP4ENSG00000166263.9322.93830513.85310-0.670103.892302.07920HepG2RBM47
STXBP4ENSG00000166263.9323.74770515.42340-0.670903.801802.55330HepG2RCC2
STXBP4ENSG00000166263.9939.68910603.136200.639603.993002.85990HepG2RPS10
STXBP4ENSG00000166263.9421.80870568.02730-0.429403.858503.11930HepG2SAFB2
STXBP4ENSG00000166263.9743.251401007.89880-0.439402.124701.53260HepG2SF3A3
STXBP4ENSG00000166263.9370.25930629.72540-0.766207.055605.97240HepG2SF3B1
STXBP4ENSG00000166263.9372.56180625.99340-0.748705.274603.92610HepG2SMNDC1
STXBP4ENSG00000166263.9490.13780700.67590-0.515602.384501.66090HepG2SNRNP70
STXBP4ENSG00000166263.9928.92600798.021400.219001.740601.34100HepG2SRSF1
STXBP4ENSG00000166263.9856.43330649.261200.399404.657603.97610HepG2SRSF9
STXBP4ENSG00000166263.9933.40470760.225700.296003.024802.37990HepG2SUCLG1
STXBP4ENSG00000166263.9456.96440619.76660-0.439603.462402.91620HepG2TIAL1
STXBP4ENSG00000166263.9299.85270625.32880-1.0604018.5505017.25970HepG2TRIM56
STXBP4ENSG00000166263.9465.48480687.91460-0.563504.016103.26540HepG2U2AF1
STXBP4ENSG00000166263.9941.01620700.148900.426502.500801.70730HepG2UBE2L3
STXBP4ENSG00000166263.9175.89220333.95200-0.924906.742905.54590HepG2UCHL5
STXBP4ENSG00000166263.9249.14200517.65420-1.055007.227505.55550HepG2UPF2
STXBP4ENSG00000166263.9658.65760862.97800-0.389804.050803.34600HepG2UTP3
STXBP4ENSG00000166263.9281.90330556.50010-0.981208.968807.68140HepG2XRN2
STXBP4ENSG00000166263.9769.59420550.717400.482705.954705.02840HepG2ZC3H8
STXBP4ENSG00000166263.9346.33640495.10370-0.515603.201001.86940K562ABCF1
STXBP4ENSG00000166263.9273.97690372.55640-0.443401.971601.47700K562AGGF1
STXBP4ENSG00000166263.9273.01590409.36430-0.584404.006202.77650K562AKAP8
STXBP4ENSG00000166263.9299.13600387.65720-0.374001.851001.31190K562AKAP8L
STXBP4ENSG00000166263.9206.89680461.53790-1.1575010.540509.50570K562AQR
STXBP4ENSG00000166263.9179.81540292.66660-0.702702.215001.35360K562BCLAF1
STXBP4ENSG00000166263.9133.48600226.13980-0.760503.634802.63570K562BOP1
STXBP4ENSG00000166263.9301.28160429.64380-0.512003.783202.48220K562CPEB4
STXBP4ENSG00000166263.9247.29220330.29960-0.417602.284501.62150K562EIF2S2
STXBP4ENSG00000166263.9138.46100219.07230-0.661903.687802.32060K562EIF4B
STXBP4ENSG00000166263.9410.11600595.91280-0.539104.274603.11460K562EIF4G2
STXBP4ENSG00000166263.9147.28890229.56960-0.640303.024502.19540K562GPKOW
STXBP4ENSG00000166263.9282.96850440.17440-0.637404.465603.50950K562GRSF1
STXBP4ENSG00000166263.9311.02250482.54220-0.633604.498803.49000K562HSPD1
STXBP4ENSG00000166263.9206.20990317.07960-0.620702.930501.86580K562IGF2BP2
STXBP4ENSG00000166263.9306.36040411.41740-0.425402.557901.76870K562KIF1C
STXBP4ENSG00000166263.9148.71370224.08600-0.591502.532001.69780K562METAP2
STXBP4ENSG00000166263.9438.54380635.21510-0.534503.468202.20250K562MSI2
STXBP4ENSG00000166263.9225.36770325.79050-0.531703.338902.45370K562MTPAP
STXBP4ENSG00000166263.9248.81020361.96530-0.540803.957203.08430K562NSUN2
STXBP4ENSG00000166263.9281.22250404.08150-0.522903.031902.16790K562PPIG
STXBP4ENSG00000166263.9461.77260677.63990-0.553303.561602.47360K562PUM2
STXBP4ENSG00000166263.9231.45330310.53320-0.424002.048701.33060K562RBM22
STXBP4ENSG00000166263.9215.65790357.19290-0.728005.951904.79250K562SF3A3
STXBP4ENSG00000166263.9164.05830297.60620-0.859206.722305.35130K562SF3B4
STXBP4ENSG00000166263.9209.38390299.78200-0.517802.685501.65530K562SRSF5
STXBP4ENSG00000166263.9304.37630200.783300.600102.077201.36520K562SYNCRIP
STXBP4ENSG00000166263.9159.13150321.28500-1.013608.068106.78180K562TARDBP
STXBP4ENSG00000166263.9208.85390309.91180-0.569403.212902.32180K562TIA1
STXBP4ENSG00000166263.9254.02810383.80080-0.595404.500003.60700K562UPF1
STXBP4ENSG00000166263.9222.80640390.05820-0.807905.615303.91330K562UTP3
STXBP4ENSG00000166263.9231.95270341.51740-0.558104.099303.08410K562WDR43
STXBP4ENSG00000166263.9337.52120519.93080-0.623305.105403.87480K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for STXBP4 is not available on ENCORE database.





5 RBPs can affect the splicing of STXBP4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESTXBP4ENSG00000166263.9chr17+5312097253121031531205965312068653124449531245150.142000.000570.06863includedHepG2HNRNPUL1
SESTXBP4ENSG00000166263.9chr17+5320754453207643531584105315854453218670532187280.099000.004390.09561includedHepG2SF3A3
SESTXBP4ENSG00000166263.9chr17+5310998153110096531081675310862553111528531116200.140000.004750.08763includedK562RBM15
A3SSSTXBP4ENSG00000166263.9chr17+5307697253077203530769925307720353076705530768120.068000.018190.08792longerK562AQR
MXESTXBP4ENSG00000166263.9chr17+5312444953124515531502605315043753120596531206865315543853155555-0.211000.000320.024792includedHepG2LARP4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for STXBP4 is not avaliable on ENCORE database.