SIRT7

General Information

Gene Name : SIRT7
Gene ID : ENSG00000187531.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SIRT7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SIRT7	ENSG00000187531.13	4.01	11.87	7.94	ENCSR000AEF
HepG2	SIRT7	ENSG00000187531.13	28.51	13.49	21.00	ENCSR985KAT
K562	SIRT7	ENSG00000187531.13	18.54	13.63	16.09	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SIRT7 is not avaliable on ENCORE database.

Proteins bound to RNA

SIRT7 RNA is bound by 43 proteins.

CanvasJS.com

eCLIP assay for SIRT7 is not avaliable on ENCORE database.

43 proteins are bound to SIRT7 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	79879129	79879198	-	3'-UTR,5'-UTR,intron-Distal	4.10771	400.00000	K562	UPF1
chr17	79876165	79876223	-	3'-UTR,intron-Distal,intron-Proximal	6.08889	55.28591	K562	PUM2
chr17	79876223	79876268	-	3'-UTR,intron-Distal	4.86427	42.43655	K562	PUM2
chr17	79876097	79876145	-	intron-Distal,intron-Proximal	6.13347	24.79030	K562	FMR1
chr17	79877524	79877603	-	3'-UTR,intron-Distal	3.52511	21.90399	K562	UPF1
chr17	79879126	79879213	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.32369	21.08087	HepG2	HNRNPM
chr17	79876290	79876389	-	3'-UTR,intron-Distal	4.66480	20.42065	K562	UPF1
chr17	79871651	79871711	-	CDS,intron-Distal	5.50685	20.19795	HepG2	PPIG
chr17	79876042	79876097	-	5'-UTR,intron-Distal,intron-Proximal	5.28719	20.08715	K562	FMR1
chr17	79878199	79878246	-	3'-UTR,intron-Distal	4.47847	20.07258	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 153 entries

eCLIP assay for SIRT7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SIRT7 is not available on ENCORE database.
98 RBPs can affect the levels of SIRT7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SIRT7 is not available on ENCORE database.

98 RBPs can affect the gene expression of SIRT7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SIRT7	ENSG00000187531.9	984.21600	390.84680	1.33230	41.70820	40.23790	HepG2	ZNF622
SIRT7	ENSG00000187531.9	1812.82980	400.71940	2.17750	30.80530	28.52420	HepG2	SF3A3
SIRT7	ENSG00000187531.9	648.60310	255.63850	1.34310	22.96360	21.78470	HepG2	TIAL1
SIRT7	ENSG00000187531.9	869.88870	444.09820	0.96990	21.63380	20.16770	HepG2	CKAP4
SIRT7	ENSG00000187531.9	1888.98810	940.00870	1.00680	18.10040	16.76530	K562	AQR
SIRT7	ENSG00000187531.9	720.20300	282.27790	1.35120	18.16780	16.61490	HepG2	IGF2BP2
SIRT7	ENSG00000187531.9	765.23890	308.33960	1.31130	16.63320	15.16620	HepG2	NCBP2
SIRT7	ENSG00000187531.9	521.53740	194.72550	1.42120	16.92150	15.07780	HepG2	UCHL5
SIRT7	ENSG00000187531.9	1159.52010	683.93670	0.76150	15.35720	14.42870	HepG2	SRFBP1
SIRT7	ENSG00000187531.9	548.40450	273.20820	1.00510	15.73260	14.39290	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SIRT7 is not available on ENCORE database.

15 RBPs can affect the splicing of SIRT7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	SIRT7	ENSG00000187531.9	chr17	-	79873486	79873608	79873486	79873557	79875490	79875595	0.29000	0.00000	0.00005	longer	K562	AQR
RI	SIRT7	ENSG00000187531.9	chr17	-	79872169	79872578	79872169	79872406	79872479	79872578	0.26800	0.00000	0.00002	included	K562	AQR
A3SS	SIRT7	ENSG00000187531.9	chr17	-	79871649	79871799	79871649	79871756	79871962	79872089	0.09300	0.00002	0.00022	longer	K562	AQR
SE	SIRT7	ENSG00000187531.9	chr17	-	79871082	79871169	79869814	79870490	79871649	79871756	0.27400	0.00007	0.00468	included	K562	PTBP1
A3SS	SIRT7	ENSG00000187531.9	chr17	-	79872489	79872661	79872489	79872578	79873315	79873388	0.18700	0.00014	0.00118	longer	K562	AQR
RI	SIRT7	ENSG00000187531.9	chr17	-	79872169	79872578	79872169	79872406	79872479	79872578	0.17500	0.00017	0.00238	included	K562	AKAP8L
RI	SIRT7	ENSG00000187531.9	chr17	-	79871649	79872043	79871649	79871756	79871962	79872043	0.09800	0.00017	0.00135	included	K562	AQR
RI	SIRT7	ENSG00000187531.9	chr17	-	79872169	79872578	79872169	79872406	79872479	79872578	0.22200	0.00057	0.00584	included	HepG2	SF3B4
RI	SIRT7	ENSG00000187531.9	chr17	-	79871649	79872043	79871649	79871756	79871962	79872043	0.14300	0.00061	0.00838	included	K562	EFTUD2
RI	SIRT7	ENSG00000187531.9	chr17	-	79871649	79872043	79871649	79871756	79871962	79872043	0.20500	0.00119	0.06950	included	K562	SAFB

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SIRT7

General Information

Functions

Localization

Domains (AlphaFold: SIRT7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SIRT7 is not avaliable on ENCORE database.

43 proteins are bound to SIRT7 RNA:

eCLIP assay for SIRT7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SIRT7 is not available on ENCORE database.

98 RBPs can affect the gene expression of SIRT7 :

The Knockdown/knockout RNA-Seq assay for SIRT7 is not available on ENCORE database.

15 RBPs can affect the splicing of SIRT7 :

The Knockdown/knockout RNA-Seq assay for SIRT7 is not avaliable on ENCORE database.