SEC24D

General Information

Gene Name : SEC24D
Gene ID : ENSG00000150961.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEC24D)

Not Available

Antibody Validation

Cell Signaling Technology: 14687S

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEC24D	ENSG00000150961.14	29.54	26.57	28.05	ENCSR000AEF
HepG2	SEC24D	ENSG00000150961.14	29.82	34.99	32.41	ENCSR985KAT
K562	SEC24D	ENSG00000150961.14	12.17	13.19	12.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SEC24D		14687S	1			Submitted, ENCORE2	BGHcLV43-49, Submitted, ENCORE2	BGKcLV42-83, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
SEC24D	K562	CRISPR			SEC24D-BGKcLV42-83,SEC24D-BGKcLV42-84	NT-BGKcLV42-1,NT-BGKcLV42-2	73.9,81.6	Submitting	ENCORE2
SEC24D	HepG2	CRISPR			SEC24D-BGHcLV43-49,SEC24D-BGHcLV43-50	NT-BGHcLV43-1,NT-BGHcLV43-2	63.8,64.9	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SEC24D	Product_ID: 14687S Lot_ID: 1 Source: Cell Signaling Technology Target Name: SEC24D-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEC24D is not avaliable on ENCORE database.

Proteins bound to RNA

SEC24D RNA is bound by 30 proteins.

CanvasJS.com

eCLIP assay for SEC24D is not avaliable on ENCORE database.

30 proteins are bound to SEC24D RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	119734341	119734375	-	intron-Distal	7.82200	43.01636	HepG2	XPO5
chr4	119697208	119697303	-	intron-Distal	5.37980	30.10785	HepG2	PCBP2
chr4	119731146	119731239	-	intron-Distal	4.73486	22.34024	K562	AGGF1
chr4	119734277	119734341	-	intron-Distal	6.14879	20.00721	HepG2	XPO5
chr4	119738419	119738477	-	5'-UTR,CDS,intron-Distal	6.59819	17.57851	HepG2	IGF2BP1
chr4	119734375	119734418	-	intron-Distal	6.49456	16.41446	HepG2	XPO5
chr4	119738418	119738501	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.18979	13.39138	K562	IGF2BP1
chr4	119644021	119644115	-	3'-UTR,intron-Distal,intron-Proximal	5.13433	11.30105	HepG2	FUBP3
chr4	119720243	119720384	-	intron-Distal	4.45031	10.93465	K562	HNRNPL
chr4	119736560	119736597	-	intron-Distal,intron-Proximal	5.99660	10.48996	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for SEC24D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEC24D is not available on ENCORE database.
131 RBPs can affect the levels of SEC24D.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEC24D is not available on ENCORE database.

131 RBPs can affect the gene expression of SEC24D :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEC24D	ENSG00000150961.10	744.97860	2836.50330	-1.92880	122.69810	119.83610	HepG2	ETF1
SEC24D	ENSG00000150961.10	614.54260	2267.54110	-1.88350	62.88190	60.68710	HepG2	RPLP0
SEC24D	ENSG00000150961.10	967.41470	2370.76340	-1.29310	48.70000	47.04380	HepG2	RBM22
SEC24D	ENSG00000150961.10	833.17110	2678.42980	-1.68470	49.04400	46.68200	K562	FXR1
SEC24D	ENSG00000150961.10	825.93780	2241.34800	-1.44030	38.25850	36.49830	HepG2	BOP1
SEC24D	ENSG00000150961.10	443.95010	1397.80030	-1.65470	37.68150	34.73810	HepG2	ADAR
SEC24D	ENSG00000150961.10	3622.07760	2076.17930	0.80280	31.92680	29.80240	K562	UPF1
SEC24D	ENSG00000150961.10	858.79680	2332.42180	-1.44140	29.23810	27.41990	HepG2	GPKOW
SEC24D	ENSG00000150961.10	425.01580	1066.52440	-1.32730	27.85370	26.24050	HepG2	RPS19
SEC24D	ENSG00000150961.10	943.00750	1670.01760	-0.82450	26.05100	24.14080	HepG2	DDX19B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 160 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEC24D is not available on ENCORE database.

6 RBPs can affect the splicing of SEC24D :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SEC24D	ENSG00000150961.10	chr4	-	119687683	119687978	119685956	119686072	119689327	119689466	0.19700	0.00000	0.00000	included	HepG2	HNRNPK
SE	SEC24D	ENSG00000150961.10	chr4	-	119656881	119657724	119653887	119654067	119659415	119659625	0.05100	0.00000	0.00006	included	K562	AQR
SE	SEC24D	ENSG00000150961.10	chr4	-	119687683	119687978	119685956	119686072	119689327	119689466	0.15200	0.00000	0.00000	included	K562	HNRNPK
A3SS	SEC24D	ENSG00000150961.10	chr4	-	119736182	119736313	119736182	119736310	119736605	119736703	-0.21600	0.00000	0.00396	shorter	K562	PPIL4
A3SS	SEC24D	ENSG00000150961.10	chr4	-	119662095	119662265	119662095	119662192	119665142	119665313	0.05100	0.00001	0.00013	longer	K562	AQR
SE	SEC24D	ENSG00000150961.10	chr4	-	119687683	119687978	119685956	119686072	119689327	119689466	0.07500	0.00005	0.00608	included	HepG2	HNRNPL
SE	SEC24D	ENSG00000150961.10	chr4	-	119687683	119687978	119685956	119686072	119689327	119689466	0.06200	0.00019	0.00304	included	K562	AQR
SE	SEC24D	ENSG00000150961.10	chr4	-	119687683	119687978	119685956	119686072	119689327	119689466	0.06400	0.00020	0.00543	included	K562	SF3B4
SE	SEC24D	ENSG00000150961.10	chr4	-	119660303	119660442	119659415	119659534	119661817	119661963	-0.06400	0.00034	0.00487	excluded	K562	AQR
SE	SEC24D	ENSG00000150961.10	chr4	-	119657522	119657724	119653887	119654067	119659415	119659534	0.05700	0.00036	0.03853	included	HepG2	PRPF8

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEC24D

General Information

Functions

Localization

Domains (AlphaFold: SEC24D)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEC24D is not avaliable on ENCORE database.

30 proteins are bound to SEC24D RNA:

eCLIP assay for SEC24D is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEC24D is not available on ENCORE database.

131 RBPs can affect the gene expression of SEC24D :

The Knockdown/knockout RNA-Seq assay for SEC24D is not available on ENCORE database.

6 RBPs can affect the splicing of SEC24D :

The Knockdown/knockout RNA-Seq assay for SEC24D is not avaliable on ENCORE database.