RPF2

General Information

Gene Name : RPF2
Gene ID : ENSG00000197498.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPF2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPF2	ENSG00000197498.12	52.41	45.84	49.12	ENCSR000AEF
HepG2	RPF2	ENSG00000197498.12	18.74	47.52	33.13	ENCSR985KAT
K562	RPF2	ENSG00000197498.12	82.88	103.18	93.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPF2 is not avaliable on ENCORE database.

Proteins bound to RNA

RPF2 RNA is bound by 11 proteins.

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eCLIP assay for RPF2 is not avaliable on ENCORE database.

11 proteins are bound to RPF2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	111346632	111346757	+	3'-UTR,CDS	3.01981	21.72198	K562	ZNF800
chr6	111346605	111346767	+	3'-UTR,CDS,intron-Proximal	3.33910	20.53629	K562	UCHL5
chr6	111346621	111346699	+	3'-UTR,CDS	3.71311	15.84930	K562	ZNF622
chr6	111346634	111346741	+	3'-UTR,CDS	5.18506	15.16835	HepG2	BCLAF1
chr6	111346699	111346755	+	3'-UTR,CDS	4.61898	13.05811	K562	ZNF622
chr6	111345407	111345490	+	3'-UTR,CDS	3.22208	11.67184	K562	UCHL5
chr6	111303250	111303333	+	5'-UTR,CDS,intron-Proximal	3.59515	10.49508	K562	DDX3X
chr6	111306206	111306259	+	5'-UTR,CDS,intron-Proximal	4.19492	9.27494	K562	DDX3X
chr6	111345417	111345503	+	3'-UTR,CDS	3.64790	8.51822	K562	GRWD1
chr6	111346705	111346765	+	3'-UTR,CDS	5.00713	8.32833	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 28 entries

eCLIP assay for RPF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPF2 is not available on ENCORE database.
120 RBPs can affect the levels of RPF2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.

120 RBPs can affect the gene expression of RPF2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPF2	ENSG00000197498.8	3610.81870	2281.88870	0.66200	24.00430	21.88840	K562	WDR43
RPF2	ENSG00000197498.8	709.52880	1696.12970	-1.25730	20.82150	19.24080	HepG2	GPKOW
RPF2	ENSG00000197498.8	2074.62240	1202.45300	0.78680	19.85320	18.34650	K562	FXR1
RPF2	ENSG00000197498.8	593.66010	1104.00870	-0.89500	18.08320	16.93570	HepG2	NELFE
RPF2	ENSG00000197498.8	5902.17970	3450.16570	0.77450	18.30480	16.76370	K562	DDX47
RPF2	ENSG00000197498.8	369.37890	766.43020	-1.05310	17.10050	16.04980	HepG2	TIAL1
RPF2	ENSG00000197498.8	425.02240	989.95770	-1.21980	16.87660	15.30120	HepG2	G3BP1
RPF2	ENSG00000197498.8	455.90500	1006.27540	-1.14220	16.20790	14.74040	HepG2	IGF2BP2
RPF2	ENSG00000197498.8	429.97900	957.09170	-1.15440	15.73330	14.39140	HepG2	EIF2S1
RPF2	ENSG00000197498.8	336.46950	713.85160	-1.08510	14.51540	13.22450	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 148 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.

2 RBPs can affect the splicing of RPF2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RPF2	ENSG00000197498.8	chr6	+	111310230	111310268			111306095	111306341	111312949	111312989	-0.33700	0.00000	0.00000	excluded	K562	AQR
SE	RPF2	ENSG00000197498.8	chr6	+	111320913	111320990			111318385	111318467	111329240	111329340	-0.08100	0.00000	0.00000	excluded	K562	AQR
SE	RPF2	ENSG00000197498.8	chr6	+	111336956	111337059			111329240	111329340	111345385	111345530	-0.07900	0.00000	0.00000	excluded	K562	AQR
A3SS	RPF2	ENSG00000197498.8	chr6	+	111310190	111310268			111310230	111310268	111306095	111306341	0.06900	0.00000	0.00000	longer	K562	AQR
MXE	RPF2	ENSG00000197498.8	chr6	+	111318338	111318467	111320913	111320990	111312949	111312989	111329240	111329340	0.07900	0.00000	0.00000	1included	K562	AQR
MXE	RPF2	ENSG00000197498.8	chr6	+	111312949	111312989	111318385	111318467	111306208	111306341	111320913	111320990	0.37600	0.00000	0.00000	1included	K562	AQR
SE	RPF2	ENSG00000197498.8	chr6	+	111310190	111310268			111306183	111306341	111312949	111312989	-0.09600	0.00082	0.01785	excluded	K562	SF3B4
MXE	RPF2	ENSG00000197498.8	chr6	+	111318385	111318467	111320913	111320990	111312949	111312989	111329240	111329340	0.07600	0.00991	0.06289	1included	K562	AQR

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPF2

General Information

Functions

Localization

Domains (AlphaFold: RPF2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPF2 is not avaliable on ENCORE database.

11 proteins are bound to RPF2 RNA:

eCLIP assay for RPF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.

120 RBPs can affect the gene expression of RPF2 :

The Knockdown/knockout RNA-Seq assay for RPF2 is not available on ENCORE database.

2 RBPs can affect the splicing of RPF2 :

The Knockdown/knockout RNA-Seq assay for RPF2 is not avaliable on ENCORE database.