RP11-349A22.5

General Information

Gene Name : RP11-349A22.5
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-349A22.5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-349A22.5 RNA is bound by 25 proteins.

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eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

25 proteins are bound to RP11-349A22.5 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	58740665	58740736	-	intron-Distal,intron-Proximal	4.52980	24.44851	HepG2	U2AF2
chr14	58751944	58752021	-	intron-Distal	6.65799	20.82570	K562	PTBP1
chr14	58751948	58752076	-	intron-Distal	6.12011	19.79230	K562	MATR3
chr14	58758319	58758382	-	intron-Distal,intron-Proximal	7.10196	19.77792	HepG2	PRPF8
chr14	58751949	58752020	-	intron-Distal	4.63191	17.41639	HepG2	PTBP1
chr14	58740661	58740735	-	intron-Distal,intron-Proximal	4.23626	15.55509	K562	PRPF8
chr14	58751947	58752074	-	intron-Distal	4.16957	12.62753	HepG2	MATR3
chr14	58764598	58764648	-	intron-Distal	4.26489	12.55284	HepG2	RBM22
chr14	58758210	58758390	-	intron-Distal,intron-Proximal	3.43831	11.61753	K562	PRPF8
chr14	58740684	58740737	-	intron-Distal,intron-Proximal	5.31630	11.16668	K562	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-349A22.5 is not available on ENCORE database.
80 RBPs can affect the levels of RP11-349A22.5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

80 RBPs can affect the gene expression of RP11-349A22.5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-349A22.5	ENSG00000257621.3	1321.38340	645.20820	1.03410	20.18810	18.48060	HepG2	RBM25
RP11-349A22.5	ENSG00000257621.3	1215.17060	641.26740	0.92210	19.37240	18.08060	HepG2	TAF15
RP11-349A22.5	ENSG00000257621.3	2097.20910	1280.90450	0.71120	18.59010	17.26300	HepG2	ETF1
RP11-349A22.5	ENSG00000257621.3	1174.57860	680.47290	0.78740	16.02300	14.74160	HepG2	RECQL
RP11-349A22.5	ENSG00000257621.3	962.58440	580.37250	0.72980	13.92570	12.85740	HepG2	SRSF9
RP11-349A22.5	ENSG00000257621.3	1101.02460	681.18310	0.69260	13.99950	12.68160	HepG2	ZC3H8
RP11-349A22.5	ENSG00000257621.3	1929.58190	810.33930	1.25160	12.11040	10.65030	HepG2	NSUN2
RP11-349A22.5	ENSG00000257621.3	1609.83910	913.90100	0.81670	11.08170	9.92510	HepG2	HNRNPLL
RP11-349A22.5	ENSG00000257621.3	905.05170	454.94630	0.99220	11.12410	9.59310	HepG2	FUBP3
RP11-349A22.5	ENSG00000257621.3	1353.50360	760.44440	0.83170	10.59760	8.85320	HepG2	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-349A22.5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58740810	58740853	58752308	58752474	58740696	58740728	58758352	58758425	0.40900	0.00080	0.01650	1included	K562	SRSF1
SE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58753357	58753545			58752303	58752474	58758352	58758425	0.37000	0.00169	0.05829	included	HepG2	HNRNPC
SE	RP11-349A22.5	ENSG00000257621.3	chr14	-	58755435	58755531			58752449	58752474	58758352	58758440	0.24700	0.00211	0.09717	included	HepG2	NCBP2
A3SS	RP11-349A22.5	ENSG00000257621.3	chr14	-	58758352	58758440			58758352	58758425	58759783	58759856	0.46600	0.00554	0.03162	longer	K562	AQR

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-349A22.5

General Information

Functions

Localization

Domains (AlphaFold: RP11-349A22.5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

25 proteins are bound to RP11-349A22.5 RNA:

eCLIP assay for RP11-349A22.5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

80 RBPs can affect the gene expression of RP11-349A22.5 :

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not available on ENCORE database.

4 RBPs can affect the splicing of RP11-349A22.5 :

The Knockdown/knockout RNA-Seq assay for RP11-349A22.5 is not avaliable on ENCORE database.