ROBO1

General Information

Gene Name : ROBO1
Gene ID : ENSG00000169855.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ROBO1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ROBO1	ENSG00000169855.19	0.77	1.19	0.98	ENCSR000AEF
HepG2	ROBO1	ENSG00000169855.19	95.03	79.92	87.47	ENCSR985KAT
K562	ROBO1	ENSG00000169855.19	0.01	0.01	0.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ROBO1 is not avaliable on ENCORE database.

Proteins bound to RNA

ROBO1 RNA is bound by 44 proteins.

CanvasJS.com

eCLIP assay for ROBO1 is not avaliable on ENCORE database.

44 proteins are bound to ROBO1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	79068057	79068122	-	5'-UTR,intron-Distal	5.95435	72.49224	HepG2	DDX3X
chr3	79068301	79068344	-	5'-UTR,intron-Distal	4.64965	51.12741	HepG2	DDX3X
chr3	78902594	78902682	-	intron-Distal	4.60944	47.30047	HepG2	HNRNPL
chr3	79068451	79068502	-	5'-UTR,intron-Distal	4.28943	43.30582	HepG2	DDX3X
chr3	79068246	79068301	-	5'-UTR,intron-Distal,intron-Proximal	4.32127	41.76853	HepG2	DDX3X
chr3	79068344	79068390	-	5'-UTR,intron-Distal	3.73180	40.48171	HepG2	DDX3X
chr3	78902293	78902367	-	intron-Distal	5.25361	37.77245	HepG2	PTBP1
chr3	79067968	79068021	-	5'-UTR,intron-Distal	4.20400	36.29875	HepG2	DDX3X
chr3	79068182	79068240	-	5'-UTR,intron-Distal,intron-Proximal	4.90615	33.80151	HepG2	DDX3X
chr3	79068406	79068451	-	5'-UTR,intron-Distal	4.61088	32.72967	HepG2	DDX3X
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 305 entries

eCLIP assay for ROBO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ROBO1 is not available on ENCORE database.
100 RBPs can affect the levels of ROBO1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ROBO1 is not available on ENCORE database.

100 RBPs can affect the gene expression of ROBO1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ROBO1	ENSG00000169855.15	2425.80010	6066.56100	-1.32240	77.77680	76.02490	HepG2	SSB
ROBO1	ENSG00000169855.15	7313.66900	4122.51320	0.82700	45.02160	43.31300	HepG2	ACO1
ROBO1	ENSG00000169855.15	10996.81330	6864.25550	0.67980	43.98330	42.48180	HepG2	ZNF622
ROBO1	ENSG00000169855.15	6778.17520	3980.80260	0.76770	36.84670	35.27290	HepG2	SRSF9
ROBO1	ENSG00000169855.15	8036.57270	4398.16910	0.86960	33.82380	32.14460	HepG2	TAF15
ROBO1	ENSG00000169855.15	8855.27710	4876.42540	0.86060	30.35590	28.63650	HepG2	QKI
ROBO1	ENSG00000169855.15	5864.19490	3768.43610	0.63790	30.70430	27.89090	HepG2	KIF1C
ROBO1	ENSG00000169855.15	10036.45990	4647.74510	1.11050	29.57930	27.55850	HepG2	HNRNPK
ROBO1	ENSG00000169855.15	2220.57950	5374.01710	-1.27510	28.61130	26.83360	HepG2	DDX3X
ROBO1	ENSG00000169855.15	2018.37150	4190.54620	-1.05390	27.65910	26.01260	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ROBO1 is not available on ENCORE database.

13 RBPs can affect the splicing of ROBO1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.40100	0.00000	0.00000	included	HepG2	QKI
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	-0.37500	0.00000	0.00001	excluded	HepG2	U2AF2
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.34400	0.00000	0.00000	included	HepG2	PTBP1
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.33600	0.00000	0.00000	included	HepG2	SRSF1
A3SS	ROBO1	ENSG00000169855.15	chr3	-	78684922	78685258	78684922	78685093	78688893	78689048	-0.23000	0.00000	0.00001	shorter	HepG2	SRSF1
A3SS	ROBO1	ENSG00000169855.15	chr3	-	78684922	78685258	78684922	78685093	78688893	78689048	-0.14300	0.00001	0.00181	shorter	HepG2	SF3A3
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.23200	0.00002	0.00112	included	HepG2	HNRNPK
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.29900	0.00002	0.00335	included	HepG2	NCBP2
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.23500	0.00003	0.00293	included	HepG2	MATR3
SE	ROBO1	ENSG00000169855.15	chr3	-	78696778	78696805	78695297	78695340	78700881	78701079	0.31600	0.00007	0.01015	included	HepG2	DDX3X

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ROBO1

General Information

Functions

Localization

Domains (AlphaFold: ROBO1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ROBO1 is not avaliable on ENCORE database.

44 proteins are bound to ROBO1 RNA:

eCLIP assay for ROBO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ROBO1 is not available on ENCORE database.

100 RBPs can affect the gene expression of ROBO1 :

The Knockdown/knockout RNA-Seq assay for ROBO1 is not available on ENCORE database.

13 RBPs can affect the splicing of ROBO1 :

The Knockdown/knockout RNA-Seq assay for ROBO1 is not avaliable on ENCORE database.