RNPEP

General Information

Gene Name : RNPEP
Gene ID : ENSG00000176393.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RNPEP)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RNPEP	ENSG00000176393.10	44.83	39.90	42.36	ENCSR000AEF
HepG2	RNPEP	ENSG00000176393.10	28.00	38.38	33.19	ENCSR985KAT
K562	RNPEP	ENSG00000176393.10	85.85	87.94	86.89	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RNPEP is not avaliable on ENCORE database.

Proteins bound to RNA

RNPEP RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for RNPEP is not avaliable on ENCORE database.

27 proteins are bound to RNPEP RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	201965255	201965331	+	CDS,intron-Distal,intron-Proximal	4.79067	18.90953	K562	U2AF2
chr1	201965263	201965318	+	CDS,intron-Distal,intron-Proximal	3.49969	12.64476	K562	U2AF1
chr1	201962077	201962174	+	intron-Distal	4.79676	12.63672	K562	PTBP1
chr1	201975013	201975070	+	3'-UTR	3.65902	12.14680	K562	PABPC4
chr1	201963316	201963432	+	intron-Distal	4.57048	11.46231	K562	MATR3
chr1	201965257	201965314	+	CDS,intron-Distal,intron-Proximal	4.13857	11.25083	HepG2	U2AF2
chr1	201962064	201962181	+	intron-Distal	4.75798	11.19912	K562	MATR3
chr1	201961166	201961199	+	intron-Distal	4.59950	10.68394	K562	MATR3
chr1	201974831	201975052	+	3'-UTR,CDS	3.44181	10.61627	HepG2	SUB1
chr1	201961199	201961224	+	intron-Distal	4.46959	10.39734	K562	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 64 entries

eCLIP assay for RNPEP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RNPEP is not available on ENCORE database.
93 RBPs can affect the levels of RNPEP.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RNPEP is not available on ENCORE database.

93 RBPs can affect the gene expression of RNPEP :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RNPEP	ENSG00000176393.6	152.84480	906.03000	-2.56750	98.64560	95.93360	HepG2	ZC3H8
RNPEP	ENSG00000176393.6	1504.87340	2895.28330	-0.94410	28.93220	26.34360	K562	HNRNPU
RNPEP	ENSG00000176393.6	751.57930	1439.91610	-0.93800	26.39260	25.17130	HepG2	SSB
RNPEP	ENSG00000176393.6	492.31130	955.09250	-0.95610	20.74570	19.19530	HepG2	HNRNPU
RNPEP	ENSG00000176393.6	730.19240	1275.69650	-0.80490	19.64640	18.10360	HepG2	SLBP
RNPEP	ENSG00000176393.6	1197.98350	2183.01820	-0.86570	17.42150	16.00590	K562	HNRNPC
RNPEP	ENSG00000176393.6	227.14840	720.25780	-1.66490	17.61060	15.68920	HepG2	SNRNP70
RNPEP	ENSG00000176393.6	500.93380	918.06550	-0.87400	16.67790	15.04370	HepG2	PRPF4
RNPEP	ENSG00000176393.6	639.00430	1109.10840	-0.79550	16.37340	14.92490	HepG2	SRSF7
RNPEP	ENSG00000176393.6	1087.16350	1756.82230	-0.69240	16.02510	14.77480	HepG2	ETF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 106 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RNPEP is not available on ENCORE database.

28 RBPs can affect the splicing of RNPEP :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RNPEP	ENSG00000176393.6	chr1	+	201958510	201958659			201958031	201958172	201965274	201965391	-0.11000	0.00000	0.00000	excluded	K562	AQR
A3SS	RNPEP	ENSG00000176393.6	chr1	+	201966446	201966682			201966532	201966682	201965274	201965391	-0.07500	0.00000	0.00427	shorter	K562	NPM1
MXE	RNPEP	ENSG00000176393.6	chr1	+	201958510	201958659	201965274	201965537	201958031	201958172	201966446	201966682	-0.15900	0.00000	0.00002	2included	K562	AQR
MXE	RNPEP	ENSG00000176393.6	chr1	+	201958510	201958659	201965274	201965537	201958031	201958172	201966446	201966682	-0.34100	0.00000	0.00044	2included	HepG2	XRN2
MXE	RNPEP	ENSG00000176393.6	chr1	+	201965274	201965391	201966446	201966682	201958510	201958659	201969029	201969143	0.15700	0.00000	0.00129	1included	K562	PUM1
MXE	RNPEP	ENSG00000176393.6	chr1	+	201965274	201965391	201966446	201966682	201958510	201958659	201969029	201969143	-0.27300	0.00000	0.00000	2included	K562	FXR2
A5SS	RNPEP	ENSG00000176393.6	chr1	+	201965274	201965537			201965274	201965391	201966446	201966682	0.05100	0.00001	0.00153	longer	K562	U2AF2
MXE	RNPEP	ENSG00000176393.6	chr1	+	201958510	201958659	201965274	201965537	201958031	201958172	201966446	201966682	-0.16000	0.00001	0.00928	2included	K562	MTPAP
SE	RNPEP	ENSG00000176393.6	chr1	+	201958510	201958659			201958031	201958172	201965274	201965391	-0.09700	0.00003	0.02641	excluded	K562	UTP3
MXE	RNPEP	ENSG00000176393.6	chr1	+	201966446	201966682	201969029	201969143	201965274	201965391	201970503	201970616	-0.15100	0.00004	0.00305	2included	K562	UCHL5

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RNPEP

General Information

Functions

Localization

Domains (AlphaFold: RNPEP)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RNPEP is not avaliable on ENCORE database.

27 proteins are bound to RNPEP RNA:

eCLIP assay for RNPEP is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RNPEP is not available on ENCORE database.

93 RBPs can affect the gene expression of RNPEP :

The Knockdown/knockout RNA-Seq assay for RNPEP is not available on ENCORE database.

28 RBPs can affect the splicing of RNPEP :

The Knockdown/knockout RNA-Seq assay for RNPEP is not avaliable on ENCORE database.