RGN

General Information

Gene Name : RGN
Gene ID : ENSG00000130988.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RGN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RGN	ENSG00000130988.12	0.00	0.00	0.00	ENCSR000AEF
HepG2	RGN	ENSG00000130988.12	24.47	50.34	37.41	ENCSR985KAT
K562	RGN	ENSG00000130988.12	0.08	0.06	0.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RGN is not avaliable on ENCORE database.

Proteins bound to RNA

RGN RNA is bound by 6 proteins.

CanvasJS.com

eCLIP assay for RGN is not avaliable on ENCORE database.

6 proteins are bound to RGN RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	46943972	46944036	+	CDS,intron-Proximal	4.88573	11.25775	HepG2	PRPF8
chrX	46943859	46943953	+	CDS	4.36687	4.69889	HepG2	GRWD1
chrX	46951628	46951682	+	intron-Proximal	3.76655	4.54206	HepG2	PRPF8
chrX	46937915	46937967	+	5'-UTR	5.19023	3.85934	HepG2	DDX3X
chrX	46950849	46950901	+	intron-Distal	4.48627	3.82973	HepG2	HLTF
chrX	46951110	46951175	+	CDS,intron-Distal	3.15373	3.79741	HepG2	GRWD1
chrX	46951053	46951123	+	CDS,intron-Distal,intron-Proximal	3.24789	3.42396	HepG2	U2AF2
chrX	46948418	46948490	+	intron-Distal	3.71286	3.04332	HepG2	SRSF9
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 8 of 8 entries

eCLIP assay for RGN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RGN is not available on ENCORE database.
123 RBPs can affect the levels of RGN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.

123 RBPs can affect the gene expression of RGN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RGN	ENSG00000130988.8	549.75690	1586.56030	-1.52900	59.50390	57.70890	HepG2	PTBP1
RGN	ENSG00000130988.8	217.37730	1993.44290	-3.19700	55.65510	53.75740	HepG2	AKAP1
RGN	ENSG00000130988.8	169.41540	651.08770	-1.94230	51.30150	49.49890	HepG2	ACO1
RGN	ENSG00000130988.8	572.89390	1402.68290	-1.29180	45.73320	44.03470	HepG2	SRSF9
RGN	ENSG00000130988.8	1557.96080	622.90450	1.32250	45.80150	43.91900	HepG2	DKC1
RGN	ENSG00000130988.8	689.04310	1651.85170	-1.26140	43.73330	41.92290	HepG2	SF3B4
RGN	ENSG00000130988.8	246.32920	813.55600	-1.72370	40.88300	39.35080	HepG2	RBM22
RGN	ENSG00000130988.8	1700.97580	797.76830	1.09220	37.67520	36.29080	HepG2	SSB
RGN	ENSG00000130988.8	374.76210	912.75050	-1.28420	35.91150	34.26810	HepG2	PUM1
RGN	ENSG00000130988.8	361.43840	918.86690	-1.34610	35.41720	34.15530	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 123 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.

14 RBPs can affect the splicing of RGN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RGN	ENSG00000130988.8	chrX	+	46949174	46949390	46943816	46943999	46951076	46951208	-0.21600	0.00000	0.00003	excluded	HepG2	QKI
SE	RGN	ENSG00000130988.8	chrX	+	46949174	46949390	46943816	46943999	46951076	46951208	-0.43600	0.00000	0.00000	excluded	HepG2	SRSF1
SE	RGN	ENSG00000130988.8	chrX	+	46949174	46949390	46943816	46943999	46951076	46951208	0.20600	0.00000	0.00015	included	HepG2	SRSF9
SE	RGN	ENSG00000130988.8	chrX	+	46939715	46940335	46937774	46938108	46940528	46940706	0.26000	0.00002	0.00534	included	HepG2	SSB
SE	RGN	ENSG00000130988.8	chrX	+	46939715	46940335	46937774	46938108	46940528	46940706	-0.16700	0.00002	0.00212	excluded	HepG2	PCBP1
SE	RGN	ENSG00000130988.8	chrX	+	46939715	46940335	46937774	46938108	46940528	46940706	-0.16500	0.00011	0.02647	excluded	HepG2	TIA1
SE	RGN	ENSG00000130988.8	chrX	+	46939715	46940335	46937774	46938108	46940528	46940592	-0.13800	0.00021	0.03745	excluded	HepG2	KHSRP
SE	RGN	ENSG00000130988.8	chrX	+	46949174	46949390	46943816	46943999	46951076	46951208	-0.21300	0.00036	0.02735	excluded	HepG2	RBM22
SE	RGN	ENSG00000130988.8	chrX	+	46951076	46951208	46943816	46943999	46951459	46951614	0.07700	0.00044	0.05992	included	HepG2	HNRNPUL1
SE	RGN	ENSG00000130988.8	chrX	+	46949174	46949390	46943816	46943999	46951076	46951208	-0.13300	0.00049	0.05433	excluded	HepG2	TAF15

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RGN

General Information

Functions

Localization

Domains (AlphaFold: RGN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RGN is not avaliable on ENCORE database.

6 proteins are bound to RGN RNA:

eCLIP assay for RGN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.

123 RBPs can affect the gene expression of RGN :

The Knockdown/knockout RNA-Seq assay for RGN is not available on ENCORE database.

14 RBPs can affect the splicing of RGN :

The Knockdown/knockout RNA-Seq assay for RGN is not avaliable on ENCORE database.