RAB4A

General Information

Gene Name : RAB4A
Gene ID : ENSG00000168118.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB4A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB4A	ENSG00000168118.11	7.79	9.88	8.84	ENCSR000AEF
HepG2	RAB4A	ENSG00000168118.11	46.77	67.99	57.38	ENCSR985KAT
K562	RAB4A	ENSG00000168118.11	15.07	17.99	16.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB4A is not avaliable on ENCORE database.

Proteins bound to RNA

RAB4A RNA is bound by 23 proteins.

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eCLIP assay for RAB4A is not avaliable on ENCORE database.

23 proteins are bound to RAB4A RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	229406950	229407008	+	5'-UTR	4.69977	26.85189	HepG2	DDX3X
chr1	229407269	229407348	+	intron-Distal	6.44563	25.22923	HepG2	EFTUD2
chr1	229407174	229407243	+	intron-Distal,intron-Proximal	4.96344	23.50136	HepG2	EFTUD2
chr1	229407258	229407355	+	intron-Distal	5.02429	20.02596	HepG2	FAM120A
chr1	229406869	229406950	+	5'-UTR	3.96212	15.38022	HepG2	DDX3X
chr1	229407008	229407089	+	5'-UTR,CDS	3.65448	14.95327	HepG2	DDX3X
chr1	229407301	229407350	+	intron-Distal	4.65172	14.11205	HepG2	PRPF4
chr1	229414984	229415071	+	intron-Distal	3.95721	10.98840	HepG2	SUGP2
chr1	229415344	229415418	+	intron-Distal	3.93394	10.51675	HepG2	SUGP2
chr1	229439777	229439857	+	3'-UTR	5.20707	10.43585	K562	IGF2BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 70 entries

eCLIP assay for RAB4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB4A is not available on ENCORE database.
107 RBPs can affect the levels of RAB4A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB4A is not available on ENCORE database.

107 RBPs can affect the gene expression of RAB4A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB4A	ENSG00000168118.7	839.75240	1950.36050	-1.21570	50.63160	48.84960	HepG2	SRSF9
RAB4A	ENSG00000168118.7	1131.75570	2389.30210	-1.07800	32.77200	31.00230	HepG2	QKI
RAB4A	ENSG00000168118.7	1184.21830	2067.36810	-0.80390	25.03960	23.92530	HepG2	SRFBP1
RAB4A	ENSG00000168118.7	1268.01900	2206.02300	-0.79890	23.60730	22.30570	HepG2	PTBP1
RAB4A	ENSG00000168118.7	1424.39070	2397.38130	-0.75110	23.35090	22.26970	HepG2	SRSF1
RAB4A	ENSG00000168118.7	808.30490	2257.14080	-1.48150	22.51790	20.70260	HepG2	EIF4B
RAB4A	ENSG00000168118.7	562.90830	1133.44930	-1.00970	20.18650	19.06270	HepG2	TIAL1
RAB4A	ENSG00000168118.7	1309.04460	2063.65860	-0.65670	19.26400	17.86060	HepG2	SUCLG1
RAB4A	ENSG00000168118.7	510.97760	1448.67550	-1.50340	17.80080	15.92540	HepG2	CNOT7
RAB4A	ENSG00000168118.7	1010.77700	2318.58260	-1.19780	16.62180	15.06270	HepG2	EIF4A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 125 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB4A is not available on ENCORE database.

22 RBPs can affect the splicing of RAB4A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RAB4A	ENSG00000168118.7	chr1	+	229422232	229422313	229406821	229407117	229424475	229424629	-0.16400	0.00000	excluded	HepG2	U2AF1
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.24700	0.00004	excluded	HepG2	PRPF8
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.10800	0.00001	excluded	HepG2	HNRNPK
SE	RAB4A	ENSG00000168118.7	chr1	+	229422232	229422313	229406821	229407117	229424475	229424629	-0.26400	0.00000	excluded	HepG2	U2AF2
SE	RAB4A	ENSG00000168118.7	chr1	+	229438608	229438736	229434723	229434819	229439552	229439641	-0.10200	0.00006	excluded	K562	AQR
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.09100	0.00083	excluded	HepG2	DDX3X
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.45700	0.00000	excluded	K562	PUS1
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.09400	0.00078	excluded	HepG2	DDX6
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.21500	0.00000	excluded	HepG2	SRSF1
SE	RAB4A	ENSG00000168118.7	chr1	+	229424475	229424590	229406878	229407117	229431594	229431657	-0.23400	0.00038	excluded	K562	UTP18

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB4A

General Information

Functions

Localization

Domains (AlphaFold: RAB4A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB4A is not avaliable on ENCORE database.

23 proteins are bound to RAB4A RNA:

eCLIP assay for RAB4A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB4A is not available on ENCORE database.

107 RBPs can affect the gene expression of RAB4A :

The Knockdown/knockout RNA-Seq assay for RAB4A is not available on ENCORE database.

22 RBPs can affect the splicing of RAB4A :

The Knockdown/knockout RNA-Seq assay for RAB4A is not avaliable on ENCORE database.