PTPN7

General Information

Gene Name : PTPN7
Gene ID : ENSG00000143851.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTPN7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPN7	ENSG00000143851.15	46.53	69.54	58.04	ENCSR000AEF
HepG2	PTPN7	ENSG00000143851.15	0.00	0.00	0.00	ENCSR985KAT
K562	PTPN7	ENSG00000143851.15	136.60	96.76	116.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPN7 is not avaliable on ENCORE database.

Proteins bound to RNA

PTPN7 RNA is bound by 13 proteins.

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eCLIP assay for PTPN7 is not avaliable on ENCORE database.

13 proteins are bound to PTPN7 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	202128756	202128841	-	5'-UTR,intron-Distal	4.70345	41.76886	K562	PTBP1
chr1	202128860	202128919	-	5'-UTR,intron-Distal	4.02296	17.15704	K562	PTBP1
chr1	202117109	202117194	-	3'-UTR,intron-Distal	4.44741	12.76076	K562	UPF1
chr1	202117023	202117109	-	3'-UTR,intron-Distal	3.75770	9.74385	K562	UPF1
chr1	202130285	202130334	-	5'-UTR,intron-Distal	4.78806	9.12458	K562	XRN2
chr1	202128310	202128403	-	intron-Distal,intron-Proximal	5.31211	8.03507	K562	AQR
chr1	202117214	202117260	-	3'-UTR,intron-Distal,intron-Proximal	4.33785	7.83400	K562	UPF1
chr1	202128346	202128405	-	intron-Distal,intron-Proximal	3.78811	6.43995	K562	PRPF8
chr1	202121576	202121673	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.65307	6.39176	K562	AQR
chr1	202116325	202116441	-	3'-UTR,intron-Distal	4.65588	6.19943	K562	RBM15
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 33 entries

eCLIP assay for PTPN7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPN7 is not available on ENCORE database.
104 RBPs can affect the levels of PTPN7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTPN7 is not available on ENCORE database.

104 RBPs can affect the gene expression of PTPN7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPN7	ENSG00000143851.11	663.08580	2913.85310	-2.13570	103.31050	99.91150	K562	POLR2G
PTPN7	ENSG00000143851.11	815.26030	3798.88620	-2.22020	74.43250	70.91860	K562	PCBP3
PTPN7	ENSG00000143851.11	1318.91490	3306.75120	-1.32610	73.84960	70.84200	K562	MTPAP
PTPN7	ENSG00000143851.11	1900.86540	3674.20930	-0.95080	53.50320	50.93400	K562	NSUN2
PTPN7	ENSG00000143851.11	1265.37870	2922.70130	-1.20770	39.22110	36.59630	K562	SYNCRIP
PTPN7	ENSG00000143851.11	1106.98610	2596.38320	-1.22990	33.52820	30.68900	K562	SAFB
PTPN7	ENSG00000143851.11	1994.69580	3466.41210	-0.79730	31.72370	29.42120	K562	WDR43
PTPN7	ENSG00000143851.11	1522.46430	3333.55580	-1.13070	27.06610	24.52650	K562	WDR3
PTPN7	ENSG00000143851.11	1130.35930	2581.10730	-1.19120	24.78950	22.13470	K562	HNRNPA1
PTPN7	ENSG00000143851.11	2313.02090	3625.34080	-0.64830	17.71630	15.80490	K562	SF3A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 104 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPN7 is not available on ENCORE database.

15 RBPs can affect the splicing of PTPN7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTPN7	ENSG00000143851.11	chr1	-	202118362	202118500	202116140	202117827	202119438	202119552	-0.09200	0.00000	0.00012	excluded	K562	SRSF1
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	0.39700	0.00000	0.00000	longer	K562	U2AF2
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	-0.15400	0.00000	0.00361	shorter	K562	DROSHA
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	0.14400	0.00000	0.00001	longer	K562	SF3B1
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	0.32700	0.00000	0.00045	longer	K562	U2AF1
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	-0.15800	0.00001	0.01847	shorter	K562	LARP4
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	0.16100	0.00002	0.01172	longer	K562	HNRNPK
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	0.27600	0.00004	0.00425	longer	K562	SF3B4
SE	PTPN7	ENSG00000143851.11	chr1	-	202127245	202127429	202126866	202126951	202128408	202128582	-0.20100	0.00005	0.00350	excluded	K562	TARDBP
A3SS	PTPN7	ENSG00000143851.11	chr1	-	202126866	202127066	202126866	202126951	202127245	202127429	-0.16000	0.00006	0.02220	shorter	K562	HNRNPUL1

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPN7

General Information

Functions

Localization

Domains (AlphaFold: PTPN7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPN7 is not avaliable on ENCORE database.

13 proteins are bound to PTPN7 RNA:

eCLIP assay for PTPN7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPN7 is not available on ENCORE database.

104 RBPs can affect the gene expression of PTPN7 :

The Knockdown/knockout RNA-Seq assay for PTPN7 is not available on ENCORE database.

15 RBPs can affect the splicing of PTPN7 :

The Knockdown/knockout RNA-Seq assay for PTPN7 is not avaliable on ENCORE database.