POLR2J2

General Information

Gene Name       : POLR2J2
Gene ID             : ENSG00000228049.7
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: POLR2J2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLR2J2ENSG00000228049.72.822.212.51ENCSR000AEF
HepG2POLR2J2ENSG00000228049.71.130.520.82ENCSR985KAT
K562POLR2J2ENSG00000228049.71.671.291.48ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLR2J2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLR2J2 RNA is bound by 5 proteins.  







eCLIP assay for POLR2J2 is not avaliable on ENCORE database.





5 proteins are bound to POLR2J2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7102279579102279646-3'-UTR,CDS,intron-Distal4.607365.44793K562ZNF622
chr7102306595102306697-3'-UTR,CDS,intron-Distal,intron-Proximal5.221837.28294K562AQR
chr7102305385102305491-intron-Distal4.134314.56225K562FUS
chr7102279443102279548-intron-Distal,intron-Proximal4.127143.85435K562PRPF8
chr7102287252102287303-intron-Distal4.185563.18981K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLR2J2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLR2J2 is not available on ENCORE database.

  • 96 RBPs can affect the levels of POLR2J2.  








The Knockdown/knockout RNA-Seq assay for POLR2J2 is not available on ENCORE database.





96 RBPs can affect the gene expression of POLR2J2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLR2J2ENSG00000267645.176.586700.0000099999.9999010.841009.17690HepG2ABCF1
POLR2J2ENSG00000267645.10.0000041.38610-99999.9999914.2419013.09190HepG2ACO1
POLR2J2ENSG00000267645.144.842800.0000099999.999903.038601.99650HepG2ADAR
POLR2J2ENSG00000228049.5118.9618022.853302.379903.231702.66230HepG2AKAP1
POLR2J2ENSG00000267645.12.06150213.89300-6.697005.490404.77100HepG2AKAP1
POLR2J2ENSG00000267645.12.7967041.56670-3.893609.458808.14530HepG2AKAP8L
POLR2J2ENSG00000228049.53.6731075.61520-4.363603.748901.81250HepG2APOBEC3C
POLR2J2ENSG00000267645.127.9464096.16500-1.782902.156701.53680HepG2AUH
POLR2J2ENSG00000228049.513.3206085.50150-2.6823010.285108.42200HepG2BCCIP
POLR2J2ENSG00000228049.510.9261074.27400-2.765105.270604.06640HepG2BCLAF1
POLR2J2ENSG00000267645.10.0000018.03070-99999.999994.991603.99230HepG2CALR
POLR2J2ENSG00000228049.511.5205060.16330-2.384705.818602.85740HepG2CEBPZ
POLR2J2ENSG00000267645.152.283900.0000099999.9999011.676508.09550HepG2CEBPZ
POLR2J2ENSG00000267645.10.9248041.36050-5.4829012.0300010.84170HepG2CKAP4
POLR2J2ENSG00000228049.512.6606080.93420-2.676402.391201.68290HepG2CNOT7
POLR2J2ENSG00000228049.59.8678078.64060-2.9945011.214008.92320HepG2DDX27
POLR2J2ENSG00000267645.130.64500204.78960-2.740401.993201.45340HepG2DDX3X
POLR2J2ENSG00000228049.515.2558084.07620-2.462309.416508.08570HepG2DDX55
POLR2J2ENSG00000228049.595.8069043.226901.148103.251302.16310HepG2DDX5
POLR2J2ENSG00000267645.10.0000060.59230-99999.9999918.3658016.12090HepG2DDX5
POLR2J2ENSG00000267645.124.175000.0000099999.999908.004706.42560HepG2DHX30
POLR2J2ENSG00000267645.16.29570169.10710-4.747403.734603.05260HepG2EIF2S1
POLR2J2ENSG00000228049.5106.7884020.016902.415402.881902.23050HepG2EIF4A3
POLR2J2ENSG00000267645.10.00000186.76600-99999.999997.107206.08350HepG2EIF4A3
POLR2J2ENSG00000267645.10.00000182.06670-99999.999996.971905.90920HepG2EIF4B
POLR2J2ENSG00000267645.150.593900.0000099999.9999013.0851011.01150HepG2ESF1
POLR2J2ENSG00000267645.129.892700.0000099999.999908.617406.81230HepG2FASTKD2
POLR2J2ENSG00000267645.156.974200.0000099999.999904.374203.42290HepG2FIP1L1
POLR2J2ENSG00000228049.510.2478032.68930-1.673502.705601.92770HepG2FUBP3
POLR2J2ENSG00000228049.595.8617019.820702.273806.665405.27290HepG2G3BP2
POLR2J2ENSG00000267645.19.37350185.97280-4.310403.486302.47950HepG2G3BP2
POLR2J2ENSG00000228049.53.2099074.95960-4.545504.147802.78750HepG2GRSF1
POLR2J2ENSG00000228049.55.7371027.73950-2.273601.910701.36250HepG2HNRNPA1
POLR2J2ENSG00000267645.145.369100.0000099999.999902.063501.49620HepG2HNRNPA1
POLR2J2ENSG00000228049.5162.6941018.869803.107902.991802.26650HepG2HNRNPK
POLR2J2ENSG00000267645.159.240200.0000099999.999909.568607.98040HepG2HNRNPM
POLR2J2ENSG00000228049.587.3541030.645201.511105.950105.08920HepG2HNRNPU
POLR2J2ENSG00000228049.5200.7610019.030003.399005.279504.37370HepG2IGF2BP2
POLR2J2ENSG00000267645.120.61300177.76380-3.108302.186801.57830HepG2IGF2BP2
POLR2J2ENSG00000228049.562.2323031.304100.991202.575701.86630HepG2ILF2
POLR2J2ENSG00000228049.598.7731020.263902.285103.312102.62770HepG2MATR3
POLR2J2ENSG00000228049.516.8636070.06200-2.054703.738002.79980HepG2MSI2
POLR2J2ENSG00000267645.185.189400.0000099999.999909.288907.88870HepG2MSI2
POLR2J2ENSG00000267645.15.71500194.28600-5.087304.226003.44890HepG2NCBP2
POLR2J2ENSG00000228049.597.7562018.516202.4003010.811909.40740HepG2PABPC4
POLR2J2ENSG00000267645.10.00000172.80890-99999.999996.885305.75500HepG2PABPC4
POLR2J2ENSG00000267645.115.921000.0000099999.999904.881303.79500HepG2PARN
POLR2J2ENSG00000267645.160.788100.0000099999.9999013.2942011.74900HepG2PPIL4
POLR2J2ENSG00000267645.10.0000039.37100-99999.999992.738801.93400HepG2PRPF8
POLR2J2ENSG00000228049.518.21490183.35630-3.331505.213104.51100HepG2PTBP1
POLR2J2ENSG00000267645.158.918500.0000099999.999902.697002.15550HepG2PTBP1
POLR2J2ENSG00000228049.514.7516061.98550-2.071101.867601.36440HepG2PUF60
POLR2J2ENSG00000228049.511.1109065.82430-2.566602.364601.80790HepG2PUM1
POLR2J2ENSG00000228049.555.0896021.067501.386702.639802.03420HepG2PUS1
POLR2J2ENSG00000267645.10.0000042.15200-99999.9999914.6099013.39130HepG2PUS1
POLR2J2ENSG00000267645.173.350300.0000099999.9999015.3077014.00770HepG2QKI
POLR2J2ENSG00000228049.5126.5462027.859102.183305.708503.00110HepG2RBM17
POLR2J2ENSG00000267645.151.435200.0000099999.999908.448807.31960HepG2RBM25
POLR2J2ENSG00000267645.132.269406.191102.381804.374003.10670HepG2RBM27
POLR2J2ENSG00000228049.50.0000043.90620-99999.999999.861306.21610HepG2RBM34
POLR2J2ENSG00000228049.525.2044064.09670-1.346603.286502.43890HepG2RRP9
POLR2J2ENSG00000228049.573.9313016.410402.171505.369404.41230HepG2SF3A3
POLR2J2ENSG00000267645.10.0000065.69960-99999.9999920.7309018.82830HepG2SF3A3
POLR2J2ENSG00000228049.541.86270190.98230-2.189703.752103.07940HepG2SF3B4
POLR2J2ENSG00000267645.156.380300.0000099999.9999016.2533015.00080HepG2SF3B4
POLR2J2ENSG00000267645.143.089600.0000099999.999903.162902.48250HepG2SMN1
POLR2J2ENSG00000228049.5139.8159044.958101.636808.742406.98750HepG2SMNDC1
POLR2J2ENSG00000228049.56.0164042.90610-2.834203.686201.81480HepG2SND1
POLR2J2ENSG00000267645.14.50500104.23600-4.5322018.8273017.82610HepG2SRFBP1
POLR2J2ENSG00000228049.511.5919061.23030-2.401102.098101.54410HepG2SRSF5
POLR2J2ENSG00000267645.163.447200.0000099999.9999017.4838016.10320HepG2SRSF5
POLR2J2ENSG00000267645.179.0903032.365101.289003.504502.73440HepG2SRSF7
POLR2J2ENSG00000267645.10.0000090.48970-99999.9999926.9956025.76480HepG2SSB
POLR2J2ENSG00000267645.152.324300.0000099999.999902.669401.74340HepG2SUPT6H
POLR2J2ENSG00000228049.511.0633083.68030-2.9191011.200109.99090HepG2SUPV3L1
POLR2J2ENSG00000228049.550.28590179.05120-1.832103.132902.54140HepG2TAF15
POLR2J2ENSG00000267645.10.0000033.99870-99999.999992.379401.44850HepG2TFIP11
POLR2J2ENSG00000228049.56.5824029.80160-2.178702.042901.59990HepG2TIAL1
POLR2J2ENSG00000267645.123.929600.0000099999.999903.213802.68140HepG2TIAL1
POLR2J2ENSG00000228049.567.1674030.042201.160703.269302.66790HepG2TRIM56
POLR2J2ENSG00000267645.129.792400.0000099999.999908.967308.04220HepG2TRIM56
POLR2J2ENSG00000228049.532.0713074.05290-1.207302.422801.83150HepG2U2AF1
POLR2J2ENSG00000228049.54.6519064.16590-3.785903.151802.25890HepG2UBE2L3
POLR2J2ENSG00000267645.124.425700.0000099999.999906.298405.00200HepG2UBE2L3
POLR2J2ENSG00000228049.520.4753082.37450-2.008304.777003.83340HepG2XRN2
POLR2J2ENSG00000267645.127.6322064.08080-1.213503.369302.78260HepG2ZNF622
POLR2J2ENSG00000267645.10.0000028.05400-99999.999993.080502.02890K562AKAP8
POLR2J2ENSG00000267645.112.698900.0000099999.999903.332302.37370K562BOP1
POLR2J2ENSG00000267645.10.0000030.47930-99999.999993.294601.99310K562CCDC124
POLR2J2ENSG00000267645.10.0000067.45910-99999.9999917.0999013.46900K562CKAP4
POLR2J2ENSG00000228049.5117.7620054.245901.118202.597501.57770K562CSTF2
POLR2J2ENSG00000228049.5117.1010050.074901.225505.841604.05890K562EIF4B
POLR2J2ENSG00000228049.511.1041036.56020-1.719202.966302.23220K562G3BP2
POLR2J2ENSG00000267645.131.235800.0000099999.999908.532006.04530K562GEMIN5
POLR2J2ENSG00000228049.524.2535067.36440-1.473803.507801.38800K562HNRNPH1
POLR2J2ENSG00000228049.5165.4834090.393600.872303.031301.73610K562HNRNPK
POLR2J2ENSG00000228049.522.0665095.17140-2.108702.954002.08540K562MAGOH
POLR2J2ENSG00000267645.10.0000026.97360-99999.999992.885301.78130K562MAK16
POLR2J2ENSG00000267645.152.893100.0000099999.999903.103402.24910K562MTPAP
POLR2J2ENSG00000267645.1102.6587011.261203.188305.497703.34820K562NOL12
POLR2J2ENSG00000267645.112.367200.0000099999.999903.473602.32840K562PABPN1
POLR2J2ENSG00000228049.567.55280110.56580-0.710802.297601.55060K562PPIG
POLR2J2ENSG00000228049.5311.0730084.302601.883505.680804.93610K562PUS1
POLR2J2ENSG00000267645.10.0000026.30550-99999.999992.929502.37360K562PUS1
POLR2J2ENSG00000228049.58.9929034.87850-1.955502.969901.49240K562RAVER1
POLR2J2ENSG00000228049.5133.4181082.176300.699102.814602.21700K562RBM15
POLR2J2ENSG00000267645.114.778900.0000099999.999904.804203.49560K562RCC2
POLR2J2ENSG00000228049.519.3470093.23560-2.268803.212102.02510K562NELFE
POLR2J2ENSG00000228049.5126.6949053.219401.251203.114402.24530K562RPS19
POLR2J2ENSG00000267645.10.0000042.09890-99999.9999912.636709.19760K562SAFB2
POLR2J2ENSG00000267645.167.272106.471003.377804.346402.49610K562SDAD1
POLR2J2ENSG00000228049.544.4871092.56730-1.057102.843901.85640K562SF3B1
POLR2J2ENSG00000267645.143.705100.0000099999.999905.409103.04190K562SRP68
POLR2J2ENSG00000228049.5211.9677090.680301.224907.098505.97360K562SRSF1
POLR2J2ENSG00000228049.5176.6660048.515501.864404.777303.22190K562SRSF7
POLR2J2ENSG00000228049.553.77680116.87570-1.119904.032002.47110K562STAU1
POLR2J2ENSG00000228049.5162.2801049.154901.723005.966903.64100K562SUPT6H
POLR2J2ENSG00000228049.55.1319036.58490-2.833705.858204.68990K562U2AF2
POLR2J2ENSG00000267645.151.739908.188302.659507.332704.70260K562UPF2
POLR2J2ENSG00000267645.10.0000026.70020-99999.999992.963901.60980K562UTP18
POLR2J2ENSG00000267645.114.3505044.89040-1.645303.487302.13310K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLR2J2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of POLR2J2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for POLR2J2 is not avaliable on ENCORE database.