PNPLA2

General Information

Gene Name : PNPLA2
Gene ID : ENSG00000177666.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PNPLA2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PNPLA2	ENSG00000177666.16	0.96	4.38	2.67	ENCSR000AEF
HepG2	PNPLA2	ENSG00000177666.16	56.86	16.09	36.48	ENCSR985KAT
K562	PNPLA2	ENSG00000177666.16	26.79	14.39	20.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PNPLA2 is not avaliable on ENCORE database.

Proteins bound to RNA

PNPLA2 RNA is bound by 46 proteins.

CanvasJS.com

eCLIP assay for PNPLA2 is not avaliable on ENCORE database.

46 proteins are bound to PNPLA2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	823864	824050	+	CDS,intron-Proximal	4.82021	42.68334	K562	AQR
chr11	819575	819671	+	5'-UTR	4.83826	42.26360	HepG2	DDX3X
chr11	823913	824036	+	CDS,intron-Proximal	4.17343	39.56807	HepG2	EFTUD2
chr11	820005	820175	+	intron-Distal	3.89548	37.36466	K562	DROSHA
chr11	823882	823978	+	intron-Proximal	6.54673	33.45833	HepG2	AQR
chr11	823608	823666	+	intron-Proximal	5.18434	26.87651	HepG2	AQR
chr11	822332	822387	+	intron-Proximal	4.12318	26.05858	HepG2	BUD13
chr11	819572	819660	+	5'-UTR,intron-Proximal	3.50577	21.38253	HepG2	NCBP2
chr11	822039	822134	+	intron-Distal,intron-Proximal	3.88155	20.82197	HepG2	EFTUD2
chr11	820184	820252	+	intron-Distal	4.41519	20.32307	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 187 entries

eCLIP assay for PNPLA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PNPLA2 is not available on ENCORE database.
102 RBPs can affect the levels of PNPLA2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PNPLA2 is not available on ENCORE database.

102 RBPs can affect the gene expression of PNPLA2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PNPLA2	ENSG00000177666.11	690.83320	1608.93180	-1.21970	35.74120	34.29030	HepG2	RBM22
PNPLA2	ENSG00000177666.11	632.30230	1363.28760	-1.10840	31.33150	30.12020	HepG2	SRSF1
PNPLA2	ENSG00000177666.11	1628.68740	869.05690	0.90610	25.29750	23.60670	HepG2	SRSF7
PNPLA2	ENSG00000177666.11	653.42360	1358.61210	-1.05600	23.62950	22.05850	HepG2	QKI
PNPLA2	ENSG00000177666.11	1637.25130	884.55340	0.88820	23.85950	22.04220	HepG2	HNRNPF
PNPLA2	ENSG00000177666.11	788.21890	1645.99650	-1.06230	22.98790	20.97010	HepG2	MSI2
PNPLA2	ENSG00000177666.11	1626.73100	962.80710	0.75660	22.01920	20.41600	HepG2	SLBP
PNPLA2	ENSG00000177666.11	929.47970	1577.67740	-0.76330	19.54480	18.44730	HepG2	SSB
PNPLA2	ENSG00000177666.11	811.04580	355.36440	1.19040	20.52910	18.15370	K562	TIA1
PNPLA2	ENSG00000177666.11	798.98460	371.32960	1.10540	18.86580	17.21180	K562	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 112 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PNPLA2 is not available on ENCORE database.

6 RBPs can affect the splicing of PNPLA2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PNPLA2	ENSG00000177666.11	chr11	+	819573	819905	818901	818958	821627	821860	-0.40100	0.00000	0.00019	excluded	HepG2	RBM22
SE	PNPLA2	ENSG00000177666.11	chr11	+	819573	819905	818901	818958	821627	821860	-0.51500	0.00000	0.00007	excluded	HepG2	SRSF1
RI	PNPLA2	ENSG00000177666.11	chr11	+	823693	824130	823693	823855	823997	824130	0.12500	0.00000	0.00000	included	K562	AQR
RI	PNPLA2	ENSG00000177666.11	chr11	+	823693	824130	823693	823855	823997	824130	0.05800	0.00005	0.00081	included	K562	AKAP8L
RI	PNPLA2	ENSG00000177666.11	chr11	+	823693	824130	823693	823855	823997	824130	0.12100	0.00013	0.00228	included	HepG2	RBM22
RI	PNPLA2	ENSG00000177666.11	chr11	+	823693	824130	823693	823855	823997	824130	0.08600	0.00024	0.00373	included	HepG2	TAF15
SE	PNPLA2	ENSG00000177666.11	chr11	+	823997	824130	823647	823855	824313	824437	-0.05100	0.00141	0.01630	excluded	K562	AQR
A5SS	PNPLA2	ENSG00000177666.11	chr11	+	823693	824130	823693	823855	824313	824436	-0.08400	0.00361	0.05512	shorter	K562	AQR
SE	PNPLA2	ENSG00000177666.11	chr11	+	823997	824130	823693	823855	824313	824436	-0.05500	0.00621	0.08969	excluded	HepG2	U2AF1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PNPLA2

General Information

Functions

Localization

Domains (AlphaFold: PNPLA2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PNPLA2 is not avaliable on ENCORE database.

46 proteins are bound to PNPLA2 RNA:

eCLIP assay for PNPLA2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PNPLA2 is not available on ENCORE database.

102 RBPs can affect the gene expression of PNPLA2 :

The Knockdown/knockout RNA-Seq assay for PNPLA2 is not available on ENCORE database.

6 RBPs can affect the splicing of PNPLA2 :

The Knockdown/knockout RNA-Seq assay for PNPLA2 is not avaliable on ENCORE database.