PMS1

General Information

Gene Name       : PMS1
Gene ID             : ENSG00000064933.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PMS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PMS1ENSG00000064933.1727.7422.1024.92ENCSR000AEF
HepG2PMS1ENSG00000064933.1715.4535.2225.34ENCSR985KAT
K562PMS1ENSG00000064933.1713.4717.6115.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PMS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PMS1 RNA is bound by 19 proteins.  







eCLIP assay for PMS1 is not avaliable on ENCORE database.





19 proteins are bound to PMS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2190718976190719026+3'-UTR,CDS3.312676.91872HepG2BCLAF1
chr2190719764190719882+3'-UTR,CDS,intron-Proximal5.220948.11807HepG2PRPF8
chr2190728549190728611+3'-UTR,CDS,intron-Distal4.086283.53509HepG2HLTF
chr2190738244190738292+3'-UTR,CDS4.131614.51739HepG2BCLAF1
chr2190728482190728604+3'-UTR,CDS,intron-Distal3.8651515.15192HepG2BCLAF1
chr2190719553190719605+3'-UTR,CDS3.565886.36847HepG2BCLAF1
chr2190671586190671710+3'-UTR,intron-Distal3.365056.59733K562KHSRP
chr2190728466190728501+3'-UTR,CDS,intron-Distal,intron-Proximal3.071165.65590HepG2AQR
chr2190728573190728690+3'-UTR,CDS,intron-Distal3.889775.97027HepG2GRWD1
chr2190728468190728542+3'-UTR,CDS,intron-Distal,intron-Proximal3.395833.43213K562UCHL5
chr2190671677190671730+3'-UTR,intron-Distal4.588804.20763HepG2U2AF2
chr2190718714190718779+3'-UTR,CDS3.153733.79741HepG2GRWD1
chr2190671598190671681+3'-UTR,intron-Distal4.056723.22073HepG2KHSRP
chr2190718759190718765+3'-UTR,CDS4.533783.89826HepG2BCLAF1
chr2190732583190732647+3'-UTR,CDS,intron-Distal3.384415.30777HepG2PPIG
chr2190728884190728939+3'-UTR,CDS,intron-Distal4.551607.97334HepG2BCLAF1
chr2190719746190719913+3'-UTR,CDS,intron-Proximal3.925967.40171K562PRPF8
chr2190656515190656565+3'-UTR,5'-UTR,CDS,intron-Proximal3.414946.60593HepG2NCBP2
chr2190719693190719769+3'-UTR,CDS3.8222220.51091HepG2AQR
chr2190728475190728568+3'-UTR,CDS,intron-Distal3.221196.82013HepG2PPIG
chr2190719228190719264+3'-UTR,CDS4.559807.37756HepG2AQR
chr2190719779190719873+3'-UTR,CDS,intron-Proximal4.202103.77023K562ZNF622
chr2190656623190656668+5'-UTR,CDS,intron-Proximal3.120425.69345HepG2BCLAF1
chr2190649486190649533+5'-UTR,intron-Distal,intron-Proximal4.533965.02084HepG2HNRNPM
chr2190649223190649253+5'-UTR3.1877810.23184HepG2NCBP2
chr2190649219190649317+5'-UTR,intron-Proximal4.6961611.90236HepG2PRPF4
chr2190656608190656669+5'-UTR,CDS,intron-Proximal3.438424.27261HepG2GRWD1
chr2190682875190682906+5'-UTR,CDS4.080345.79432HepG2BCLAF1
chr2190649253190649274+5'-UTR3.8240215.94654HepG2NCBP2
chr2190660494190660557+5'-UTR,CDS,intron-Distal,intron-Proximal4.4136311.99763HepG2BCLAF1
chr2190649221190649320+5'-UTR,intron-Proximal3.694924.46401K562DDX3X
chr2190649289190649334+5'-UTR,intron-Proximal4.6784619.13432HepG2NCBP2
chr2190682780190682796+5'-UTR,CDS3.484023.28366HepG2BCLAF1
chr2190670388190670479+CDS,intron-Distal3.3832611.17783HepG2BCLAF1
chr2190722327190722375+intron-Distal,intron-Proximal6.4726815.62699K562PTBP1
chr2190714221190714290+intron-Distal3.160883.06005HepG2QKI
chr2190731797190731841+intron-Distal4.066483.45317HepG2HNRNPL
chr2190713832190713875+intron-Distal4.788088.31636HepG2U2AF2
chr2190731841190731927+intron-Distal3.290165.73989HepG2HNRNPL
chr2190691958190692046+intron-Distal5.037527.62903HepG2QKI
chr2190660780190660838+intron-Distal4.399493.78849HepG2TIAL1
chr2190730488190730533+intron-Distal5.0485214.28056HepG2QKI
chr2190730471190730531+intron-Distal3.622363.55754HepG2U2AF2
chr2190694172190694255+intron-Distal4.111673.27829HepG2MATR3
chr2190730387190730425+intron-Distal4.198484.30850HepG2QKI
chr2190730554190730589+intron-Distal4.614805.20135HepG2QKI
chr2190722384190722422+intron-Distal5.086517.79427HepG2PTBP1
chr2190722315190722382+intron-Distal,intron-Proximal3.7669923.62478HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PMS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PMS1 is not available on ENCORE database.

  • 91 RBPs can affect the levels of PMS1.  








The Knockdown/knockout RNA-Seq assay for PMS1 is not available on ENCORE database.





91 RBPs can affect the gene expression of PMS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PMS1ENSG00000064933.121003.56220836.692500.262302.519901.93480HepG2ACO1
PMS1ENSG00000064933.12981.324301244.23900-0.342503.506802.75050HepG2AUH
PMS1ENSG00000064933.12822.185801073.40680-0.384702.939102.32480HepG2BOP1
PMS1ENSG00000064933.12634.49510836.49630-0.398804.692003.86990HepG2CKAP4
PMS1ENSG00000064933.121060.841701407.75050-0.408207.252506.13560HepG2DAZAP1
PMS1ENSG00000064933.121075.00220809.842000.408503.373902.62990HepG2DDX21
PMS1ENSG00000064933.12445.71810799.62370-0.843207.670006.68960HepG2DDX6
PMS1ENSG00000064933.12614.69640755.62010-0.297802.289701.64450HepG2DNAJC21
PMS1ENSG00000064933.12518.65340748.94430-0.530107.255206.26850HepG2DNAJC2
PMS1ENSG00000064933.121144.63480827.009600.468802.600501.93170HepG2EIF4B
PMS1ENSG00000064933.12659.12400817.58530-0.310802.081301.35830HepG2EWSR1
PMS1ENSG00000064933.12663.50040498.438000.412602.920102.11360HepG2FUBP3
PMS1ENSG00000064933.12800.590801117.08690-0.480603.468902.75820HepG2GPKOW
PMS1ENSG00000064933.12620.15940798.79310-0.365203.696202.57870HepG2HDGF
PMS1ENSG00000064933.12553.60210848.53860-0.616105.840004.86090HepG2HNRNPC
PMS1ENSG00000064933.12649.134101020.98950-0.6534010.499809.21880HepG2HNRNPF
PMS1ENSG00000064933.12957.659301282.39680-0.421307.116506.08050HepG2HNRNPL
PMS1ENSG00000064933.12685.032401005.38780-0.553506.148105.11010HepG2IGF2BP1
PMS1ENSG00000064933.12599.88950764.83290-0.350403.614502.44780HepG2KIF1C
PMS1ENSG00000064933.121074.693501408.10660-0.389802.275701.52940HepG2LARP4
PMS1ENSG00000064933.12949.18570756.819800.326602.445401.68280HepG2MSI2
PMS1ENSG00000064933.12960.97180769.788300.319903.095502.45940HepG2PCBP1
PMS1ENSG00000064933.12580.06090751.82520-0.374203.271902.47630HepG2PPIL4
PMS1ENSG00000064933.12969.73990783.281400.308002.955302.39350HepG2PTBP1
PMS1ENSG00000064933.12586.847101332.48270-1.1831024.5976023.06180HepG2PUF60
PMS1ENSG00000064933.121026.791101413.43830-0.461105.696004.74560HepG2PUM2
PMS1ENSG00000064933.12710.77800852.22350-0.261802.264701.69430HepG2PUS1
PMS1ENSG00000064933.12658.686301029.19600-0.643903.327802.55770HepG2RAVER1
PMS1ENSG00000064933.121446.631101193.982700.276802.587602.08220HepG2RBM22
PMS1ENSG00000064933.121065.39030871.722800.289302.557402.03440HepG2NELFE
PMS1ENSG00000064933.121042.70860811.880800.360903.782703.07710HepG2RECQL
PMS1ENSG00000064933.12789.875201099.78680-0.477504.403303.57160HepG2RPLP0
PMS1ENSG00000064933.12815.444501165.36900-0.515103.247102.51570HepG2SF3A3
PMS1ENSG00000064933.12743.535101055.18790-0.505004.506403.62260HepG2SF3B1
PMS1ENSG00000064933.121044.056801277.54670-0.291203.710302.91780HepG2SLBP
PMS1ENSG00000064933.12591.857201178.93820-0.994203.443901.94390HepG2SNRNP200
PMS1ENSG00000064933.121053.36400851.210300.307302.916802.43480HepG2SRSF1
PMS1ENSG00000064933.121040.246601315.57620-0.338803.323702.64880HepG2SRSF5
PMS1ENSG00000064933.12567.724901003.07250-0.8212015.9304014.49900HepG2SRSF7
PMS1ENSG00000064933.121372.600901170.904600.229202.355801.87430HepG2SSB
PMS1ENSG00000064933.121106.31470765.086800.532006.914406.09790HepG2TAF15
PMS1ENSG00000064933.12536.03800819.06690-0.611606.933206.20730HepG2TIAL1
PMS1ENSG00000064933.121044.211101301.70240-0.318002.719301.85370HepG2TUFM
PMS1ENSG00000064933.12878.53720559.707400.650302.980002.19480HepG2UCHL5
PMS1ENSG00000064933.12752.353801033.50080-0.458106.362905.37550HepG2UPF1
PMS1ENSG00000064933.121248.44550997.809500.323203.548502.88590HepG2UTP3
PMS1ENSG00000064933.12800.370401136.65780-0.506108.996808.15550HepG2ZNF622
PMS1ENSG00000064933.12392.35100606.54180-0.628506.614405.79180K562AGGF1
PMS1ENSG00000064933.12488.02550666.49160-0.449603.256102.16820K562AKAP8
PMS1ENSG00000064933.12387.23030631.13270-0.704806.569405.53100K562AKAP8L
PMS1ENSG00000064933.12473.44780953.91290-1.0107013.7291012.56380K562AQR
PMS1ENSG00000064933.12527.07480662.20730-0.329302.336401.50350K562ATP5C1
PMS1ENSG00000064933.12481.39160593.21780-0.301402.157301.30780K562BCLAF1
PMS1ENSG00000064933.12458.08340614.67930-0.424202.524601.69300K562BOP1
PMS1ENSG00000064933.12509.51590700.97710-0.460202.911301.45050K562BUD13
PMS1ENSG00000064933.12772.271401173.92290-0.604203.206802.04940K562CNOT7
PMS1ENSG00000064933.12445.18040653.57270-0.554004.810903.78110K562CPSF6
PMS1ENSG00000064933.12498.05250637.30990-0.355702.886001.64700K562DDX21
PMS1ENSG00000064933.12233.67590506.65930-1.116507.657406.07140K562EFTUD2
PMS1ENSG00000064933.12331.39090448.99770-0.438202.435501.31450K562EIF2S1
PMS1ENSG00000064933.12577.29190741.41090-0.361003.052202.30330K562EIF2S2
PMS1ENSG00000064933.12358.83680542.59500-0.596503.282402.14810K562EIF3D
PMS1ENSG00000064933.12317.29660427.09550-0.428702.531801.74690K562EIF4A3
PMS1ENSG00000064933.12241.38550372.79760-0.627104.230902.58720K562EWSR1
PMS1ENSG00000064933.12540.22550723.40100-0.421202.999802.11460K562FIP1L1
PMS1ENSG00000064933.12442.25210665.00980-0.588504.755203.63160K562FMR1
PMS1ENSG00000064933.12410.02520563.66230-0.459102.811501.88980K562FTO
PMS1ENSG00000064933.12670.02300497.886400.428302.239701.61310K562G3BP2
PMS1ENSG00000064933.12365.39290623.99480-0.772107.699706.37020K562GPKOW
PMS1ENSG00000064933.12654.65360988.01470-0.593806.341305.18940K562GRSF1
PMS1ENSG00000064933.12230.66840525.77240-1.1886014.1371012.87040K562HNRNPC
PMS1ENSG00000064933.12347.07220469.46130-0.435802.528501.44500K562HNRNPF
PMS1ENSG00000064933.12695.62340903.83670-0.377803.017501.90880K562HNRNPL
PMS1ENSG00000064933.12374.85580522.71190-0.479702.486201.53060K562IGF2BP2
PMS1ENSG00000064933.12546.21130669.79480-0.294302.099901.39170K562KIF1C
PMS1ENSG00000064933.12370.02350533.13800-0.526903.211001.60600K562LIN28B
PMS1ENSG00000064933.12468.07300641.15420-0.453902.676601.62240K562MAK16
PMS1ENSG00000064933.12462.56970609.09120-0.397002.484501.65870K562METAP2
PMS1ENSG00000064933.121037.593701348.86280-0.378502.451401.39030K562MSI2
PMS1ENSG00000064933.12373.22130525.93260-0.494802.346601.55000K562NAA15
PMS1ENSG00000064933.12622.96660745.55950-0.259202.268201.58670K562NSUN2
PMS1ENSG00000064933.12765.179901127.79410-0.559603.066001.75930K562PABPC1
PMS1ENSG00000064933.12329.49500679.38850-1.044002.699401.72400K562PABPN1
PMS1ENSG00000064933.12590.14580821.18590-0.476603.826402.83940K562PPIG
PMS1ENSG00000064933.12238.37910493.03490-1.048409.196407.82450K562PRPF8
PMS1ENSG00000064933.12325.09000471.39500-0.536103.249102.25630K562PSIP1
PMS1ENSG00000064933.12867.011901380.70790-0.671306.325505.09320K562PUF60
PMS1ENSG00000064933.121132.237401438.95070-0.345802.257101.38850K562PUM2
PMS1ENSG00000064933.12340.48980625.92130-0.878408.478807.57630K562PUS1
PMS1ENSG00000064933.12372.97640609.85700-0.709406.776905.87470K562RBM15
PMS1ENSG00000064933.12383.54150511.86240-0.416402.577301.76840K562RBM22
PMS1ENSG00000064933.12286.60210430.01440-0.585303.915102.73480K562RCC2
PMS1ENSG00000064933.12333.76810502.29600-0.589703.245602.36020K562RPS19
PMS1ENSG00000064933.12652.293101069.25870-0.713004.452202.42060K562SBDS
PMS1ENSG00000064933.12495.24610735.59630-0.570806.559105.35030K562SF3A3
PMS1ENSG00000064933.12356.22900593.46390-0.736405.559304.14690K562SF3B1
PMS1ENSG00000064933.12728.170301098.25170-0.592903.565901.56130K562SMN1
PMS1ENSG00000064933.12385.12290523.27540-0.442302.948202.22130K562SRSF1
PMS1ENSG00000064933.12344.85930494.17810-0.519003.489802.28650K562SRSF5
PMS1ENSG00000064933.12314.68660529.60280-0.751006.486405.36160K562TARDBP
PMS1ENSG00000064933.12376.40150510.85800-0.440602.979102.12560K562TIA1
PMS1ENSG00000064933.12255.23050453.41190-0.829006.158304.70800K562TIAL1
PMS1ENSG00000064933.12354.24820501.27060-0.500803.155001.97680K562TRA2A
PMS1ENSG00000064933.12325.35800481.61070-0.565803.887202.72950K562TRIM56
PMS1ENSG00000064933.12585.34820821.66390-0.489305.511603.70000K562TROVE2
PMS1ENSG00000064933.12319.01680505.31560-0.663604.494403.16690K562UCHL5
PMS1ENSG00000064933.12511.33120790.52820-0.628607.310706.20880K562UPF1
PMS1ENSG00000064933.12406.13100634.60800-0.643902.631001.37820K562UTP18
PMS1ENSG00000064933.12448.78680676.43710-0.591905.704404.42630K562WDR3
PMS1ENSG00000064933.12581.95910703.36790-0.273402.279201.50440K562WDR43
PMS1ENSG00000064933.12760.543901074.64390-0.498804.899103.69900K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PMS1 is not available on ENCORE database.





13 RBPs can affect the splicing of PMS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPMS1ENSG00000064933.12chr2+190708689190708806190682742190682906190717380190717503-0.103000.001190.09786excludedHepG2DDX59
SEPMS1ENSG00000064933.12chr2+190708689190708806190682742190682906190717380190717503-0.092000.001610.02102excludedHepG2U2AF2
SEPMS1ENSG00000064933.12chr2+190670377190670480190660494190660677190682742190682906-0.168000.000750.00960excludedK562AQR
SEPMS1ENSG00000064933.12chr2+190660494190660677190656515190656667190670377190671780-0.107000.003820.05050excludedK562PUS1
SEPMS1ENSG00000064933.12chr2+190660494190660677190656515190656667190670377190671780-0.076000.000060.02184excludedK562SBDS
SEPMS1ENSG00000064933.12chr2+190728468190728954190718964190719854190732524190732655-0.179000.000010.00034excludedHepG2SRSF1
SEPMS1ENSG00000064933.12chr2+190660494190660677190656515190656667190670377190671780-0.059000.000550.04406excludedK562HNRNPUL1
SEPMS1ENSG00000064933.12chr2+190708689190708806190682742190682906190717380190717503-0.099000.006760.08762excludedK562HNRNPC
A3SSPMS1ENSG00000064933.12chr2+1906703601906704801906703771906704801906604941906606770.119000.000360.00279longerK562AQR
MXEPMS1ENSG00000064933.12chr2+1907189641907198541907284681907287001907186641907188081907325241907326550.106000.002350.041201includedHepG2U2AF1
MXEPMS1ENSG00000064933.12chr2+1907189641907198541907284681907289541907186641907188081907325241907326550.264000.000090.002841includedHepG2U2AF1
MXEPMS1ENSG00000064933.12chr2+190660494190660677190682742190682906190656515190656667190708689190708806-0.282000.000010.000442includedK562DROSHA
MXEPMS1ENSG00000064933.12chr2+190660494190660677190670377190670480190656515190656667190682742190682906-0.072000.000000.000122includedK562DROSHA
MXEPMS1ENSG00000064933.12chr2+190660494190660677190682742190682906190656515190656667190708689190708806-0.192000.000590.095572includedK562HNRNPA1
MXEPMS1ENSG00000064933.12chr2+1906604741906606771906703451906704801906565151906566671906827421906829060.165000.000590.005721includedK562AQR
MXEPMS1ENSG00000064933.12chr2+1906604741906606771906703771906704801906565151906566671906827421906829060.159000.000400.004121includedK562AQR
MXEPMS1ENSG00000064933.12chr2+1906604941906606771906703771906704801906565151906566671906827421906829060.240000.000080.015851includedK562XRCC6
MXEPMS1ENSG00000064933.12chr2+1906604941906606771906703771906704801906565151906566671906827421906829060.143000.000130.012981includedHepG2DROSHA
MXEPMS1ENSG00000064933.12chr2+190660494190660677190670377190670480190656515190656667190682742190682906-0.051000.000030.001162includedHepG2HNRNPUL1
MXEPMS1ENSG00000064933.12chr2+190656515190656667190660494190660677190649214190649319190682742190682906-0.230000.002930.059492includedHepG2HNRNPK
MXEPMS1ENSG00000064933.12chr2+190660494190660677190682742190682906190656515190656667190708689190708806-0.254000.000000.000322includedK562HNRNPUL1
MXEPMS1ENSG00000064933.12chr2+190660494190660677190670377190670480190656515190656667190682742190682906-0.088000.000000.000022includedK562HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PMS1 is not avaliable on ENCORE database.