PAXBP1

General Information

Gene Name : PAXBP1
Gene ID : ENSG00000159086.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PAXBP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PAXBP1	ENSG00000159086.14	29.88	25.12	27.50	ENCSR000AEF
HepG2	PAXBP1	ENSG00000159086.14	18.66	38.35	28.51	ENCSR985KAT
K562	PAXBP1	ENSG00000159086.14	32.60	33.85	33.23	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PAXBP1 is not avaliable on ENCORE database.

Proteins bound to RNA

PAXBP1 RNA is bound by 30 proteins.

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eCLIP assay for PAXBP1 is not avaliable on ENCORE database.

30 proteins are bound to PAXBP1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr21	34136683	34136773	-	CDS,intron-Distal	5.26542	34.41475	K562	ZNF622
chr21	34133387	34133474	-	CDS,intron-Distal,intron-Proximal	4.79176	29.85421	K562	UCHL5
chr21	34132220	34132305	-	CDS,intron-Distal	3.77806	27.92897	K562	UCHL5
chr21	34131863	34131947	-	intron-Distal	3.15817	27.01621	K562	ZNF622
chr21	34143772	34143852	-	CDS,intron-Distal	4.27731	25.41505	K562	ZNF622
chr21	34123255	34123318	-	3'-UTR,CDS,intron-Distal	3.47055	21.39430	K562	ZNF622
chr21	34143857	34143931	-	CDS,intron-Distal	4.49433	21.21700	K562	ZNF622
chr21	34133383	34133469	-	CDS,intron-Distal	3.68753	20.78819	K562	ZNF622
chr21	34132129	34132306	-	CDS,intron-Distal,intron-Proximal	3.56059	20.25010	K562	DDX24
chr21	34143853	34143946	-	CDS,intron-Distal	5.58079	19.17337	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 174 entries

eCLIP assay for PAXBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PAXBP1 is not available on ENCORE database.
91 RBPs can affect the levels of PAXBP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PAXBP1 is not available on ENCORE database.

91 RBPs can affect the gene expression of PAXBP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PAXBP1	ENSG00000159086.10	2109.21560	1041.22260	1.01830	30.66190	29.06580	HepG2	TAF15
PAXBP1	ENSG00000159086.10	2079.39240	1158.27410	0.84410	26.03290	24.90400	HepG2	SRSF1
PAXBP1	ENSG00000159086.10	6100.11010	3174.71430	0.94210	19.84720	18.41990	K562	PUS1
PAXBP1	ENSG00000159086.10	6320.57410	3662.74910	0.78700	14.95450	13.74200	K562	AQR
PAXBP1	ENSG00000159086.10	1708.02520	1104.88240	0.62830	13.62800	12.41810	HepG2	RECQL
PAXBP1	ENSG00000159086.10	1427.33320	942.35510	0.59890	12.52620	11.50060	HepG2	SRSF9
PAXBP1	ENSG00000159086.10	4410.36350	3093.32130	0.51160	10.63780	9.50030	K562	RBM15
PAXBP1	ENSG00000159086.10	1700.16210	1186.20940	0.51920	9.34100	8.45260	HepG2	NELFE
PAXBP1	ENSG00000159086.10	8298.89400	5832.59760	0.50870	10.08530	8.28580	K562	CELF1
PAXBP1	ENSG00000159086.10	3332.27320	2508.18160	0.40980	9.67490	8.19730	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PAXBP1 is not available on ENCORE database.

20 RBPs can affect the splicing of PAXBP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PAXBP1	ENSG00000159086.10	chr21	-	34123227	34123343	34120809	34121009	34123429	34123529	-0.31700	0.00000	0.00000	excluded	K562	SF3B4
SE	PAXBP1	ENSG00000159086.10	chr21	-	34115558	34115625	34110607	34110630	34115988	34116065	-0.08300	0.00000	0.00006	excluded	K562	AQR
SE	PAXBP1	ENSG00000159086.10	chr21	-	34123227	34123343	34120809	34121009	34123429	34123574	-0.19200	0.00000	0.00000	excluded	K562	AQR
SE	PAXBP1	ENSG00000159086.10	chr21	-	34123227	34123343	34120809	34121009	34123429	34123529	-0.19900	0.00000	0.00000	excluded	HepG2	SF3A3
A3SS	PAXBP1	ENSG00000159086.10	chr21	-	34117884	34118087	34117884	34118029	34120809	34121009	0.05700	0.00000	0.00000	longer	K562	AQR
A5SS	PAXBP1	ENSG00000159086.10	chr21	-	34127523	34127664	34127540	34127664	34123429	34123529	0.17000	0.00000	0.00018	longer	K562	PUS1
A5SS	PAXBP1	ENSG00000159086.10	chr21	-	34127523	34127664	34127540	34127664	34123429	34123529	0.33300	0.00000	0.00000	longer	K562	HNRNPC
A5SS	PAXBP1	ENSG00000159086.10	chr21	-	34127523	34127664	34127540	34127664	34123429	34123529	0.17400	0.00000	0.00091	longer	K562	RBM15
A5SS	PAXBP1	ENSG00000159086.10	chr21	-	34127523	34127664	34127540	34127664	34123429	34123529	0.19200	0.00000	0.00009	longer	K562	AKAP8L
A5SS	PAXBP1	ENSG00000159086.10	chr21	-	34127523	34127664	34127540	34127664	34123429	34123529	0.35600	0.00001	0.00453	longer	HepG2	HNRNPC

Showing 1 to 10 of 30 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PAXBP1

General Information

Functions

Localization

Domains (AlphaFold: PAXBP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PAXBP1 is not avaliable on ENCORE database.

30 proteins are bound to PAXBP1 RNA:

eCLIP assay for PAXBP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PAXBP1 is not available on ENCORE database.

91 RBPs can affect the gene expression of PAXBP1 :

The Knockdown/knockout RNA-Seq assay for PAXBP1 is not available on ENCORE database.

20 RBPs can affect the splicing of PAXBP1 :

The Knockdown/knockout RNA-Seq assay for PAXBP1 is not avaliable on ENCORE database.