PATZ1

General Information

Gene Name       : PATZ1
Gene ID             : ENSG00000100105.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PATZ1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PATZ1ENSG00000100105.179.0111.7810.39ENCSR000AEF
HepG2PATZ1ENSG00000100105.1725.1320.7622.95ENCSR985KAT
K562PATZ1ENSG00000100105.174.203.643.92ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PATZ1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PATZ1 RNA is bound by 23 proteins.  







eCLIP assay for PATZ1 is not avaliable on ENCORE database.





23 proteins are bound to PATZ1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223172189331722000-3'-UTR,intron-Distal3.031604.14504HepG2PABPN1
chr223172281131722951-3'-UTR,CDS,intron-Distal5.7492411.59434HepG2GRSF1
chr223172184731721916-3'-UTR,intron-Distal3.549034.17167HepG2ZC3H11A
chr223172188131722017-3'-UTR,intron-Distal5.3985114.31811HepG2DDX55
chr223172190131721975-3'-UTR,intron-Distal6.2854611.93389K562PABPC4
chr223172189031721993-3'-UTR,intron-Distal4.627454.89487HepG2LARP4
chr223172242231722508-3'-UTR,intron-Distal3.941113.38192HepG2PCBP2
chr223172269731722761-3'-UTR,intron-Distal4.293384.62831HepG2PCBP2
chr223174189731741948-5'-UTR,intron-Distal4.296926.29084HepG2RBM15
chr223174206931742113-5'-UTR,intron-Distal3.475296.58465HepG2RBM15
chr223174173031741808-5'-UTR,intron-Distal,intron-Proximal3.339703.55700HepG2LARP4
chr223174155531741659-5'-UTR,CDS,intron-Distal3.875666.73715HepG2PRPF4
chr223174172131741755-5'-UTR,intron-Distal3.859694.22136HepG2RBM15
chr223174172831741817-5'-UTR,intron-Distal,intron-Proximal3.1249210.67683HepG2NKRF
chr223174156931741615-5'-UTR,CDS,intron-Distal3.709923.01994HepG2GTF2F1
chr223174160431741626-5'-UTR,intron-Distal3.013063.40572HepG2DDX3X
chr223174173931741830-5'-UTR,intron-Distal,intron-Proximal3.110415.66863HepG2PRPF4
chr223174175531741845-5'-UTR,intron-Distal,intron-Proximal5.017567.88170HepG2RBM15
chr223174188131741946-5'-UTR,intron-Distal3.748706.12435HepG2SLTM
chr223174158531741606-5'-UTR,CDS,intron-Distal3.878914.66211HepG2XRN2
chr223174186231741915-5'-UTR,intron-Distal3.3565211.57368HepG2DDX3X
chr223174181731741855-5'-UTR,intron-Distal,intron-Proximal4.668995.64992HepG2NKRF
chr223174186931741994-5'-UTR,intron-Distal3.232456.54781HepG2NKRF
chr223174173031741812-5'-UTR,intron-Distal,intron-Proximal4.2401811.48367HepG2SLTM
chr223174157631741656-5'-UTR,CDS,intron-Distal4.108828.58773HepG2RBM15
chr223174187131741945-5'-UTR,intron-Distal4.210064.36329HepG2PRPF4
chr223174102231741048-CDS,intron-Distal4.672494.34093HepG2RBM15
chr223173881431738907-CDS,intron-Distal,intron-Proximal3.311409.78963HepG2PRPF8
chr223173885831738948-CDS,intron-Distal,intron-Proximal3.318434.24993HepG2PPIG
chr223174027531740341-CDS,intron-Distal3.401466.87008HepG2PRPF8
chr223173892131739002-CDS,intron-Distal,intron-Proximal3.002167.46666HepG2BUD13
chr223174042431740492-CDS,intron-Distal3.706843.66523HepG2YBX3
chr223173654831736655-intron-Distal,intron-Proximal3.160493.31721HepG2CSTF2
chr223172866431728746-intron-Distal4.502735.01506HepG2HLTF
chr223172410731724169-intron-Distal5.3508910.47230HepG2HNRNPM
chr223173099931731092-intron-Distal5.7485312.04483HepG2HNRNPM
chr223173859131738685-intron-Distal3.717834.74917HepG2PCBP2
chr223173092631730999-intron-Distal5.6105811.26125HepG2HNRNPM
chr223172432531724382-intron-Distal4.558415.02084HepG2HNRNPM
chr223173042831730536-intron-Distal4.762054.22343HepG2XPO5
chr223172331131723371-intron-Distal3.842513.31322HepG2SF3B4
chr223173083631730890-intron-Distal3.943835.95943HepG2HNRNPM
chr223173109231731123-intron-Distal4.116153.97018HepG2HNRNPM
chr223173869431738760-intron-Distal5.072636.51490HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PATZ1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PATZ1 is not available on ENCORE database.

  • 51 RBPs can affect the levels of PATZ1.  








The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.





51 RBPs can affect the gene expression of PATZ1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PATZ1ENSG00000100105.13592.74480786.50740-0.408002.909601.81510HepG2AATF
PATZ1ENSG00000100105.13900.203701142.21150-0.343504.225703.50430HepG2ACO1
PATZ1ENSG00000100105.131127.60790833.379900.436103.498202.38900HepG2ADAR
PATZ1ENSG00000100105.131287.935601699.09270-0.399702.638102.11790HepG2AKAP1
PATZ1ENSG00000100105.131228.429901576.21340-0.359604.345003.51900HepG2AUH
PATZ1ENSG00000100105.13696.22910873.74470-0.327602.367701.65030HepG2CALR
PATZ1ENSG00000100105.13645.80830867.60100-0.425903.327602.58850HepG2DDX21
PATZ1ENSG00000100105.13619.97160913.29880-0.558904.288403.34790HepG2DDX55
PATZ1ENSG00000100105.131050.548601398.38790-0.412602.704502.09410HepG2DDX6
PATZ1ENSG00000100105.13952.038101343.92310-0.497404.083203.37220HepG2EIF2S1
PATZ1ENSG00000100105.131015.789301304.85760-0.361304.409103.39480HepG2EIF4G1
PATZ1ENSG00000100105.13625.96170826.86040-0.401603.085601.88410HepG2FASTKD2
PATZ1ENSG00000100105.13962.265901245.41540-0.372102.237601.54140HepG2FIP1L1
PATZ1ENSG00000100105.13696.352801017.96690-0.547803.334102.10580HepG2FUS
PATZ1ENSG00000100105.131015.350201215.55210-0.259602.360101.48830HepG2HNRNPA2B1
PATZ1ENSG00000100105.13825.414301507.69630-0.8692010.115108.96730HepG2MATR3
PATZ1ENSG00000100105.13703.583001007.77750-0.518405.387704.28930HepG2MSI2
PATZ1ENSG00000100105.131008.027801311.55830-0.379704.147703.21380HepG2NOL12
PATZ1ENSG00000100105.13481.99460908.49440-0.914506.214304.84910HepG2PABPC1
PATZ1ENSG00000100105.13938.417501373.92550-0.550004.897803.94740HepG2PABPC4
PATZ1ENSG00000100105.131066.286401407.48770-0.400505.710604.88830HepG2PCBP1
PATZ1ENSG00000100105.131002.429601432.16580-0.514708.308407.46580HepG2PTBP1
PATZ1ENSG00000100105.131010.525701328.05930-0.394204.154403.34100HepG2PUM2
PATZ1ENSG00000100105.131289.744701551.08280-0.266202.392301.80430HepG2QKI
PATZ1ENSG00000100105.13564.23430929.67550-0.720403.990203.14970HepG2RAVER1
PATZ1ENSG00000100105.131010.137801244.97210-0.301602.583701.75350HepG2RBM15
PATZ1ENSG00000100105.131051.894701407.70280-0.420404.275903.45260HepG2RBM25
PATZ1ENSG00000100105.131208.213601593.86770-0.399705.691304.95900HepG2NELFE
PATZ1ENSG00000100105.131209.705501491.07940-0.301703.465902.81390HepG2SF3B4
PATZ1ENSG00000100105.131128.606901556.36000-0.463607.742007.04340HepG2SRSF1
PATZ1ENSG00000100105.13585.23260860.09650-0.555503.604202.44740HepG2SRSF3
PATZ1ENSG00000100105.131167.05230974.423300.260102.331901.68870HepG2SRSF7
PATZ1ENSG00000100105.13915.037401266.17830-0.468607.467706.64120HepG2SRSF9
PATZ1ENSG00000100105.131227.909901405.83960-0.195201.959401.41930HepG2SUCLG1
PATZ1ENSG00000100105.13720.06070909.11990-0.336401.949201.36750HepG2SUPV3L1
PATZ1ENSG00000100105.131137.396701398.90580-0.298603.024902.44240HepG2TAF15
PATZ1ENSG00000100105.13645.18420909.51600-0.495405.121004.48390HepG2TIAL1
PATZ1ENSG00000100105.13683.35770917.75640-0.425505.068204.35120HepG2TRIM56
PATZ1ENSG00000100105.13856.487701294.62510-0.596004.787203.66970HepG2UBE2L3
PATZ1ENSG00000100105.13366.00330537.00750-0.553103.930303.02560HepG2UCHL5
PATZ1ENSG00000100105.13829.572101084.04170-0.386004.706403.83530HepG2UPF1
PATZ1ENSG00000100105.13790.725401192.23670-0.5924012.1869011.24260HepG2ZNF622
PATZ1ENSG00000100105.13492.89710261.642000.9136011.3876010.16280K562DDX47
PATZ1ENSG00000100105.13102.25640186.97510-0.870703.995402.42560K562EEF2
PATZ1ENSG00000100105.13307.17940144.021701.092702.954101.91200K562EIF3A
PATZ1ENSG00000100105.13174.3072083.986201.053305.918404.76780K562EIF3G
PATZ1ENSG00000100105.13644.29140354.323400.8625012.6123010.67820K562EIF4G2
PATZ1ENSG00000100105.13149.28530248.90510-0.737503.583402.63680K562PCBP3
PATZ1ENSG00000100105.13123.08630190.90800-0.633202.265301.54040K562POLR2G
PATZ1ENSG00000100105.13262.18080179.022400.550302.082901.37860K562RPS19
PATZ1ENSG00000100105.1381.69050150.39200-0.880503.229301.53000K562SERBP1
PATZ1ENSG00000100105.13172.58260114.537100.591402.239101.59490K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PATZ1 is not available on ENCORE database.





8 RBPs can affect the splicing of PATZ1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPATZ1ENSG00000100105.13chr22-317247723172484531721794317232953173167731731849-0.131000.000170.01568excludedHepG2RBM22
SEPATZ1ENSG00000100105.13chr22-3173757731737669317316773173184931738882317389460.102000.000030.00521includedHepG2TBRG4
SEPATZ1ENSG00000100105.13chr22-3172477231724910317217893172329531731677317318490.305000.003140.03183includedK562AQR
SEPATZ1ENSG00000100105.13chr22-3173757731737669317316773173184931738882317389460.255000.000000.00001includedHepG2SUPV3L1
SEPATZ1ENSG00000100105.13chr22-317247723172484531721794317232953173167731731849-0.096000.002190.08658excludedHepG2PCBP1
SEPATZ1ENSG00000100105.13chr22-3173757731737669317316773173184931738882317389460.132000.000010.00712includedHepG2NOL12
SEPATZ1ENSG00000100105.13chr22-3172477231724910317217893172329531731677317318490.258000.000170.04463includedHepG2EIF3D
SEPATZ1ENSG00000100105.13chr22-3172477231724845317217943172329531731677317318490.240000.000550.09690includedHepG2FUS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PATZ1 is not avaliable on ENCORE database.