OGFOD1

General Information

Gene Name : OGFOD1
Gene ID : ENSG00000087263.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: OGFOD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	OGFOD1	ENSG00000087263.16	46.92	41.23	44.08	ENCSR000AEF
HepG2	OGFOD1	ENSG00000087263.16	54.17	79.76	66.97	ENCSR985KAT
K562	OGFOD1	ENSG00000087263.16	65.03	59.78	62.41	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for OGFOD1 is not avaliable on ENCORE database.

Proteins bound to RNA

OGFOD1 RNA is bound by 19 proteins.

CanvasJS.com

eCLIP assay for OGFOD1 is not avaliable on ENCORE database.

19 proteins are bound to OGFOD1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	56511063	56511105	+	3'-UTR	5.53349	16.54688	K562	PABPC4
chr16	56485632	56485733	+	CDS,intron-Distal,intron-Proximal	3.88912	12.75073	HepG2	PRPF8
chr16	56490109	56490239	+	intron-Distal	3.73380	11.04476	HepG2	PTBP1
chr16	56511142	56511242	+	3'-UTR	4.70634	10.92855	K562	UPF1
chr16	56490113	56490280	+	intron-Distal	5.19861	9.83650	K562	MATR3
chr16	56485476	56485682	+	5'-UTR,CDS,intron-Distal,intron-Proximal	3.13015	9.54151	K562	ZNF622
chr16	56511242	56511349	+	3'-UTR	3.41233	8.77718	K562	UPF1
chr16	56492172	56492260	+	intron-Distal	3.74837	8.28561	HepG2	QKI
chr16	56504511	56504682	+	3'-UTR,CDS	3.49134	7.83567	HepG2	BCLAF1
chr16	56487327	56487529	+	intron-Distal,intron-Proximal	4.46470	7.64759	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for OGFOD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for OGFOD1 is not available on ENCORE database.
78 RBPs can affect the levels of OGFOD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for OGFOD1 is not available on ENCORE database.

78 RBPs can affect the gene expression of OGFOD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
OGFOD1	ENSG00000087263.12	2614.09400	1543.58960	0.75990	24.20120	23.10440	HepG2	SRSF1
OGFOD1	ENSG00000087263.12	991.03680	2107.21840	-1.08830	20.83950	19.17340	HepG2	CPSF6
OGFOD1	ENSG00000087263.12	765.37110	1280.09090	-0.74200	19.03520	17.30740	HepG2	ILF2
OGFOD1	ENSG00000087263.12	1099.62730	1696.10820	-0.62520	16.34890	14.83080	HepG2	HNRNPL
OGFOD1	ENSG00000087263.12	680.40340	1352.27690	-0.99090	14.28170	12.68160	HepG2	CIRBP
OGFOD1	ENSG00000087263.12	1459.21650	2287.11790	-0.64830	12.84840	11.72290	K562	AGGF1
OGFOD1	ENSG00000087263.12	1394.08690	2360.45840	-0.75970	11.47550	10.41770	K562	PUS1
OGFOD1	ENSG00000087263.12	2094.48380	1529.66140	0.45330	10.86030	9.95380	HepG2	ZNF622
OGFOD1	ENSG00000087263.12	1502.01190	2098.25910	-0.48230	10.14350	9.28040	HepG2	SSB
OGFOD1	ENSG00000087263.12	603.19090	1127.58120	-0.90250	10.73370	8.70410	HepG2	RCC2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 97 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for OGFOD1 is not available on ENCORE database.

13 RBPs can affect the splicing of OGFOD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	OGFOD1	ENSG00000087263.12	chr16	+	56500787	56500879			56500063	56500180	56501076	56501110	-0.05700	0.00000	0.00016	excluded	HepG2	U2AF1
SE	OGFOD1	ENSG00000087263.12	chr16	+	56503914	56503994			56501816	56501930	56504398	56504703	-0.06400	0.00000	0.00004	excluded	K562	AQR
A3SS	OGFOD1	ENSG00000087263.12	chr16	+	56492424	56492506			56492459	56492506	56487139	56487320	0.10200	0.00000	0.00000	longer	K562	AQR
A3SS	OGFOD1	ENSG00000087263.12	chr16	+	56509382	56509477			56509418	56509477	56508739	56508862	0.14400	0.00000	0.00000	longer	K562	AQR
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56501076	56501205	56501816	56501930	56500787	56500879	56503914	56503994	0.10100	0.00001	0.00925	1included	K562	SDAD1
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56501076	56501205	56501816	56501930	56500787	56500879	56503914	56503994	0.10200	0.00001	0.00120	1included	K562	SAFB
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56501076	56501205	56501816	56501930	56500787	56500879	56503914	56503994	0.09800	0.00001	0.00060	1included	K562	DDX55
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56501076	56501205	56501816	56501930	56500787	56500879	56503914	56503994	0.07500	0.00002	0.00660	1included	K562	LARP4
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56501076	56501205	56501816	56501930	56500787	56500879	56503914	56503994	0.09700	0.00002	0.00627	1included	K562	ZNF800
MXE	OGFOD1	ENSG00000087263.12	chr16	+	56500787	56500879	56501076	56501205	56500063	56500180	56501816	56501930	0.17600	0.00002	0.00693	1included	K562	ZNF800

Showing 1 to 10 of 18 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

OGFOD1

General Information

Functions

Localization

Domains (AlphaFold: OGFOD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for OGFOD1 is not avaliable on ENCORE database.

19 proteins are bound to OGFOD1 RNA:

eCLIP assay for OGFOD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for OGFOD1 is not available on ENCORE database.

78 RBPs can affect the gene expression of OGFOD1 :

The Knockdown/knockout RNA-Seq assay for OGFOD1 is not available on ENCORE database.

13 RBPs can affect the splicing of OGFOD1 :

The Knockdown/knockout RNA-Seq assay for OGFOD1 is not avaliable on ENCORE database.