NECAP1

General Information

Gene Name : NECAP1
Gene ID : ENSG00000089818.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NECAP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NECAP1	ENSG00000089818.17	14.41	13.69	14.05	ENCSR000AEF
HepG2	NECAP1	ENSG00000089818.17	14.84	15.60	15.22	ENCSR985KAT
K562	NECAP1	ENSG00000089818.17	12.38	12.15	12.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NECAP1 is not avaliable on ENCORE database.

Proteins bound to RNA

NECAP1 RNA is bound by 9 proteins.

CanvasJS.com

eCLIP assay for NECAP1 is not avaliable on ENCORE database.

9 proteins are bound to NECAP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	8242632	8242688	+	intron-Proximal	5.23482	6.75320	K562	AQR
chr12	8245407	8245452	+	intron-Proximal	5.24915	6.40247	K562	SF3B4
chr12	8242762	8242825	+	3'-UTR,CDS,intron-Proximal	5.43262	6.22530	K562	AQR
chr12	8245131	8245201	+	intron-Distal,intron-Proximal	5.02460	6.19339	K562	PTBP1
chr12	8248260	8248359	+	3'-UTR,CDS,intron-Proximal	3.58710	5.35619	K562	AQR
chr12	8250295	8250357	+	3'-UTR	4.41071	4.72162	K562	KHSRP
chr12	8249703	8249778	+	3'-UTR	3.73989	4.50550	K562	UPF1
chr12	8250050	8250130	+	3'-UTR	4.38637	4.49973	K562	MATR3
chr12	8250219	8250327	+	3'-UTR	4.25880	3.35973	HepG2	FUBP3
chr12	8245120	8245192	+	intron-Distal,intron-Proximal	4.07030	3.09122	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 13 entries

eCLIP assay for NECAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NECAP1 is not available on ENCORE database.
77 RBPs can affect the levels of NECAP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.

77 RBPs can affect the gene expression of NECAP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NECAP1	ENSG00000089818.12	2984.35320	932.96810	1.67740	50.67810	48.26890	K562	PUS1
NECAP1	ENSG00000089818.12	2154.05860	871.19550	1.30590	30.70940	28.94970	K562	AQR
NECAP1	ENSG00000089818.12	1223.10770	634.95570	0.94570	27.80950	26.53570	HepG2	ZNF622
NECAP1	ENSG00000089818.12	1548.01560	653.93100	1.24310	20.79540	19.24550	HepG2	DDX3X
NECAP1	ENSG00000089818.12	243.15000	562.55700	-1.21020	15.86580	14.59720	HepG2	PUF60
NECAP1	ENSG00000089818.12	1476.76550	909.06690	0.69990	12.78850	11.51430	K562	RBM15
NECAP1	ENSG00000089818.12	450.05850	766.14230	-0.76750	11.84110	10.48260	K562	UPF1
NECAP1	ENSG00000089818.12	1380.37050	904.12570	0.61040	11.50250	10.44030	K562	AGGF1
NECAP1	ENSG00000089818.12	1255.18420	682.64640	0.87860	9.15620	8.25100	HepG2	AKAP1
NECAP1	ENSG00000089818.12	269.60550	581.04140	-1.10780	8.83440	7.64140	HepG2	EIF4B
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.

10 RBPs can affect the splicing of NECAP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NECAP1	ENSG00000089818.12	chr12	+	8244364	8244446	8242531	8242895	8245271	8245367	-0.30000	0.00001	0.00026	excluded	K562	PUS1
RI	NECAP1	ENSG00000089818.12	chr12	+	8242531	8242895	8242531	8242632	8242790	8242895	0.15500	0.00001	0.00013	included	K562	PUS1
RI	NECAP1	ENSG00000089818.12	chr12	+	8242531	8242895	8242531	8242632	8242790	8242895	0.21300	0.00017	0.00278	included	K562	RBM15
SE	NECAP1	ENSG00000089818.12	chr12	+	8244364	8244446	8242531	8242895	8245271	8245367	0.15400	0.00051	0.03614	included	HepG2	AKAP1
RI	NECAP1	ENSG00000089818.12	chr12	+	8242531	8242895	8242531	8242632	8242790	8242895	0.13400	0.00073	0.01060	included	K562	AGGF1
RI	NECAP1	ENSG00000089818.12	chr12	+	8242531	8242895	8242531	8242632	8242790	8242895	0.14200	0.00106	0.01528	included	K562	UTP18
SE	NECAP1	ENSG00000089818.12	chr12	+	8244364	8244446	8242531	8242895	8245271	8245367	0.16400	0.00146	0.09793	included	HepG2	G3BP1
SE	NECAP1	ENSG00000089818.12	chr12	+	8244364	8244446	8242531	8242895	8245271	8245367	0.13700	0.00173	0.09932	included	HepG2	DDX3X
SE	NECAP1	ENSG00000089818.12	chr12	+	8244364	8244446	8242531	8242895	8245271	8245367	-0.19800	0.00183	0.04330	excluded	K562	RBM15
RI	NECAP1	ENSG00000089818.12	chr12	+	8242531	8242895	8242531	8242632	8242790	8242895	-0.11400	0.00190	0.07889	excluded	K562	SBDS

Showing 1 to 10 of 13 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NECAP1

General Information

Functions

Localization

Domains (AlphaFold: NECAP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NECAP1 is not avaliable on ENCORE database.

9 proteins are bound to NECAP1 RNA:

eCLIP assay for NECAP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.

77 RBPs can affect the gene expression of NECAP1 :

The Knockdown/knockout RNA-Seq assay for NECAP1 is not available on ENCORE database.

10 RBPs can affect the splicing of NECAP1 :

The Knockdown/knockout RNA-Seq assay for NECAP1 is not avaliable on ENCORE database.