LIME1

General Information

Gene Name : LIME1
Gene ID : ENSG00000203896.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LIME1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LIME1	ENSG00000203896.9	0.20	0.74	0.47	ENCSR000AEF
HepG2	LIME1	ENSG00000203896.9	17.39	0.99	9.19	ENCSR985KAT
K562	LIME1	ENSG00000203896.9	1.69	0.56	1.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LIME1 is not avaliable on ENCORE database.

Proteins bound to RNA

LIME1 RNA is bound by 29 proteins.

CanvasJS.com

eCLIP assay for LIME1 is not avaliable on ENCORE database.

29 proteins are bound to LIME1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	62370189	62370290	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.85567	22.48251	HepG2	LARP4
chr20	62368824	62368914	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.62671	20.84527	K562	SF3B4
chr20	62368835	62368903	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.96206	20.05715	HepG2	SF3B4
chr20	62368584	62368664	+	5'-UTR,intron-Distal	6.54348	19.56321	K562	XRN2
chr20	62369880	62370008	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06899	14.42760	HepG2	EFTUD2
chr20	62370290	62370346	+	3'-UTR,intron-Distal,intron-Proximal	3.51053	14.13076	HepG2	LARP4
chr20	62369819	62369917	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.73946	13.52745	HepG2	PRPF8
chr20	62369550	62369626	+	3'-UTR,CDS	3.36680	12.62157	HepG2	NCBP2
chr20	62369714	62369778	+	3'-UTR,CDS,intron-Proximal	3.60943	12.27709	HepG2	DDX3X
chr20	62368100	62368175	+	intron-Distal,intron-Proximal	4.85822	12.11344	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for LIME1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for LIME1 is not available on ENCORE database.
92 RBPs can affect the levels of LIME1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.

92 RBPs can affect the gene expression of LIME1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LIME1	ENSG00000203896.5	1319.88310	410.93810	1.68330	61.02620	58.96270	HepG2	DKC1
LIME1	ENSG00000203896.5	431.84020	45.61120	3.24290	44.22090	42.21270	HepG2	PUF60
LIME1	ENSG00000203896.5	40.65380	278.13490	-2.77430	34.39290	32.69770	HepG2	TAF15
LIME1	ENSG00000203896.5	118.02230	443.89520	-1.91120	32.10190	30.88550	HepG2	SRFBP1
LIME1	ENSG00000203896.5	365.94030	43.72360	3.06500	31.49730	29.64970	HepG2	SLBP
LIME1	ENSG00000203896.5	995.63700	253.31880	1.97460	29.44690	27.48670	HepG2	MAGOH
LIME1	ENSG00000203896.5	74.55700	309.43670	-2.05320	24.20110	23.10440	HepG2	SRSF1
LIME1	ENSG00000203896.5	129.33640	393.01330	-1.60350	21.22450	20.06250	HepG2	RBM22
LIME1	ENSG00000203896.5	70.11470	251.74360	-1.84420	20.28230	19.04030	HepG2	SRSF9
LIME1	ENSG00000203896.5	170.95650	429.53490	-1.32910	20.16460	18.85830	HepG2	ACO1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.

9 RBPs can affect the splicing of LIME1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.35900	0.00001	0.00037	excluded	HepG2	NCBP2
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.46600	0.00006	0.00294	excluded	HepG2	PTBP1
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.27700	0.00210	0.01731	excluded	HepG2	SF3B4
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	0.25200	0.00234	0.01452	included	K562	AQR
RI	LIME1	ENSG00000203896.5	chr20	+	62369173	62369413	62369173	62369255	62369360	62369413	0.70200	0.00294	0.06014	included	HepG2	FTO
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.43900	0.00320	0.09307	excluded	HepG2	AKAP1
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	0.23500	0.00484	0.07908	included	HepG2	KHSRP
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.47900	0.00520	0.09001	excluded	HepG2	UCHL5
RI	LIME1	ENSG00000203896.5	chr20	+	62369360	62369852	62369360	62369413	62369535	62369852	-0.22300	0.00990	0.09358	excluded	HepG2	PCBP1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LIME1

General Information

Functions

Localization

Domains (AlphaFold: LIME1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LIME1 is not avaliable on ENCORE database.

29 proteins are bound to LIME1 RNA:

eCLIP assay for LIME1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.

92 RBPs can affect the gene expression of LIME1 :

The Knockdown/knockout RNA-Seq assay for LIME1 is not available on ENCORE database.

9 RBPs can affect the splicing of LIME1 :

The Knockdown/knockout RNA-Seq assay for LIME1 is not avaliable on ENCORE database.