EIF3K

General Information

Gene Name : EIF3K
Gene ID : ENSG00000178982.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: EIF3K)

Not Available

Antibody Validation

Bethyl Labs: A301-763A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	EIF3K	ENSG00000178982.9	544.45	631.05	587.75	ENCSR000AEF
HepG2	EIF3K	ENSG00000178982.9	381.95	244.69	313.32	ENCSR985KAT
K562	EIF3K	ENSG00000178982.9	1160.69	1228.65	1194.67	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
EIF3K		A301-763A	1				BGHcLV41-33, Submitted, ENCORE2	BGKcLV46-31, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
EIF3K	K562	CRISPR			EIF3K-BGKcLV46-31,EIF3K-BGKcLV46-32	NT-BGKcLV46-1,NT-BGKcLV46-2	69.5,87.1	Submitting	ENCORE2
EIF3K	HepG2	CRISPR			EIF3K-BGHcLV41-33,EIF3K-BGHcLV41-34	NT-BGHcLV41-1,NT-BGHcLV41-2	68.1,80.0	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
EIF3K	Product_ID: A301-763A Lot_ID: 1 Source: Bethyl Labs Target Name: EIF3K-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for EIF3K is not avaliable on ENCORE database.

Proteins bound to RNA

EIF3K RNA is bound by 23 proteins.

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eCLIP assay for EIF3K is not avaliable on ENCORE database.

23 proteins are bound to EIF3K RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	39109882	39109966	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.60551	400.00000	K562	DDX3X
chr19	39109832	39109882	+	5'-UTR,intron-Proximal	4.88888	80.22708	K562	DDX3X
chr19	39125646	39125715	+	CDS,intron-Distal	4.26626	58.85013	K562	PABPC4
chr19	39114805	39114815	+	5'-UTR,CDS	3.93609	53.39386	K562	YBX3
chr19	39114801	39114805	+	5'-UTR,CDS	4.18211	52.87788	K562	YBX3
chr19	39114822	39114831	+	CDS	3.67547	46.29825	K562	YBX3
chr19	39114831	39114839	+	CDS,intron-Proximal	3.77724	43.83215	K562	YBX3
chr19	39114734	39114757	+	5'-UTR,CDS	4.31825	35.89763	K562	YBX3
chr19	39114757	39114779	+	5'-UTR,CDS	3.92560	32.41390	K562	YBX3
chr19	39109836	39109919	+	5'-UTR,CDS,intron-Proximal	4.26567	31.52934	K562	GEMIN5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 63 entries

eCLIP assay for EIF3K is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for EIF3K is not available on ENCORE database.
89 RBPs can affect the levels of EIF3K.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for EIF3K is not available on ENCORE database.

89 RBPs can affect the gene expression of EIF3K :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
EIF3K	ENSG00000178982.5	9148.00060	6194.36080	0.56240	20.28650	18.86650	K562	AGGF1
EIF3K	ENSG00000178982.5	1331.35490	2073.12030	-0.63890	15.19940	13.98090	HepG2	SF3B4
EIF3K	ENSG00000178982.5	1153.40580	1760.43820	-0.61000	14.16640	13.09270	HepG2	SRSF9
EIF3K	ENSG00000178982.5	1374.28160	3372.55790	-1.29520	14.12810	12.29630	K562	U2AF2
EIF3K	ENSG00000178982.5	5130.50230	6545.51330	-0.35140	13.25760	11.79460	K562	NSUN2
EIF3K	ENSG00000178982.5	1014.56310	3370.83760	-1.73220	13.49040	11.67440	K562	G3BP2
EIF3K	ENSG00000178982.5	1512.73130	2216.03970	-0.55080	11.66990	10.70660	HepG2	NELFE
EIF3K	ENSG00000178982.5	8873.62230	6228.21850	0.51060	11.84570	10.62410	K562	RBM15
EIF3K	ENSG00000178982.5	1413.95130	2063.93920	-0.54570	11.52450	10.39590	HepG2	RECQL
EIF3K	ENSG00000178982.5	10074.29370	6392.31080	0.65620	11.36600	10.31320	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for EIF3K is not available on ENCORE database.

21 RBPs can affect the splicing of EIF3K :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	EIF3K	ENSG00000178982.5	chr19	+	39110976	39111075			39109825	39109967	39114716	39114837	-0.06400	0.00000	excluded	K562	SDAD1
SE	EIF3K	ENSG00000178982.5	chr19	+	39123240	39123318			39123069	39123136	39125632	39125742	-0.07100	0.00027	excluded	HepG2	PCBP2
SE	EIF3K	ENSG00000178982.5	chr19	+	39110976	39111075			39109850	39109967	39114716	39114837	-0.05100	0.00005	excluded	K562	SAFB
A5SS	EIF3K	ENSG00000178982.5	chr19	+	39109734	39109942			39109734	39109863	39110976	39111075	-0.24200	0.00000	shorter	K562	RBM22
A5SS	EIF3K	ENSG00000178982.5	chr19	+	39109734	39109942			39109734	39109863	39110976	39111075	-0.10000	0.00010	shorter	K562	AQR
A5SS	EIF3K	ENSG00000178982.5	chr19	+	39116667	39116902			39116667	39116742	39123069	39123136	0.20100	0.00001	longer	HepG2	U2AF2
A5SS	EIF3K	ENSG00000178982.5	chr19	+	39109835	39109967			39109835	39109957	39110976	39111075	-0.08200	0.00000	shorter	K562	HNRNPC
MXE	EIF3K	ENSG00000178982.5	chr19	+	39123069	39123136	39125632	39125758	39116667	39116742	39127528	39127595	0.11900	0.00031	1included	K562	UCHL5
MXE	EIF3K	ENSG00000178982.5	chr19	+	39123069	39123136	39125632	39125758	39116667	39116742	39127528	39127595	0.11700	0.00031	1included	K562	XRN2
MXE	EIF3K	ENSG00000178982.5	chr19	+	39123240	39123318	39125632	39125758	39123069	39123136	39127528	39127593	0.09900	0.00048	1included	K562	XRN2

Showing 1 to 10 of 27 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

EIF3K

General Information

Functions

Localization

Domains (AlphaFold: EIF3K)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for EIF3K is not avaliable on ENCORE database.

23 proteins are bound to EIF3K RNA:

eCLIP assay for EIF3K is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for EIF3K is not available on ENCORE database.

89 RBPs can affect the gene expression of EIF3K :

The Knockdown/knockout RNA-Seq assay for EIF3K is not available on ENCORE database.

21 RBPs can affect the splicing of EIF3K :

The Knockdown/knockout RNA-Seq assay for EIF3K is not avaliable on ENCORE database.