CUX1

General Information

Gene Name       : CUX1
Gene ID             : ENSG00000257923.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CUX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CUX1ENSG00000257923.1022.2919.0620.67ENCSR000AEF
HepG2CUX1ENSG00000257923.1018.6817.0617.87ENCSR985KAT
K562CUX1ENSG00000257923.1023.0621.6622.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CUX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CUX1 RNA is bound by 66 proteins.  







eCLIP assay for CUX1 is not avaliable on ENCORE database.





66 proteins are bound to CUX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7101927012101927088+3'-UTR3.383796.42991HepG2LARP4
chr7101926437101926530+3'-UTR3.061233.96118HepG2LARP4
chr7101892273101892365+3'-UTR,CDS,intron-Distal4.509895.18660HepG2PPIG
chr7101892415101892471+3'-UTR,intron-Distal3.394554.38249K562RBM15
chr7101926458101926536+3'-UTR3.543433.46993K562DDX6
chr7101894025101894153+3'-UTR,intron-Distal4.029663.34609K562TARDBP
chr7101894545101894600+3'-UTR,intron-Distal4.416374.97297K562TIA1
chr7101927112101927187+3'-UTR3.396404.74241K562YBX3
chr7101927005101927090+3'-UTR6.1091920.98254K562PABPC4
chr7101926435101926528+3'-UTR3.124625.11706K562DDX55
chr7101926407101926526+3'-UTR6.0961129.06421K562PABPC4
chr7101926991101927087+3'-UTR4.589234.67506HepG2DDX55
chr7101460889101460915+5'-UTR,intron-Distal4.309904.48497K562NONO
chr7101460915101460967+5'-UTR,CDS,intron-Distal,intron-Proximal5.3503610.50469K562NONO
chr7101837123101837226+CDS,intron-Proximal3.577675.34337K562AQR
chr7101840582101840603+CDS,intron-Distal,intron-Proximal4.278566.77156K562AQR
chr7101740705101740777+CDS,intron-Distal4.359824.34038HepG2BCLAF1
chr7101747699101747741+CDS,intron-Proximal3.395026.60490HepG2BCLAF1
chr7101892190101892231+CDS,intron-Distal4.1623511.20412K562RBM15
chr7101813708101813775+CDS,intron-Proximal4.3628911.12444HepG2U2AF2
chr7101813724101813763+CDS,intron-Proximal3.729545.08388K562UCHL5
chr7101840068101840125+CDS,intron-Distal,intron-Proximal3.055643.13141K562RBM15
chr7101821783101821836+CDS3.123453.13705K562BUD13
chr7101813717101813831+CDS,intron-Proximal5.5708912.18059HepG2PPIG
chr7101840398101840463+CDS,intron-Distal4.679565.59615K562ZNF622
chr7101755012101755061+CDS,intron-Proximal3.857208.25234K562ZNF622
chr7101740643101740725+CDS,intron-Distal,intron-Proximal3.554596.98424K562UCHL5
chr7101801837101801885+CDS,intron-Proximal4.200854.96452K562YBX3
chr7101837129101837174+CDS,intron-Proximal4.245235.23082K562DDX24
chr7101892180101892190+CDS,intron-Distal4.545789.72826K562RBM15
chr7101671376101671428+CDS,intron-Distal,intron-Proximal3.333086.81726HepG2GRWD1
chr7101459354101459387+CDS,intron-Proximal3.239304.77136HepG2PPIG
chr7101837120101837172+CDS,intron-Proximal3.464255.58370HepG2PPIG
chr7101801883101801901+CDS,intron-Proximal4.088365.90868HepG2PRPF8
chr7101713672101713706+CDS,intron-Proximal4.281183.82843HepG2PPIG
chr7101837120101837173+CDS,intron-Proximal3.002913.49055K562GRWD1
chr7101801849101801877+CDS3.447785.02671K562PUM1
chr7101755045101755120+CDS,intron-Proximal4.012855.47926K562AQR
chr7101671376101671426+CDS,intron-Distal,intron-Proximal3.177046.50573K562ZNF800
chr7101821921101821991+CDS,intron-Proximal3.325886.98138HepG2PRPF8
chr7101877458101877501+CDS,intron-Distal4.202103.87582K562ZNF622
chr7101559435101559507+CDS,intron-Distal,intron-Proximal3.1979614.06720K562ZNF622
chr7101559392101559443+CDS,intron-Distal,intron-Proximal3.656319.06911HepG2GRWD1
chr7101758489101758555+CDS,intron-Proximal3.590124.13746HepG2PPIG
chr7101838783101838885+CDS,intron-Proximal4.157075.05331K562GRWD1
chr7101813772101813836+CDS,intron-Proximal3.165283.40321HepG2GRWD1
chr7101747703101747741+CDS,intron-Proximal4.107184.45558HepG2GRWD1
chr7101671377101671438+CDS,intron-Distal,intron-Proximal3.817559.20662K562DDX24
chr7101754976101755056+CDS,intron-Proximal3.382377.93794HepG2BCLAF1
chr7101801834101801891+CDS,intron-Proximal3.512365.58370HepG2PPIG
chr7101844953101845251+CDS,intron-Distal3.215715.51671HepG2PPIG
chr7101821742101821789+CDS,intron-Proximal4.349943.20743HepG2PPIG
chr7101813715101813813+CDS,intron-Proximal4.593166.93329K562DDX24
chr7101713605101713643+CDS,intron-Proximal4.553613.77802HepG2U2AF2
chr7101671377101671428+CDS,intron-Distal,intron-Proximal4.0544511.27084HepG2PPIG
chr7101838785101838870+CDS,intron-Proximal4.263475.18972HepG2GRWD1
chr7101713616101713672+CDS,intron-Proximal3.212684.39623HepG2PPIG
chr7101813763101813828+CDS3.967585.85226K562UCHL5
chr7101838874101838934+CDS,intron-Proximal3.107703.40738HepG2PRPF8
chr7101845177101845262+CDS,intron-Distal4.696135.14565K562UCHL5
chr7101740643101740705+CDS,intron-Distal,intron-Proximal3.008143.55800HepG2BCLAF1
chr7101801837101801849+CDS,intron-Proximal3.205074.45146K562PUM1
chr7101758487101758561+CDS,intron-Proximal3.042167.60260K562ZNF622
chr7101813711101813770+CDS,intron-Proximal3.545236.04627K562U2AF2
chr7101754976101755012+CDS,intron-Proximal3.302119.04720K562ZNF622
chr7101754996101755060+CDS,intron-Proximal3.041617.74050K562UCHL5
chr7101754973101755058+CDS,intron-Proximal4.209969.56105HepG2PPIG
chr7101713618101713665+CDS,intron-Proximal3.154904.00731K562UCHL5
chr7101801845101801894+CDS,intron-Proximal3.112723.41227K562UCHL5
chr7101758493101758556+CDS,intron-Proximal3.918128.08603HepG2BCLAF1
chr7101845061101845139+CDS,intron-Distal4.124263.01428K562UCHL5
chr7101821769101821876+CDS3.081073.46619K562GRWD1
chr7101754973101755055+CDS,intron-Proximal3.916537.58497HepG2GRWD1
chr7101747613101747699+CDS,intron-Proximal3.359826.20035HepG2BCLAF1
chr7101821746101821928+CDS,intron-Proximal3.374206.35635K562UCHL5
chr7101833149101833199+CDS,intron-Proximal4.965816.92731HepG2PRPF8
chr7101559443101559513+CDS,intron-Distal,intron-Proximal3.9310811.73211HepG2GRWD1
chr7101847658101847713+CDS,intron-Distal,intron-Proximal4.203684.23351K562BUD13
chr7101747706101747739+CDS3.999909.36792K562ZNF622
chr7101840422101840475+CDS,intron-Distal4.040583.36385K562UCHL5
chr7101460348101460401+intron-Distal3.735635.52511K562PHF6
chr7101472210101472304+intron-Distal4.051207.21436K562GTF2F1
chr7101565931101566098+intron-Distal3.962687.29513HepG2PRPF4
chr7101512192101512259+intron-Distal3.913936.26465HepG2CSTF2T
chr7101580407101580459+intron-Distal3.764933.07008K562NONO
chr7101476217101476284+intron-Distal3.348313.62708K562CSTF2T
chr7101461060101461121+intron-Distal3.616946.19800K562DDX52
chr7101488309101488351+intron-Distal4.685565.05386K562PTBP1
chr7101579824101579914+intron-Distal3.686413.15816HepG2PRPF4
chr7101460275101460321+intron-Distal4.7511911.79262HepG2NKRF
chr7101475993101476072+intron-Distal4.5049311.18703K562NONO
chr7101595990101596045+intron-Distal4.933456.64417K562NONO
chr7101463833101463896+intron-Distal4.172609.41035K562KHSRP
chr7101460006101460070+intron-Distal6.339619.70629HepG2XRN2
chr7101639976101640065+intron-Distal4.7265110.16455K562ILF3
chr7101512689101512725+intron-Distal3.832793.16310HepG2CSTF2T
chr7101460794101460841+intron-Distal4.978757.35452K562NONO
chr7101497601101497651+intron-Distal4.108963.82910K562NONO
chr7101462319101462388+intron-Distal,intron-Proximal4.425098.70378HepG2HNRNPM
chr7101461075101461134+intron-Distal3.386355.92487HepG2SFPQ
chr7101460462101460520+intron-Distal3.142995.66476K562DROSHA
chr7101521071101521119+intron-Distal3.446194.05280K562CSTF2T
chr7101860132101860222+intron-Distal3.728514.70733K562HNRNPL
chr7101472253101472305+intron-Distal3.159043.15535K562EWSR1
chr7101901524101901584+intron-Distal4.047444.27913HepG2CSTF2
chr7101621658101621773+intron-Distal4.235043.91009K562HNRNPK
chr7101512207101512259+intron-Distal4.050493.28464K562EWSR1
chr7101474369101474457+intron-Distal3.168497.60227K562NONO
chr7101578914101578964+intron-Distal4.040313.16310HepG2CSTF2T
chr7101461059101461122+intron-Distal4.166813.88813HepG2DGCR8
chr7101461252101461348+intron-Distal3.193075.98045K562KHSRP
chr7101470515101470579+intron-Distal5.7050910.89838HepG2PTBP1
chr7101503020101503044+intron-Distal3.223353.10639HepG2PTBP1
chr7101459913101459968+intron-Distal3.192363.13759K562XRN2
chr7101462237101462319+intron-Distal,intron-Proximal3.625804.61500HepG2HNRNPM
chr7101459475101459550+intron-Distal3.567839.94306HepG2CSTF2T
chr7101473577101473641+intron-Distal4.064417.33288K562NONO
chr7101561015101561102+intron-Distal3.757095.22299HepG2SFPQ
chr7101461051101461135+intron-Distal3.167036.85783K562CSTF2T
chr7101460986101461048+intron-Distal,intron-Proximal3.9532110.31758K562NONO
chr7101472238101472313+intron-Distal3.916705.52022HepG2FAM120A
chr7101469491101469545+intron-Distal3.273925.56519HepG2HNRNPC
chr7101603467101603531+intron-Distal3.629614.85046K562NONO
chr7101460586101460655+intron-Distal4.213677.65541K562TIA1
chr7101566337101566398+intron-Distal3.340936.60059K562NONO
chr7101505820101505871+intron-Distal6.6639618.46322HepG2XPO5
chr7101475735101475782+intron-Distal3.202163.14895K562NONO
chr7101496962101497116+intron-Distal4.397484.78076K562HNRNPM
chr7101471267101471323+intron-Distal4.455215.47721HepG2HNRNPC
chr7101562696101562805+intron-Distal4.459994.51309K562HNRNPM
chr7101566284101566344+intron-Distal3.463884.96675K562TIA1
chr7101497378101497422+intron-Distal3.306913.59523HepG2SUGP2
chr7101495121101495130+intron-Distal3.859148.14904K562MATR3
chr7101843290101843341+intron-Distal,intron-Proximal4.176233.82050HepG2SF3B4
chr7101466593101466648+intron-Distal4.8145715.09913HepG2QKI
chr7101559994101560038+intron-Distal3.984993.06347K562NONO
chr7101475428101475495+intron-Distal4.159503.80512K562CSTF2T
chr7101460305101460400+intron-Distal3.240596.93757K562CSTF2T
chr7101503408101503433+intron-Distal4.6885810.55454HepG2PTBP1
chr7101596072101596163+intron-Distal3.755497.45759K562NONO
chr7101476046101476159+intron-Distal5.6113213.81267HepG2XPO5
chr7101459469101459504+intron-Distal,intron-Proximal5.595158.86865K562GEMIN5
chr7101860092101860216+intron-Distal7.6244344.23685K562AGGF1
chr7101594315101594391+intron-Distal3.779343.00349HepG2ILF3
chr7101512845101512948+intron-Distal4.393093.96304K562CSTF2T
chr7101476208101476286+intron-Distal4.363244.70436K562EWSR1
chr7101768467101768548+intron-Distal3.297883.01707K562SLTM
chr7101461058101461122+intron-Distal3.502186.16126HepG2FAM120A
chr7101531707101531819+intron-Distal4.163163.57432K562NONO
chr7101503787101503865+intron-Distal4.221204.50962K562SSB
chr7101461079101461122+intron-Distal4.5362611.83117K562GEMIN5
chr7101488351101488457+intron-Distal3.8084811.46790K562PTBP1
chr7101460383101460449+intron-Distal3.9380214.29487K562NONO
chr7101596235101596324+intron-Distal5.031658.33684K562NONO
chr7101643163101643231+intron-Distal4.550576.02873K562TARDBP
chr7101512111101512172+intron-Distal3.451523.93602K562EWSR1
chr7101671449101671495+intron-Distal,intron-Proximal5.189827.01471K562TIA1
chr7101475404101475488+intron-Distal3.842523.52365K562FUS
chr7101459905101459963+intron-Distal4.822086.64314K562CSTF2T
chr7101472983101473042+intron-Distal3.017653.57593K562GTF2F1
chr7101475436101475529+intron-Distal4.251194.36718HepG2NKRF
chr7101460226101460257+intron-Distal4.462095.19780K562NONO
chr7101596163101596214+intron-Distal3.705615.60091K562NONO
chr7101563118101563181+intron-Distal3.683524.59961K562NONO
chr7101460168101460184+intron-Distal4.858186.40474K562GEMIN5
chr7101512115101512159+intron-Distal4.287034.28089HepG2FAM120A
chr7101472246101472301+intron-Distal3.378994.14880HepG2CSTF2T
chr7101703871101703952+intron-Distal4.5806015.37189K562AGGF1
chr7101459931101459943+intron-Distal3.927224.11089HepG2XRN2
chr7101561011101561095+intron-Distal3.953217.33288K562NONO
chr7101496853101496939+intron-Distal4.789357.51195K562TARDBP
chr7101461040101461123+intron-Distal,intron-Proximal3.2254311.16038HepG2CSTF2T
chr7101636152101636286+intron-Distal4.221463.99137K562NONO
chr7101578975101579054+intron-Distal3.768163.15816HepG2PRPF4
chr7101579513101579626+intron-Distal4.471096.63735K562GTF2F1
chr7101473355101473398+intron-Distal4.742447.09445K562NONO
chr7101460346101460414+intron-Distal3.957365.51953HepG2SFPQ
chr7101460013101460059+intron-Distal4.0051110.93103HepG2CSTF2T
chr7101460596101460665+intron-Distal3.437089.25256HepG2CSTF2T
chr7101469044101469117+intron-Distal3.772833.07706HepG2TIAL1
chr7101480642101480740+intron-Distal3.631324.16303HepG2SFPQ
chr7101460441101460547+intron-Distal4.297815.04042K562IGF2BP2
chr7101861352101861397+intron-Distal4.906805.28062HepG2XPO5
chr7101466788101466863+intron-Distal4.016668.66679K562TARDBP
chr7101505821101505863+intron-Distal3.168003.80158K562NONO
chr7101461058101461117+intron-Distal3.060384.09267K562FAM120A
chr7101835024101835175+intron-Distal5.8804912.28789HepG2PTBP1
chr7101559788101559798+intron-Distal3.881883.37130HepG2DGCR8
chr7101565964101566117+intron-Distal4.172286.85082HepG2FAM120A
chr7101602530101602593+intron-Distal5.4948912.90461K562TARDBP
chr7101497455101497535+intron-Distal4.913267.00934K562TARDBP
chr7101639964101640041+intron-Distal4.572923.41738HepG2PTBP1
chr7101475615101475679+intron-Distal3.599734.94042K562NONO
chr7101504047101504139+intron-Distal4.4572612.97146HepG2PTBP1
chr7101858540101858583+intron-Distal4.401153.79905K562AGGF1
chr7101635513101635535+intron-Distal3.878145.86179K562XRN2
chr7101580027101580081+intron-Distal3.785723.06347K562NONO
chr7101503336101503444+intron-Distal4.790466.17200HepG2PCBP2
chr7101459910101459965+intron-Distal3.257387.00108HepG2CSTF2T
chr7101581641101581767+intron-Distal3.025273.33460HepG2ILF3
chr7101512114101512160+intron-Distal4.221594.68055HepG2CSTF2T
chr7101461050101461119+intron-Distal3.979957.96984K562DHX30
chr7101573875101573923+intron-Distal3.372174.08493K562HNRNPM
chr7101694311101694452+intron-Distal3.958383.06617K562HNRNPK
chr7101818713101818858+intron-Distal5.2345810.14121HepG2HNRNPK
chr7101460466101460505+intron-Distal3.778407.45759K562NONO
chr7101461286101461337+intron-Distal4.339989.40313K562NONO
chr7101559798101559838+intron-Distal4.103353.61881HepG2DGCR8
chr7101690681101690757+intron-Distal4.440734.19739K562EIF4G2
chr7101859681101859722+intron-Distal4.879614.30270K562AGGF1
chr7101476218101476271+intron-Distal3.646584.85046K562NONO
chr7101523126101523192+intron-Distal3.146883.89868HepG2RBFOX2
chr7101501648101501804+intron-Distal3.485446.79343HepG2PCBP2
chr7101562491101562542+intron-Distal3.510204.71513K562NONO
chr7101459973101459995+intron-Distal4.803263.17453HepG2XRN2
chr7101566055101566135+intron-Distal3.012783.87436K562NONO
chr7101459483101459550+intron-Distal4.041237.33270K562DROSHA
chr7101562054101562114+intron-Distal3.177603.84371HepG2HNRNPC
chr7101860160101860343+intron-Distal3.813153.03048HepG2GTF2F1
chr7101459484101459555+intron-Distal3.330605.54139K562AKAP8L
chr7101566343101566474+intron-Distal4.6127311.62920K562HNRNPM
chr7101488318101488459+intron-Distal3.112756.72895HepG2PTBP1
chr7101459907101459967+intron-Distal5.7149913.69613K562NONO
chr7101602506101602613+intron-Distal4.375777.84958K562EIF4G2
chr7101639991101640053+intron-Distal4.043294.22598K562CSTF2T
chr7101603073101603132+intron-Distal3.428424.59961K562NONO
chr7101459487101459565+intron-Distal5.282909.80174K562NONO
chr7101635535101635559+intron-Distal4.841146.60285K562XRN2
chr7101461048101461133+intron-Distal,intron-Proximal4.3252717.68567K562NONO
chr7101459465101459527+intron-Distal,intron-Proximal3.849475.42305HepG2XRN2
chr7101470548101470639+intron-Distal4.078033.47525K562MATR3
chr7101461042101461116+intron-Distal,intron-Proximal3.640016.87801K562XRN2
chr7101459476101459533+intron-Distal3.107853.14636HepG2FAM120A
chr7101635518101635563+intron-Distal4.017684.38582HepG2XRN2
chr7101508929101508998+intron-Distal3.110263.36616K562NONO
chr7101606671101606708+intron-Distal4.181153.53896K562NONO
chr7101562831101562879+intron-Distal3.309904.01575K562NONO
chr7101527354101527411+intron-Distal3.072744.63037HepG2HNRNPC
chr7101818916101819000+intron-Distal3.941103.62737K562HNRNPK
chr7101573757101573820+intron-Distal3.575774.31658K562EXOSC5
chr7101835016101835146+intron-Distal5.180549.53330K562PTBP1
chr7101820987101821079+intron-Distal3.209843.35585HepG2QKI
chr7101459477101459550+intron-Distal4.6159617.50064HepG2NKRF
chr7101496848101496948+intron-Distal6.076628.53131K562EIF4G2
chr7101566533101566611+intron-Distal3.284355.15666K562NONO
chr7101503936101504011+intron-Distal4.1058410.98899HepG2PTBP1
chr7101503386101503408+intron-Distal5.9449214.03089HepG2PTBP1
chr7101460155101460192+intron-Distal3.273944.59930HepG2NKRF
chr7101473234101473298+intron-Distal3.759016.03429HepG2CSTF2T
chr7101472227101472310+intron-Distal4.174387.73723HepG2GTF2F1
chr7101818858101819022+intron-Distal3.900579.27417HepG2HNRNPK
chr7101595816101595889+intron-Distal3.721465.10104K562NONO
chr7101624622101624726+intron-Distal3.560135.39069K562TARDBP
chr7101512904101512961+intron-Distal3.067774.46520HepG2CSTF2T
chr7101512445101512511+intron-Distal3.103113.01436K562CSTF2T
chr7101503388101503448+intron-Distal6.8817252.32606K562PTBP1
chr7101469055101469164+intron-Distal5.1690910.05687K562TARDBP
chr7101472225101472308+intron-Distal3.056815.35897HepG2PRPF4
chr7101459911101459966+intron-Distal3.7329916.12676HepG2NKRF
chr7101503185101503275+intron-Distal3.838339.44629HepG2PTBP1
chr7101459999101460058+intron-Distal3.859073.77433K562XRN2
chr7101703855101703963+intron-Distal4.316675.55877HepG2HNRNPL
chr7101589896101589978+intron-Distal3.286533.23164HepG2PRPF4
chr7101470579101470651+intron-Distal4.9927339.21529K562PTBP1
chr7101512668101512734+intron-Distal4.142953.57893K562EWSR1
chr7101860115101860199+intron-Distal4.657436.88352HepG2HNRNPL
chr7101839181101839287+intron-Distal3.305413.11000HepG2HNRNPM
chr7101557709101557788+intron-Distal3.963906.14899HepG2PCBP2
chr7101461079101461138+intron-Distal3.329185.46585K562LSM11
chr7101460276101460326+intron-Distal4.386899.37458K562NONO
chr7101464302101464352+intron-Distal3.292805.48395K562EIF4G2
chr7101639932101640035+intron-Distal4.026763.17235HepG2HNRNPK
chr7101512181101512249+intron-Distal3.137503.30948HepG2PRPF4
chr7101460327101460439+intron-Distal3.510516.14594HepG2FAM120A
chr7101583657101583752+intron-Distal4.040153.60235HepG2HNRNPM
chr7101583844101583912+intron-Distal4.431034.96658K562KHSRP
chr7101464293101464399+intron-Distal4.9524824.87528K562TARDBP
chr7101476209101476303+intron-Distal3.699435.59508HepG2NKRF
chr7101487462101487552+intron-Distal3.743833.06084HepG2HNRNPK
chr7101495121101495166+intron-Distal4.353497.51194HepG2MATR3
chr7101667028101667169+intron-Distal4.043674.13603K562TARDBP
chr7101459993101460074+intron-Distal4.185744.20198HepG2FAM120A
chr7101466648101466683+intron-Distal3.470054.23286HepG2QKI
chr7101469034101469161+intron-Distal5.8440345.41983K562EIF4G2
chr7101639796101639838+intron-Distal4.029354.07991K562ILF3
chr7101559789101559840+intron-Distal3.826055.28604K562DGCR8
chr7101472990101473032+intron-Distal4.481885.86222K562NONO
chr7101606575101606671+intron-Distal3.738437.84057K562NONO
chr7101460104101460151+intron-Distal4.274974.38582HepG2XRN2
chr7101482494101482620+intron-Distal3.567285.09665HepG2HNRNPK
chr7101639961101640023+intron-Distal5.092754.92687K562PCBP1
chr7101504048101504144+intron-Distal6.6965042.40230K562PTBP1
chr7101460326101460382+intron-Distal4.3460814.16863K562NONO
chr7101606802101606855+intron-Distal3.120643.38183K562NONO
chr7101460321101460424+intron-Distal3.9187821.60302HepG2NKRF
chr7101588982101588999+intron-Distal4.789586.10679HepG2RBFOX2
chr7101494621101494723+intron-Distal5.101688.23486K562MATR3
chr7101504262101504306+intron-Distal5.2615713.64011K562PTBP1
chr7101567313101567392+intron-Distal4.937636.45442HepG2HNRNPM
chr7101588999101589067+intron-Distal4.212087.68118HepG2RBFOX2
chr7101494610101494634+intron-Distal3.088733.35050HepG2SUGP2
chr7101603238101603286+intron-Distal3.107653.58549K562NONO
chr7101460439101460542+intron-Distal4.225666.87013HepG2FAM120A
chr7101494927101495023+intron-Distal5.116088.82141K562MATR3
chr7101578705101578794+intron-Distal3.792979.54994K562NONO
chr7101651579101651660+intron-Distal3.609563.30744K562PTBP1
chr7101835005101835145+intron-Distal4.261107.55788K562MATR3
chr7101859723101859800+intron-Distal4.703136.95426HepG2AGGF1
chr7101512432101512545+intron-Distal3.730179.78761HepG2CSTF2T
chr7101461152101461226+intron-Distal4.7260713.01833K562NONO
chr7101460025101460067+intron-Distal5.491939.70042K562GEMIN5
chr7101562494101562580+intron-Distal4.132324.39969K562TARDBP
chr7101460434101460552+intron-Distal3.7149315.79822HepG2CSTF2T
chr7101573864101573942+intron-Distal3.097413.33745HepG2HNRNPM
chr7101639968101640037+intron-Distal4.656214.35687HepG2DDX59
chr7101621554101621658+intron-Distal4.571066.13079HepG2HNRNPK
chr7101460989101461051+intron-Distal,intron-Proximal3.026485.47824K562CSTF2T
chr7101565959101566053+intron-Distal3.690143.34442K562FUS
chr7101578794101578864+intron-Distal3.569964.25264K562NONO
chr7101578891101578934+intron-Distal4.044643.57432K562NONO
chr7101460220101460254+intron-Distal5.192934.33932HepG2XRN2
chr7101862449101862509+intron-Distal3.810864.05919K562AGGF1
chr7101630434101630522+intron-Distal4.164383.31905K562NONO
chr7101579838101579898+intron-Distal3.090674.68402HepG2CSTF2T
chr7101494955101495005+intron-Distal3.482534.84410HepG2SUGP2
chr7101840603101840629+intron-Distal,intron-Proximal5.278567.63570K562AQR
chr7101494636101494762+intron-Distal3.641125.89415HepG2MATR3
chr7101503275101503386+intron-Distal6.3360619.99216HepG2PTBP1
chr7101804697101804782+intron-Distal4.7861510.54834K562AKAP8L
chr7101470579101470599+intron-Distal5.4996229.99688HepG2PTBP1
chr7101505635101505745+intron-Distal3.567198.12417K562NONO
chr7101575722101575832+intron-Distal3.331663.21744HepG2HNRNPC
chr7101460338101460381+intron-Distal5.1254911.47218K562GEMIN5
chr7101460384101460455+intron-Distal5.789259.40623HepG2XRN2
chr7101566038101566142+intron-Distal3.067423.72797K562GTF2F1
chr7101460960101461125+intron-Distal,intron-Proximal3.4335721.14035HepG2NKRF
chr7101512845101512891+intron-Distal3.451314.45183HepG2CSTF2T
chr7101562694101562782+intron-Distal4.181383.91671HepG2RBFOX2
chr7101639942101640050+intron-Distal6.7573241.35108HepG2PCBP2
chr7101860271101860352+intron-Distal4.117313.80954K562HNRNPL
chr7101460400101460433+intron-Distal3.073383.89482K562CSTF2T
chr7101475839101475926+intron-Distal3.175804.32739K562NONO
chr7101860231101860350+intron-Distal7.0144230.15131K562AGGF1
chr7101459504101459542+intron-Distal5.469388.86865K562GEMIN5
chr7101460010101460073+intron-Distal3.2690910.64028HepG2NKRF
chr7101559871101559949+intron-Distal3.600327.68379K562NONO
chr7101508814101508900+intron-Distal4.168003.99137K562NONO
chr7101459390101459537+intron-Distal,intron-Proximal3.617053.38753K562FAM120A
chr7101496851101496940+intron-Distal4.263493.97692K562IGF2BP1
chr7101460997101461138+intron-Distal,intron-Proximal3.132919.67238K562EWSR1
chr7101469034101469119+intron-Distal4.504045.59872HepG2IGF2BP1
chr7101503941101504002+intron-Distal5.2188511.52400K562PTBP1
chr7101746669101746766+intron-Distal4.743304.30178K562PTBP1
chr7101460424101460490+intron-Distal3.5387214.21908HepG2NKRF
chr7101546908101547038+intron-Distal3.377934.98988K562NONO
chr7101566424101566516+intron-Distal3.510126.99195K562NONO
chr7101460798101460831+intron-Distal3.170034.37235HepG2NKRF
chr7101460358101460406+intron-Distal3.010463.03889HepG2FKBP4
chr7101460991101461040+intron-Distal,intron-Proximal3.285477.23670HepG2CSTF2T
chr7101563130101563194+intron-Distal4.129933.28946K562FTO
chr7101470544101470579+intron-Distal3.622804.93942K562PTBP1
chr7101472378101472425+intron-Distal3.777433.37414K562CSTF2T
chr7101639973101640044+intron-Distal5.209318.22784HepG2U2AF2
chr7101637157101637251+intron-Distal3.923403.34601K562HNRNPK
chr7101531712101531820+intron-Distal3.499813.90141HepG2SFPQ
chr7101818703101818784+intron-Distal4.829635.27102K562HNRNPK
chr7101460955101460996+intron-Distal,intron-Proximal3.509263.41462K562EWSR1
chr7101621812101621891+intron-Distal3.796353.11802K562HNRNPK
chr7101472252101472316+intron-Distal3.642575.12237K562CSTF2T
chr7101463859101463907+intron-Distal4.030193.82910K562NONO
chr7101461162101461216+intron-Distal4.882586.73862HepG2SFPQ
chr7101583912101583994+intron-Distal4.237274.31512K562KHSRP
chr7101598488101598567+intron-Distal3.239163.38183K562NONO
chr7101503276101503340+intron-Distal5.4762621.62382K562PTBP1
chr7101475560101475682+intron-Distal3.813745.99425K562CSTF2T
chr7101472980101473040+intron-Distal4.444714.27572HepG2HNRNPUL1
chr7101703865101703962+intron-Distal5.8253113.95452K562HNRNPL
chr7101496887101496942+intron-Distal3.403766.79980HepG2SUGP2
chr7101605796101605903+intron-Distal3.928426.34658K562NONO
chr7101495130101495167+intron-Distal3.749749.80693K562MATR3
chr7101557748101557839+intron-Distal4.149503.57543K562ILF3
chr7101511699101511779+intron-Distal4.140973.57432K562NONO
chr7101470599101470635+intron-Distal5.0006528.16294HepG2PTBP1
chr7101476088101476155+intron-Distal4.777475.19780K562NONO
chr7101539639101539735+intron-Distal4.056053.69425K562TARDBP
chr7101566295101566423+intron-Distal3.082548.29439HepG2HNRNPM
chr7101463945101463982+intron-Distal3.959683.06347K562NONO
chr7101503340101503388+intron-Distal5.8398919.11918K562PTBP1
chr7101473460101473506+intron-Distal4.640976.64417K562NONO
chr7101501621101501698+intron-Distal3.936824.32448K562PTBP1
chr7101562597101562653+intron-Distal4.062723.57893K562EWSR1
chr7101589910101589987+intron-Distal4.652385.23961K562GTF2F1
chr7101459388101459465+intron-Proximal3.601883.04479HepG2XRN2
chr7101838883101838929+intron-Proximal4.667368.01338K562AQR
chr7101459384101459469+intron-Proximal3.146856.82728HepG2NKRF
chr7101459386101459469+intron-Proximal4.2618612.57674K562GEMIN5
chr7101459404101459464+intron-Proximal3.170423.96313HepG2FAM120A
chr7101459379101459464+intron-Proximal4.1636712.46509HepG2CSTF2T
chr7101801901101801942+intron-Proximal3.588365.35401HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CUX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CUX1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of CUX1.  








The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.





55 RBPs can affect the gene expression of CUX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CUX1ENSG00000257923.51105.314401446.70400-0.388305.340304.43910HepG2AUH
CUX1ENSG00000257923.51496.932401085.176200.464006.010605.13220HepG2CELF1
CUX1ENSG00000257923.5958.668101314.72730-0.455703.505002.81060HepG2DDX3X
CUX1ENSG00000257923.51024.77090844.006400.279903.065802.38570HepG2DNAJC2
CUX1ENSG00000257923.51894.569901168.286800.697405.732904.76640HepG2EIF4B
CUX1ENSG00000257923.51050.54380789.512300.412003.074402.12650HepG2GEMIN5
CUX1ENSG00000257923.5830.180601137.52890-0.454403.754502.95060HepG2HNRNPK
CUX1ENSG00000257923.51726.839201268.712600.444703.913703.17710HepG2HNRNPLL
CUX1ENSG00000257923.51139.37260949.837900.262402.569301.98520HepG2HNRNPU
CUX1ENSG00000257923.5797.60780970.22240-0.282602.949302.19470HepG2ILF2
CUX1ENSG00000257923.51616.896101148.215000.493703.328702.21690HepG2KHSRP
CUX1ENSG00000257923.5862.651601124.94760-0.383002.769602.02070HepG2NSUN2
CUX1ENSG00000257923.51539.39520964.740500.674104.018702.93620HepG2PABPC1
CUX1ENSG00000257923.51335.963201080.785300.305702.982002.35540HepG2PCBP1
CUX1ENSG00000257923.51225.296001019.061900.265802.641401.88340HepG2PRPF4
CUX1ENSG00000257923.51391.945701172.458400.247502.989502.37860HepG2PUM1
CUX1ENSG00000257923.51477.089201191.012300.310503.038002.38890HepG2QKI
CUX1ENSG00000257923.51368.493501657.42610-0.276402.472801.65810HepG2RBM15
CUX1ENSG00000257923.51655.063901388.311700.253502.350501.86290HepG2RBM22
CUX1ENSG00000257923.51419.644001080.945300.393103.861303.07490HepG2RBM25
CUX1ENSG00000257923.51112.81370862.878400.366903.036002.39620HepG2RPS19
CUX1ENSG00000257923.51468.073801059.027300.471108.864507.72110HepG2SLBP
CUX1ENSG00000257923.51263.09900986.375900.356705.237204.40050HepG2SMN1
CUX1ENSG00000257923.51395.451301008.108500.469002.889801.90990HepG2SMNDC1
CUX1ENSG00000257923.5945.651501397.27500-0.563203.307202.44900HepG2SNRNP70
CUX1ENSG00000257923.52373.238301568.038200.5978016.1111015.16440HepG2SRFBP1
CUX1ENSG00000257923.51011.492701195.09990-0.240602.122801.69280HepG2SRSF1
CUX1ENSG00000257923.51123.606901312.23400-0.223901.917501.32700HepG2SRSF7
CUX1ENSG00000257923.51558.51170972.297100.6806016.2983015.15950HepG2SRSF9
CUX1ENSG00000257923.51145.912401361.41320-0.248602.587402.08600HepG2SSB
CUX1ENSG00000257923.51468.175501240.218500.243302.837802.20980HepG2SUCLG1
CUX1ENSG00000257923.51280.21350922.823200.472205.639704.97500HepG2TIAL1
CUX1ENSG00000257923.51467.324301079.033600.443304.602503.44190HepG2TUFM
CUX1ENSG00000257923.51520.779701005.674400.5965013.5212012.22350HepG2ZC3H8
CUX1ENSG00000257923.51801.625801509.758400.254903.679703.07340HepG2ZNF622
CUX1ENSG00000257923.53572.386302907.176000.297204.600903.78840K562DDX47
CUX1ENSG00000257923.51760.398101165.889400.594403.600402.43870K562EIF3A
CUX1ENSG00000257923.52068.943401321.178700.647006.213804.57420K562EIF3D
CUX1ENSG00000257923.51377.98150863.201000.6747011.544709.89900K562EIF3G
CUX1ENSG00000257923.52136.079901420.237900.588707.937906.54600K562EIF4A3
CUX1ENSG00000257923.51634.641001279.007000.353804.146102.68240K562EIF4B
CUX1ENSG00000257923.53981.942403187.734200.320805.044203.79310K562EIF4G2
CUX1ENSG00000257923.52090.346102570.18940-0.298102.808702.04800K562GRSF1
CUX1ENSG00000257923.5879.812401174.78870-0.417103.060301.75780K562HNRNPK
CUX1ENSG00000257923.51219.992601611.78620-0.401802.885401.93230K562HNRNPM
CUX1ENSG00000257923.51547.570701176.101600.395902.512901.55050K562IGF2BP2
CUX1ENSG00000257923.51579.499001196.303400.400803.782802.34560K562IGF2BP3
CUX1ENSG00000257923.5895.304501197.62480-0.419702.846101.32800K562ILF3
CUX1ENSG00000257923.51595.435301236.157200.368003.479702.53210K562MAGOH
CUX1ENSG00000257923.51613.989001233.667700.387603.966602.84680K562MATR3
CUX1ENSG00000257923.51545.743501208.283200.355203.518801.98440K562PCBP1
CUX1ENSG00000257923.5911.109501200.95520-0.398503.108102.31240K562PRPF8
CUX1ENSG00000257923.52246.336102796.44580-0.316002.298501.79360K562PUS1
CUX1ENSG00000257923.51668.598901191.596400.485604.749303.81440K562TARDBP
CUX1ENSG00000257923.51512.284601149.421600.395704.130403.10020K562TIA1
CUX1ENSG00000257923.51423.155801127.855400.335402.650201.58470K562TRA2A
CUX1ENSG00000257923.5632.05500891.41980-0.496105.101004.01470K562U2AF2
CUX1ENSG00000257923.52364.735102695.68060-0.189002.337101.67400K562UPF1
CUX1ENSG00000257923.52827.860602295.243300.301002.667501.82290K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.





4 RBPs can affect the splicing of CUX1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECUX1ENSG00000257923.5chr7+101842081101842147101840219101840585101843350101843452-0.333000.002130.03847excludedK562SF3B4
SECUX1ENSG00000257923.5chr7+101671377101671425101559394101559505101713618101713697-0.084000.002530.04375excludedK562SF3B4
SECUX1ENSG00000257923.5chr7+101842081101842147101840219101840585101843350101843452-0.335000.000050.00337excludedK562HNRNPU
SECUX1ENSG00000257923.5chr7+1018100921018102071018018391018018881018137251018138300.108000.000340.00763includedK562HNRNPC
MXECUX1ENSG00000257923.5chr7+101671377101671425101713618101713697101559394101559505101740643101740781-0.172000.004240.048922includedK562DROSHA
MXECUX1ENSG00000257923.5chr7+1017136181017136971017406431017407811015593941015595051017476151017477390.057000.002590.040031includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CUX1 is not avaliable on ENCORE database.