CUX1

General Information

Gene Name : CUX1
Gene ID : ENSG00000257923.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CUX1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CUX1	ENSG00000257923.10	22.29	19.06	20.67	ENCSR000AEF
HepG2	CUX1	ENSG00000257923.10	18.68	17.06	17.87	ENCSR985KAT
K562	CUX1	ENSG00000257923.10	23.06	21.66	22.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CUX1 is not avaliable on ENCORE database.

Proteins bound to RNA

CUX1 RNA is bound by 66 proteins.

CanvasJS.com

eCLIP assay for CUX1 is not avaliable on ENCORE database.

66 proteins are bound to CUX1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	101503388	101503448	+	intron-Distal	6.88172	52.32606	K562	PTBP1
chr7	101469034	101469161	+	intron-Distal	5.84403	45.41983	K562	EIF4G2
chr7	101860092	101860216	+	intron-Distal	7.62443	44.23685	K562	AGGF1
chr7	101504048	101504144	+	intron-Distal	6.69650	42.40230	K562	PTBP1
chr7	101639942	101640050	+	intron-Distal	6.75732	41.35108	HepG2	PCBP2
chr7	101470579	101470651	+	intron-Distal	4.99273	39.21529	K562	PTBP1
chr7	101860231	101860350	+	intron-Distal	7.01442	30.15131	K562	AGGF1
chr7	101470579	101470599	+	intron-Distal	5.49962	29.99688	HepG2	PTBP1
chr7	101926407	101926526	+	3'-UTR	6.09611	29.06421	K562	PABPC4
chr7	101470599	101470635	+	intron-Distal	5.00065	28.16294	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 399 entries

eCLIP assay for CUX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CUX1 is not available on ENCORE database.
55 RBPs can affect the levels of CUX1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.

55 RBPs can affect the gene expression of CUX1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CUX1	ENSG00000257923.5	2373.23830	1568.03820	0.59780	16.11110	15.16440	HepG2	SRFBP1
CUX1	ENSG00000257923.5	1558.51170	972.29710	0.68060	16.29830	15.15950	HepG2	SRSF9
CUX1	ENSG00000257923.5	1520.77970	1005.67440	0.59650	13.52120	12.22350	HepG2	ZC3H8
CUX1	ENSG00000257923.5	1377.98150	863.20100	0.67470	11.54470	9.89900	K562	EIF3G
CUX1	ENSG00000257923.5	1468.07380	1059.02730	0.47110	8.86450	7.72110	HepG2	SLBP
CUX1	ENSG00000257923.5	2136.07990	1420.23790	0.58870	7.93790	6.54600	K562	EIF4A3
CUX1	ENSG00000257923.5	1496.93240	1085.17620	0.46400	6.01060	5.13220	HepG2	CELF1
CUX1	ENSG00000257923.5	1280.21350	922.82320	0.47220	5.63970	4.97500	HepG2	TIAL1
CUX1	ENSG00000257923.5	1894.56990	1168.28680	0.69740	5.73290	4.76640	HepG2	EIF4B
CUX1	ENSG00000257923.5	2068.94340	1321.17870	0.64700	6.21380	4.57420	K562	EIF3D
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 59 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.

4 RBPs can affect the splicing of CUX1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CUX1	ENSG00000257923.5	chr7	+	101842081	101842147			101840219	101840585	101843350	101843452	-0.33500	0.00005	0.00337	excluded	K562	HNRNPU
SE	CUX1	ENSG00000257923.5	chr7	+	101810092	101810207			101801839	101801888	101813725	101813830	0.10800	0.00034	0.00763	included	K562	HNRNPC
SE	CUX1	ENSG00000257923.5	chr7	+	101842081	101842147			101840219	101840585	101843350	101843452	-0.33300	0.00213	0.03847	excluded	K562	SF3B4
SE	CUX1	ENSG00000257923.5	chr7	+	101671377	101671425			101559394	101559505	101713618	101713697	-0.08400	0.00253	0.04375	excluded	K562	SF3B4
MXE	CUX1	ENSG00000257923.5	chr7	+	101713618	101713697	101740643	101740781	101559394	101559505	101747615	101747739	0.05700	0.00259	0.04003	1included	K562	SF3B4
MXE	CUX1	ENSG00000257923.5	chr7	+	101671377	101671425	101713618	101713697	101559394	101559505	101740643	101740781	-0.17200	0.00424	0.04892	2included	K562	DROSHA

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CUX1

General Information

Functions

Localization

Domains (AlphaFold: CUX1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CUX1 is not avaliable on ENCORE database.

66 proteins are bound to CUX1 RNA:

eCLIP assay for CUX1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.

55 RBPs can affect the gene expression of CUX1 :

The Knockdown/knockout RNA-Seq assay for CUX1 is not available on ENCORE database.

4 RBPs can affect the splicing of CUX1 :

The Knockdown/knockout RNA-Seq assay for CUX1 is not avaliable on ENCORE database.