CIRH1A

General Information

Gene Name       : CIRH1A
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CIRH1A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CIRH1A is not avaliable on ENCORE database.



Proteins bound to RNA
  • CIRH1A RNA is bound by 22 proteins.  







eCLIP assay for CIRH1A is not avaliable on ENCORE database.





22 proteins are bound to CIRH1A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166917056569170630+3'-UTR,5'-UTR,CDS,intron-Proximal4.108543.25089HepG2AQR
chr166917062369170791+3'-UTR,5'-UTR,CDS,intron-Proximal4.027453.02060K562LIN28B
chr166917371169173818+3'-UTR,CDS,intron-Proximal4.6014811.89033HepG2PPIG
chr166920108369201150+3'-UTR,CDS,intron-Distal,intron-Proximal4.846024.86944K562AQR
chr166917059469170667+3'-UTR,5'-UTR,CDS,intron-Proximal3.339754.97118HepG2U2AF2
chr166916739269167447+5'-UTR,CDS,intron-Distal,intron-Proximal3.142614.18806HepG2U2AF2
chr166916672069166796+5'-UTR,intron-Distal3.830483.83748HepG2XRN2
chr166916651769166597+5'-UTR,CDS,intron-Distal,intron-Proximal5.108848.29618HepG2NCBP2
chr166919113369191182+CDS,intron-Distal,intron-Proximal4.255578.11807HepG2PRPF8
chr166917369769173794+CDS,intron-Proximal3.5491015.41622HepG2BUD13
chr166918460169184655+CDS,intron-Proximal4.294905.05356HepG2PRPF8
chr166917178669171801+CDS,intron-Proximal4.688279.56266K562AQR
chr166918749269187585+CDS,intron-Proximal3.635916.80152K562YBX3
chr166919698469197043+CDS,intron-Proximal3.921887.93174K562YBX3
chr166917723869177298+CDS,intron-Proximal4.0574510.72269HepG2PPIG
chr166917711369177238+CDS5.0887716.24695HepG2PPIG
chr166919704369197082+CDS,intron-Proximal3.839326.64581K562YBX3
chr166917370669173782+CDS,intron-Proximal3.9292317.91123HepG2U2AF2
chr166917170269171745+CDS,intron-Proximal3.210353.60157HepG2GRWD1
chr166917170169171733+CDS,intron-Proximal3.652443.05161HepG2PPIG
chr166918984269189885+CDS,intron-Distal3.567343.27569HepG2BCLAF1
chr166917177169171839+CDS,intron-Proximal4.647445.52963HepG2PPIG
chr166917074769170790+CDS3.604447.91657HepG2PPIG
chr166917075669170819+CDS,intron-Proximal3.6633910.32587HepG2PRPF8
chr166919923669199408+CDS,intron-Distal,intron-Proximal5.011136.13324HepG2IGF2BP1
chr166917176969171857+CDS,intron-Proximal4.379488.03668HepG2BUD13
chr166917177669171831+CDS,intron-Proximal5.873297.02967HepG2PRPF8
chr166916660869166688+intron-Distal,intron-Proximal3.949443.70701HepG2PRPF4
chr166919114669191209+intron-Distal,intron-Proximal4.831154.09264K562AQR
chr166917650669176584+intron-Distal4.414774.53347HepG2SUGP2
chr166923957069239653+intron-Distal3.280443.83822HepG2PTBP1
chr166917617269176246+intron-Distal,intron-Proximal3.103606.59727HepG2SUGP2
chr166917188769171949+intron-Distal,intron-Proximal4.133904.84254HepG2TIA1
chr166917637069176418+intron-Distal4.111273.63454HepG2SUGP2
chr166919120469191256+intron-Distal,intron-Proximal4.176913.85435K562PRPF8
chr166917214669172174+intron-Distal5.1185427.80309HepG2HNRNPC
chr166917674469176854+intron-Distal5.5392111.06447HepG2PCBP2
chr166917629669176346+intron-Distal,intron-Proximal3.564724.33009HepG2SUGP2
chr166917677769176832+intron-Distal3.212093.84025HepG2SUGP2
chr166924601769246092+intron-Distal4.576834.40847HepG2PTBP1
chr166917188969171944+intron-Distal,intron-Proximal4.345033.55542HepG2TIAL1
chr166917217469172205+intron-Distal4.3718716.00157HepG2HNRNPC
chr166917516769175196+intron-Distal3.881213.16028HepG2SUGP2
chr166919120069191267+intron-Distal,intron-Proximal5.388537.88130HepG2U2AF2
chr166923201469232068+intron-Distal4.3816110.61900HepG2HNRNPC
chr166917539469175430+intron-Distal4.025973.86809HepG2SUGP2
chr166917645469176496+intron-Distal3.848023.39864HepG2SUGP2
chr166922501369225063+intron-Distal3.791294.99574K562TROVE2
chr166917600669176082+intron-Distal5.181927.34531HepG2SUGP2
chr166917180169171820+intron-Proximal5.6122710.04245K562AQR
chr166918481869184876+intron-Proximal4.903994.35676HepG2PRPF8
chr166918481269184876+intron-Proximal3.789803.17235HepG2HNRNPK
chr166919418869194234+intron-Proximal3.798783.05889HepG2SF3B4
chr166917182069171832+intron-Proximal5.6458210.04245K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CIRH1A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CIRH1A is not available on ENCORE database.

  • 101 RBPs can affect the levels of CIRH1A.  








The Knockdown/knockout RNA-Seq assay for CIRH1A is not available on ENCORE database.





101 RBPs can affect the gene expression of CIRH1A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CIRH1AENSG00000141076.131451.331401145.338200.341504.767404.00930HepG2ACO1
CIRH1AENSG00000141076.131490.135201150.712800.372805.052204.04170HepG2AKAP8L
CIRH1AENSG00000141076.132236.089101932.888600.210102.227501.59910HepG2AUH
CIRH1AENSG00000141076.13810.573101239.11420-0.612304.759403.60820HepG2BCLAF1
CIRH1AENSG00000141076.132048.476201479.492500.469305.111804.32870HepG2BOP1
CIRH1AENSG00000141076.131064.118601358.26050-0.352102.500701.84160HepG2CPSF6
CIRH1AENSG00000141076.132150.329901815.170100.244402.673602.04010HepG2CELF1
CIRH1AENSG00000141076.131415.204101951.79270-0.4638010.564609.26080HepG2DAZAP1
CIRH1AENSG00000141076.131018.260901238.07260-0.282001.983801.39720HepG2DDX21
CIRH1AENSG00000141076.131212.905001565.90060-0.368502.512701.91420HepG2DDX3X
CIRH1AENSG00000141076.13969.642401345.05570-0.472103.242102.57880HepG2DDX6
CIRH1AENSG00000141076.13852.418301095.77630-0.362304.037503.24890HepG2DKC1
CIRH1AENSG00000141076.131109.828701413.00730-0.348403.943103.11570HepG2DNAJC21
CIRH1AENSG00000141076.13952.541201400.53440-0.5561012.0676010.80790HepG2DNAJC2
CIRH1AENSG00000141076.13799.129701293.11930-0.694407.218906.29470HepG2EIF2S1
CIRH1AENSG00000141076.131165.19500910.835300.355202.602101.72210HepG2EIF3D
CIRH1AENSG00000141076.132534.340101925.529600.396305.925804.78220HepG2EIF4G1
CIRH1AENSG00000141076.131203.849901844.54010-0.615607.625206.30300HepG2EIF4G2
CIRH1AENSG00000141076.132746.347502219.114600.307404.773404.02270HepG2ETF1
CIRH1AENSG00000141076.13890.992101360.57660-0.610702.227601.32500HepG2FTO
CIRH1AENSG00000141076.131117.162001539.70990-0.462803.531002.81650HepG2GPKOW
CIRH1AENSG00000141076.13959.834501426.54430-0.571706.876405.92650HepG2HNRNPA1
CIRH1AENSG00000141076.131385.253002061.88250-0.5738012.8859011.49020HepG2HNRNPF
CIRH1AENSG00000141076.131016.732701469.37210-0.531305.013004.19200HepG2HNRNPLL
CIRH1AENSG00000141076.131248.973701576.27740-0.335804.536803.77690HepG2HNRNPU
CIRH1AENSG00000141076.131393.685302030.35660-0.542808.614807.40660HepG2IGF2BP1
CIRH1AENSG00000141076.131314.653801610.11500-0.292504.102503.22650HepG2ILF2
CIRH1AENSG00000141076.131003.070501367.46100-0.447102.710601.72020HepG2KHSRP
CIRH1AENSG00000141076.132308.984701450.363000.670707.038006.06700HepG2MATR3
CIRH1AENSG00000141076.13985.396201498.53390-0.604803.796002.64930HepG2MTPAP
CIRH1AENSG00000141076.131549.938601935.39150-0.320403.567402.70170HepG2NOL12
CIRH1AENSG00000141076.13783.045301302.86790-0.734508.994507.70390HepG2NSUN2
CIRH1AENSG00000141076.131036.483301322.15810-0.351202.256701.59940HepG2PABPC4
CIRH1AENSG00000141076.131079.082301405.91330-0.381704.587703.66160HepG2PPIL4
CIRH1AENSG00000141076.131720.347501442.451000.254102.738401.96760HepG2PRPF4
CIRH1AENSG00000141076.131465.903101847.48960-0.333803.041602.42180HepG2PUF60
CIRH1AENSG00000141076.131182.697201537.64910-0.378604.298103.54450HepG2QKI
CIRH1AENSG00000141076.13888.497801395.50750-0.651309.092407.92590HepG2RBM25
CIRH1AENSG00000141076.13941.554801270.35340-0.432102.184001.34250HepG2RPS10
CIRH1AENSG00000141076.131236.56150886.286600.480405.028204.22690HepG2RPS19
CIRH1AENSG00000141076.13923.016301403.74390-0.6049012.8004011.56610HepG2SAFB2
CIRH1AENSG00000141076.131131.44890889.520700.347002.464401.57530HepG2SERBP1
CIRH1AENSG00000141076.13976.475301454.39730-0.574806.167505.14850HepG2SF3B1
CIRH1AENSG00000141076.131144.927301478.16440-0.368604.918504.16600HepG2SF3B4
CIRH1AENSG00000141076.131289.559801771.42820-0.458009.364808.19520HepG2SLBP
CIRH1AENSG00000141076.132443.048002094.954000.221703.145002.62280HepG2SRFBP1
CIRH1AENSG00000141076.132148.288601542.876400.477509.523908.76530HepG2SRSF1
CIRH1AENSG00000141076.131407.595902025.76260-0.5252011.3415010.09620HepG2SRSF7
CIRH1AENSG00000141076.131067.828201255.20590-0.233202.336001.82000HepG2SRSF9
CIRH1AENSG00000141076.13851.584401395.67440-0.712706.261805.30480HepG2SUPV3L1
CIRH1AENSG00000141076.131132.064701432.14090-0.339202.538101.83930HepG2TARDBP
CIRH1AENSG00000141076.13959.766301531.64250-0.6743011.1946010.30750HepG2TIAL1
CIRH1AENSG00000141076.131238.435301545.34020-0.319404.234303.56570HepG2TRIM56
CIRH1AENSG00000141076.13891.979201357.09520-0.6054011.9504010.68320HepG2UPF1
CIRH1AENSG00000141076.132404.003401310.221400.8755031.1402029.46180HepG2UTP3
CIRH1AENSG00000141076.131049.259401373.88580-0.388902.351801.67920HepG2XRN2
CIRH1AENSG00000141076.133457.118901961.023600.8179016.7009013.91590K562AARS
CIRH1AENSG00000141076.131468.021402017.38560-0.458602.433201.89560K562AGGF1
CIRH1AENSG00000141076.131559.357202216.45560-0.507302.667901.70790K562AKAP8
CIRH1AENSG00000141076.131346.982902099.09600-0.640003.935703.15540K562AKAP8L
CIRH1AENSG00000141076.132353.136503578.32250-0.604702.843902.24850K562AQR
CIRH1AENSG00000141076.132048.328102436.38880-0.250302.699801.40720K562BCCIP
CIRH1AENSG00000141076.131830.095402354.61730-0.363605.674204.28170K562BCLAF1
CIRH1AENSG00000141076.131712.472402454.57080-0.519405.647304.39060K562BOP1
CIRH1AENSG00000141076.131231.335201531.96870-0.315202.299801.35550K562CCAR1
CIRH1AENSG00000141076.132026.298202609.98080-0.365203.986503.04590K562CPSF6
CIRH1AENSG00000141076.13809.896001137.56460-0.490105.029803.56650K562DDX3X
CIRH1AENSG00000141076.137561.676103638.398201.0553041.0702038.84370K562DDX47
CIRH1AENSG00000141076.132484.979403362.49850-0.436308.190707.05340K562EIF2S2
CIRH1AENSG00000141076.133515.550501558.316101.173707.304605.63200K562EIF3A
CIRH1AENSG00000141076.133963.847401521.429801.3814036.6650033.77960K562EIF3G
CIRH1AENSG00000141076.132143.714802639.76830-0.300303.010401.68820K562EXOSC5
CIRH1AENSG00000141076.133024.950703711.65000-0.295102.529601.71980K562FIP1L1
CIRH1AENSG00000141076.131895.913502655.46240-0.486105.451404.24310K562FMR1
CIRH1AENSG00000141076.131446.538002250.68700-0.637807.397905.82600K562FTO
CIRH1AENSG00000141076.132990.629301235.878001.2748054.4061051.93860K562FXR1
CIRH1AENSG00000141076.131494.234502491.94360-0.7379010.898609.29840K562GPKOW
CIRH1AENSG00000141076.133638.224304480.90640-0.300603.134602.33190K562GRSF1
CIRH1AENSG00000141076.13957.259901766.93890-0.884305.120803.29680K562HNRNPA2B1
CIRH1AENSG00000141076.132341.518001515.170200.627907.352805.25160K562HNRNPK
CIRH1AENSG00000141076.133841.011503053.029000.331102.395301.53270K562HNRNPM
CIRH1AENSG00000141076.131757.505402716.23900-0.6281010.071608.38700K562HNRNPU
CIRH1AENSG00000141076.131094.505301517.33430-0.471303.455302.26220K562IGF2BP2
CIRH1AENSG00000141076.131449.472502227.96400-0.620202.761401.93670K562KIF1C
CIRH1AENSG00000141076.131378.623202127.66700-0.626005.301803.95560K562KRR1
CIRH1AENSG00000141076.132343.842901594.430900.555703.225602.31150K562MAGOH
CIRH1AENSG00000141076.132389.597501591.161700.586609.074007.30310K562MATR3
CIRH1AENSG00000141076.131984.236802432.39210-0.293802.599601.75470K562METAP2
CIRH1AENSG00000141076.132174.759202935.31130-0.4327013.2259011.76430K562NSUN2
CIRH1AENSG00000141076.132046.795101418.607100.528806.461504.95120K562PCBP2
CIRH1AENSG00000141076.132547.942501977.614200.365503.362002.53210K562PRPF8
CIRH1AENSG00000141076.131346.172701924.13520-0.515306.354104.89670K562PSIP1
CIRH1AENSG00000141076.133182.532601549.106501.0386019.7984018.09810K562PTBP1
CIRH1AENSG00000141076.131302.885602082.33660-0.676503.902003.27280K562PUS1
CIRH1AENSG00000141076.131239.623002028.41830-0.710504.186303.47300K562RBM15
CIRH1AENSG00000141076.13790.131301142.41530-0.531905.886203.86210K562RBM25
CIRH1AENSG00000141076.13960.424801901.68220-0.985505.460903.09250K562RBM39
CIRH1AENSG00000141076.132357.369401563.052700.592707.081705.25760K562NELFE
CIRH1AENSG00000141076.133809.051902014.620000.9188014.1789012.30510K562RPS19
CIRH1AENSG00000141076.132406.769801085.564301.1486015.1458012.71680K562RPS3
CIRH1AENSG00000141076.133387.774902294.937500.561808.720906.86090K562SAFB
CIRH1AENSG00000141076.133127.211202372.647800.398303.960002.20470K562SDAD1
CIRH1AENSG00000141076.132124.717402896.21260-0.446908.536907.16260K562SF3A3
CIRH1AENSG00000141076.131420.921802369.72940-0.737908.699006.90270K562SF3B1
CIRH1AENSG00000141076.13807.955501252.32690-0.632309.184307.57680K562SF3B4
CIRH1AENSG00000141076.131340.044001687.48530-0.332602.632001.40240K562SLBP
CIRH1AENSG00000141076.132507.985801518.666500.7236013.7972012.21660K562SRSF1
CIRH1AENSG00000141076.131144.752801434.32940-0.325302.415401.44440K562SRSF5
CIRH1AENSG00000141076.131999.835102494.14930-0.318703.759102.38480K562SRSF7
CIRH1AENSG00000141076.131456.574001915.11080-0.394802.766401.75090K562SUPV3L1
CIRH1AENSG00000141076.134080.253802583.332500.6593014.2370012.37630K562SYNCRIP
CIRH1AENSG00000141076.133444.256204341.08490-0.333902.887401.46350K562TRIP6
CIRH1AENSG00000141076.132877.853403597.57090-0.322005.326303.55670K562TROVE2
CIRH1AENSG00000141076.131483.125502026.73240-0.450503.996302.74940K562UCHL5
CIRH1AENSG00000141076.132304.037303112.36270-0.433803.167102.40090K562UPF1
CIRH1AENSG00000141076.131159.773802110.65590-0.863805.024403.10240K562UTP18
CIRH1AENSG00000141076.131791.669602663.16700-0.571803.870802.82910K562WDR3
CIRH1AENSG00000141076.133177.969502769.270900.198502.702801.86540K562WDR43
CIRH1AENSG00000141076.133384.582801832.923000.884705.818203.32090K562XRCC6
CIRH1AENSG00000141076.132822.141304031.86630-0.514702.288801.51580K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CIRH1A is not available on ENCORE database.





14 RBPs can affect the splicing of CIRH1A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.093000.000570.01320excludedK562SF3B4
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.052000.000220.08687excludedK562SMNDC1
SECIRH1AENSG00000141076.13chr16+691882776918836069187486691875836918977369189896-0.066000.006830.09647excludedHepG2U2AF1
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.066000.000020.00133excludedK562AKAP8L
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.150000.000000.00000excludedK562AQR
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.128000.000000.00000excludedK562PUS1
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.074000.000330.02539excludedHepG2NCBP2
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.073000.002680.05055excludedK562U2AF1
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.074000.002170.03731excludedK562U2AF2
SECIRH1AENSG00000141076.13chr16+691882956918836069187486691875836918977369189896-0.090000.000000.00002excludedK562SF3B1
A3SSCIRH1AENSG00000141076.13chr16+6916732169167521691673606916752169166560691665920.141000.000000.00000longerK562AQR
A3SSCIRH1AENSG00000141076.13chr16+6917705869177292691770806917729269173727691738170.098000.000000.00000longerK562AQR
A5SSCIRH1AENSG00000141076.13chr16+6917170369171880691717036917178869173727691738170.070000.000030.01035longerHepG2NCBP2
A5SSCIRH1AENSG00000141076.13chr16+6917170369171880691717036917178869173727691738170.104000.000000.00067longerHepG2QKI
MXECIRH1AENSG00000141076.13chr16+6919425869194365691969856919708169190986691911436919924369199429-0.106000.004170.063222includedHepG2U2AF1
MXECIRH1AENSG00000141076.13chr16+69189773691898966919425869194365691874866918758369196985691970810.081000.000000.000001includedK562AQR
MXECIRH1AENSG00000141076.13chr16+6918829569188360691942586919436569187486691875836919698569197081-0.155000.000010.000092includedK562AQR
MXECIRH1AENSG00000141076.13chr16+6918829569188360691909866919114369187486691875836919425869194365-0.103000.002870.022582includedK562AQR
MXECIRH1AENSG00000141076.13chr16+6918977369189896691942586919436569188324691883606919698569197081-0.131000.000050.000682includedK562AQR
MXECIRH1AENSG00000141076.13chr16+6919425869194365691969856919708169190986691911436919924369199429-0.165000.000110.009452includedHepG2BCCIP
MXECIRH1AENSG00000141076.13chr16+6919425869194365691969856919708169190986691911436919924369199429-0.097000.000180.001922includedHepG2U2AF2
MXECIRH1AENSG00000141076.13chr16+6919698569197081691992436919942969194258691943656920097769201088-0.198000.014940.074662includedHepG2U2AF2
MXECIRH1AENSG00000141076.13chr16+6919924369199429692009776920108869196985691970816920272369202923-0.116000.000620.024422includedK562SBDS
MXECIRH1AENSG00000141076.13chr16+69196985691970816919924369199429691942586919436569200977692010880.091000.002550.081001includedK562SAFB
MXECIRH1AENSG00000141076.13chr16+6919698569197081691992436919942969194258691943656920097769201088-0.099000.000340.036082includedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CIRH1A is not avaliable on ENCORE database.