CIAO1

General Information

Gene Name : CIAO1
Gene ID : ENSG00000144021.2
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CIAO1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CIAO1	ENSG00000144021.2	31.69	37.96	34.83	ENCSR000AEF
HepG2	CIAO1	ENSG00000144021.2	100.59	90.97	95.78	ENCSR985KAT
K562	CIAO1	ENSG00000144021.2	68.06	69.72	68.89	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CIAO1 is not avaliable on ENCORE database.

Proteins bound to RNA

CIAO1 RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for CIAO1 is not avaliable on ENCORE database.

25 proteins are bound to CIAO1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	96932098	96932228	+	CDS,intron-Proximal	4.31728	19.17963	HepG2	DDX3X
chr2	96934217	96934317	+	CDS	3.89667	17.66512	HepG2	PPIG
chr2	96934935	96935021	+	CDS,intron-Proximal	4.41924	16.54943	HepG2	AQR
chr2	96934678	96934734	+	intron-Distal	4.18632	12.39827	HepG2	PRPF4
chr2	96932085	96932141	+	5'-UTR,CDS	3.88417	12.00587	K562	DDX3X
chr2	96932225	96932235	+	CDS,intron-Proximal	5.87691	11.46503	HepG2	PRPF8
chr2	96932027	96932224	+	5'-UTR,CDS	4.15980	10.65286	HepG2	RPS3
chr2	96934947	96935040	+	CDS,intron-Proximal	4.13658	10.56837	K562	SF3B4
chr2	96931985	96932085	+	5'-UTR	3.90537	10.26816	K562	DDX3X
chr2	96933018	96933109	+	CDS,intron-Distal,intron-Proximal	4.02821	9.65424	HepG2	BUD13
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 58 entries

eCLIP assay for CIAO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CIAO1 is not available on ENCORE database.
67 RBPs can affect the levels of CIAO1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CIAO1 is not available on ENCORE database.

67 RBPs can affect the gene expression of CIAO1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CIAO1	ENSG00000144021.2	4129.29440	2795.76650	0.56260	17.52170	16.46490	HepG2	SSB
CIAO1	ENSG00000144021.2	3197.87230	1777.71340	0.84700	11.96310	10.71280	HepG2	GPKOW
CIAO1	ENSG00000144021.2	4157.59830	2974.09270	0.48320	11.79600	10.55240	K562	DDX47
CIAO1	ENSG00000144021.2	2586.40910	1704.70020	0.60130	11.18960	10.30250	HepG2	TIAL1
CIAO1	ENSG00000144021.2	2059.53600	1351.38330	0.60780	10.51590	9.42220	K562	FXR1
CIAO1	ENSG00000144021.2	1378.11890	2667.30110	-0.95270	10.52140	9.22390	HepG2	EIF4B
CIAO1	ENSG00000144021.2	1318.79850	1826.52190	-0.46990	8.51250	7.58990	K562	AGGF1
CIAO1	ENSG00000144021.2	1892.51900	2547.00800	-0.42850	8.45730	7.49100	HepG2	PCBP1
CIAO1	ENSG00000144021.2	2488.87140	3220.03880	-0.37160	7.87650	7.15080	HepG2	SRFBP1
CIAO1	ENSG00000144021.2	1601.31770	2564.15490	-0.67920	7.64050	6.56090	HepG2	G3BP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CIAO1 is not available on ENCORE database.

33 RBPs can affect the splicing of CIAO1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CIAO1	ENSG00000144021.2	chr2	+	96935005	96935093	96934194	96934396	96936848	96937383	-0.07500	0.00008	excluded	HepG2	U2AF1
A3SS	CIAO1	ENSG00000144021.2	chr2	+	96933538	96933662	96933573	96933662	96933362	96933474	0.07500	0.00027	longer	K562	RBM22
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.25400	0.00000	included	K562	SF3B4
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.16600	0.00001	included	HepG2	PCBP2
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.10600	0.00023	included	HepG2	TIA1
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.27700	0.00000	included	HepG2	PRPF8
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.11500	0.00101	included	K562	PHF6
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.37700	0.00004	included	HepG2	FTO
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.17100	0.00000	included	HepG2	PCBP1
RI	CIAO1	ENSG00000144021.2	chr2	+	96934194	96935093	96934194	96934396	96935005	96935093	0.09100	0.00002	included	HepG2	QKI

Showing 1 to 10 of 41 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CIAO1

General Information

Functions

Localization

Domains (AlphaFold: CIAO1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CIAO1 is not avaliable on ENCORE database.

25 proteins are bound to CIAO1 RNA:

eCLIP assay for CIAO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CIAO1 is not available on ENCORE database.

67 RBPs can affect the gene expression of CIAO1 :

The Knockdown/knockout RNA-Seq assay for CIAO1 is not available on ENCORE database.

33 RBPs can affect the splicing of CIAO1 :

The Knockdown/knockout RNA-Seq assay for CIAO1 is not avaliable on ENCORE database.