CAPN10

General Information

Gene Name       : CAPN10
Gene ID             : ENSG00000142330.19
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CAPN10)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CAPN10ENSG00000142330.191.524.953.24ENCSR000AEF
HepG2CAPN10ENSG00000142330.1919.806.1012.95ENCSR985KAT
K562CAPN10ENSG00000142330.196.463.154.80ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CAPN10 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CAPN10 RNA is bound by 19 proteins.  







eCLIP assay for CAPN10 is not avaliable on ENCORE database.





19 proteins are bound to CAPN10 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2241535936241535975+3'-UTR,CDS,intron-Distal,intron-Proximal5.107526.03362HepG2AQR
chr2241537811241537878+3'-UTR,CDS,intron-Distal,intron-Proximal4.6636811.09609HepG2PRPF8
chr2241534072241534118+3'-UTR,CDS,intron-Distal3.816384.68902HepG2PPIG
chr2241537813241537870+3'-UTR,CDS,intron-Distal,intron-Proximal4.7845910.24966K562AQR
chr2241534702241534779+3'-UTR,CDS,intron-Distal,intron-Proximal4.4646517.15802HepG2PRPF8
chr2241535669241535755+3'-UTR,CDS,intron-Distal,intron-Proximal4.329278.45115HepG2SF3B4
chr2241533912241533971+3'-UTR,CDS,intron-Distal,intron-Proximal4.540485.32775HepG2SF3B4
chr2241545950241546028+3'-UTR,5'-UTR,intron-Distal3.214363.39415HepG2DDX3X
chr2241556698241556773+3'-UTR,5'-UTR3.057413.40321HepG2GRWD1
chr2241535875241535971+3'-UTR,CDS,intron-Distal,intron-Proximal3.525167.87154HepG2PPIG
chr2241538090241538131+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.308413.05161HepG2PPIG
chr2241536244241536294+3'-UTR,CDS,intron-Distal,intron-Proximal3.6473610.36846HepG2PRPF8
chr2241536258241536332+3'-UTR,CDS,intron-Distal,intron-Proximal3.152445.74131HepG2PPIG
chr2241545880241545929+3'-UTR,5'-UTR,intron-Distal4.430964.08604HepG2PPIG
chr2241537501241537511+3'-UTR,CDS,intron-Distal,intron-Proximal3.987558.17589HepG2PRPF8
chr2241537307241537360+3'-UTR,CDS,intron-Distal4.198996.92541HepG2PPIG
chr2241537813241537821+3'-UTR,CDS,intron-Distal,intron-Proximal4.271159.17937HepG2AQR
chr2241535937241535948+3'-UTR,CDS,intron-Distal,intron-Proximal4.4190223.38866HepG2PRPF8
chr2241536230241536312+3'-UTR,CDS,intron-Distal,intron-Proximal3.804703.39008HepG2AQR
chr2241534057241534116+3'-UTR,CDS,intron-Distal3.978893.25631HepG2PRPF4
chr2241545866241545950+3'-UTR,5'-UTR,intron-Distal3.276255.57370HepG2DDX3X
chr2241537779241537810+3'-UTR,CDS,intron-Distal4.663953.20743HepG2PPIG
chr2241545975241546019+3'-UTR,5'-UTR,intron-Distal3.437704.13746HepG2PPIG
chr2241526216241526316+5'-UTR3.337367.71508HepG2NCBP2
chr2241526234241526304+5'-UTR3.529165.30777HepG2PPIG
chr2241555860241555901+5'-UTR,CDS3.620143.16711HepG2DDX3X
chr2241555795241555854+5'-UTR,CDS,intron-Proximal3.207234.24993HepG2PPIG
chr2241528785241528884+CDS,intron-Distal4.076284.01763HepG2GRWD1
chr2241531529241531580+CDS,intron-Distal,intron-Proximal3.215894.68592HepG2PPIG
chr2241533321241533340+CDS,intron-Distal,intron-Proximal3.575513.59112HepG2PPIG
chr2241555809241555860+5'-UTR,CDS4.478247.63030HepG2DDX3X
chr2241530397241530467+CDS,intron-Distal,intron-Proximal3.015935.14343HepG2PPIG
chr2241555748241555819+5'-UTR,CDS,intron-Proximal3.478663.39008HepG2AQR
chr2241531552241531610+CDS,intron-Distal,intron-Proximal4.297846.23016HepG2PRPF8
chr2241533274241533380+CDS,intron-Distal,intron-Proximal3.371274.50387HepG2AQR
chr2241544970241545070+5'-UTR,intron-Distal,intron-Proximal4.925216.23935HepG2AQR
chr2241536647241536709+intron-Distal5.395637.24749HepG2EFTUD2
chr2241544932241544986+5'-UTR,intron-Distal4.0276311.34202HepG2DDX3X
chr2241553317241553337+intron-Distal8.13026165.65780HepG2QKI
chr2241547213241547305+intron-Distal5.4975711.57141HepG2PTBP1
chr2241553052241553068+intron-Distal7.6129342.42196HepG2QKI
chr2241531122241531161+intron-Distal5.056584.82195HepG2XPO5
chr2241553407241553474+intron-Distal4.955775.50068HepG2DDX59
chr2241553639241553706+intron-Distal8.2887385.29177HepG2QKI
chr2241553484241553491+intron-Distal6.7351796.38477HepG2QKI
chr2241553246241553269+intron-Distal8.50609151.20559HepG2QKI
chr2241553389241553581+intron-Distal7.0994622.14370K562QKI
chr2241553139241553194+intron-Distal8.36057157.18967HepG2QKI
chr2241553192241553364+intron-Distal5.9673511.47623HepG2PCBP2
chr2241552954241552985+intron-Distal6.7116755.65357HepG2QKI
chr2241553270241553316+intron-Distal8.51624217.65174HepG2QKI
chr2241545020241545093+intron-Distal,intron-Proximal4.505675.47493HepG2BUD13
chr2241553491241553505+intron-Distal6.7698376.72301HepG2QKI
chr2241553456241553484+intron-Distal8.14195186.95559HepG2QKI
chr2241553619241553639+intron-Distal8.0765674.72242HepG2QKI
chr2241535299241535345+intron-Distal,intron-Proximal5.230067.05392HepG2SF3B4
chr2241545032241545069+intron-Distal,intron-Proximal3.646714.71457HepG2PRPF8
chr2241552985241553050+intron-Distal8.71405100.43258HepG2QKI
chr2241553513241553630+intron-Distal4.395245.33511HepG2HNRNPK
chr2241530067241530124+intron-Distal4.960265.28062HepG2XPO5
chr2241553446241553456+intron-Distal8.53929166.06623HepG2QKI
chr2241548661241548706+intron-Distal4.265743.96879HepG2MATR3
chr2241553413241553440+intron-Distal9.34272148.53347HepG2QKI
chr2241535571241535640+intron-Distal,intron-Proximal3.030804.32589HepG2PPIG
chr2241553718241553768+intron-Distal6.7032947.11708HepG2QKI
chr2241537821241537855+intron-Distal,intron-Proximal5.4147312.85265HepG2AQR
chr2241537511241537548+intron-Distal,intron-Proximal4.7724811.09609HepG2PRPF8
chr2241553168241553362+intron-Distal7.2671119.57000K562QKI
chr2241553215241553230+intron-Distal9.14967124.75719HepG2QKI
chr2241552897241552954+intron-Distal6.2221359.33610HepG2QKI
chr2241553577241553619+intron-Distal9.82440203.20396HepG2QKI
chr2241534850241534913+intron-Distal3.471945.15168HepG2EFTUD2
chr2241533843241533915+intron-Distal,intron-Proximal5.2265112.96050HepG2XPO5
chr2241553366241553381+intron-Distal8.3543065.00438HepG2QKI
chr2241553198241553215+intron-Distal8.5712481.25783HepG2QKI
chr2241547231241547348+intron-Distal3.447585.72064HepG2MATR3
chr2241553067241553106+intron-Distal3.882384.25479HepG2PCBP2
chr2241549191241549248+intron-Distal3.485843.84025HepG2SUGP2
chr2241553230241553246+intron-Distal9.43421143.66664HepG2QKI
chr2241553440241553446+intron-Distal8.00704120.49992HepG2QKI
chr2241544886241544928+5'-UTR,intron-Distal3.739016.05537HepG2DDX3X
chr2241535948241535983+intron-Distal,intron-Proximal4.5641125.58181HepG2PRPF8
chr2241553528241553577+intron-Distal9.06602219.24894HepG2QKI
chr2241531056241531112+intron-Distal3.365275.42306HepG2XPO5
chr2241548469241548494+intron-Distal4.506824.80665HepG2QKI
chr2241548765241548812+intron-Distal3.798366.33688HepG2QKI
chr2241553381241553413+intron-Distal9.10857113.62135HepG2QKI
chr2241553068241553139+intron-Distal7.98821178.79580HepG2QKI
chr2241554371241554552+intron-Distal3.573825.35418HepG2FUBP3
chr2241553501241553671+intron-Distal5.1855210.86699HepG2PCBP2
chr2241553505241553528+intron-Distal7.8687498.94086HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CAPN10 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CAPN10 is not available on ENCORE database.

  • 69 RBPs can affect the levels of CAPN10.  








The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.





69 RBPs can affect the gene expression of CAPN10 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CAPN10ENSG00000142330.15216.17040297.48800-0.460702.170401.48190HepG2CALR
CAPN10ENSG00000142330.15300.07830188.404300.671404.527803.22490HepG2YBX3
CAPN10ENSG00000142330.15447.83700332.190900.430902.716502.07880HepG2CELF1
CAPN10ENSG00000142330.15464.62590357.147100.379502.929702.16980HepG2DAZAP1
CAPN10ENSG00000142330.15167.80710272.92030-0.701703.468502.43920HepG2DDX24
CAPN10ENSG00000142330.15308.30550184.993300.736805.508104.54570HepG2DNAJC21
CAPN10ENSG00000142330.15367.16160183.367901.0016012.0276010.77120HepG2DNAJC2
CAPN10ENSG00000142330.15154.06060256.79500-0.737103.438902.19520HepG2AGO1
CAPN10ENSG00000142330.15380.05090608.58530-0.679301.983801.43960HepG2EIF4A3
CAPN10ENSG00000142330.15457.66430337.553000.439102.583301.79510HepG2EIF4G2
CAPN10ENSG00000142330.15334.14360563.60880-0.754206.976005.76350HepG2FUBP3
CAPN10ENSG00000142330.15349.50160252.853100.466901.973701.42680HepG2GPKOW
CAPN10ENSG00000142330.15573.05250292.699000.969107.690105.32390HepG2HNRNPA0
CAPN10ENSG00000142330.15257.37410186.765700.462501.951101.39710HepG2HNRNPA1
CAPN10ENSG00000142330.15460.25170290.593500.663306.247305.22850HepG2HNRNPF
CAPN10ENSG00000142330.15553.31750325.321600.7661010.476609.24310HepG2HNRNPL
CAPN10ENSG00000142330.15396.89820206.371300.9434010.734509.60690HepG2HNRNPU
CAPN10ENSG00000142330.15284.76600210.801000.433802.483501.78530HepG2ILF2
CAPN10ENSG00000142330.15539.73010329.776100.710703.424502.07250HepG2KHDRBS1
CAPN10ENSG00000142330.15303.30110407.53320-0.426202.448801.30840HepG2NAA15
CAPN10ENSG00000142330.15339.42890228.923400.568102.884501.43590HepG2NIP7
CAPN10ENSG00000142330.15615.99600354.148400.798505.535404.46260HepG2NOL12
CAPN10ENSG00000142330.15225.9440087.124501.374707.403805.06650HepG2NOLC1
CAPN10ENSG00000142330.15623.35380316.062900.979706.346804.96600HepG2PABPC1
CAPN10ENSG00000142330.15702.18950587.287500.257701.856001.34180HepG2PCBP1
CAPN10ENSG00000142330.15398.81180184.066301.1154013.3659011.81670HepG2PPIL4
CAPN10ENSG00000142330.15580.11580338.076700.778907.943907.00300HepG2PUF60
CAPN10ENSG00000142330.15498.23860358.896200.473204.567503.84630HepG2PUM1
CAPN10ENSG00000142330.15850.93590636.584600.418603.931503.34250HepG2RBM22
CAPN10ENSG00000142330.15511.33660281.571500.860706.596705.39200HepG2RPS2
CAPN10ENSG00000142330.15501.67860347.489600.529702.121901.42080HepG2RPS3A
CAPN10ENSG00000142330.15417.07710287.453200.536902.559101.52740HepG2RPS5
CAPN10ENSG00000142330.15413.51110183.781201.1698014.6130013.30830HepG2SAFB2
CAPN10ENSG00000142330.15504.76960327.211100.625302.571301.30830HepG2SART3
CAPN10ENSG00000142330.15360.56690238.826400.594203.341802.57380HepG2SF3B1
CAPN10ENSG00000142330.15584.05810324.189300.8492012.8254011.50470HepG2SLBP
CAPN10ENSG00000142330.15329.71970214.317300.621404.846304.03340HepG2SMN1
CAPN10ENSG00000142330.15375.73130230.588300.704302.494401.58930HepG2SMNDC1
CAPN10ENSG00000142330.15956.29550718.979700.411404.463003.87040HepG2SRFBP1
CAPN10ENSG00000142330.15332.58500649.40490-0.9654014.0359013.14690HepG2SRSF1
CAPN10ENSG00000142330.15683.27680333.816901.0333018.3796016.96650HepG2SRSF5
CAPN10ENSG00000142330.15545.40930302.412300.850706.242404.53610HepG2STIP1
CAPN10ENSG00000142330.15652.22330379.628600.7807011.7396010.60880HepG2SUCLG1
CAPN10ENSG00000142330.15313.74060583.74400-0.895809.877608.92310HepG2TAF15
CAPN10ENSG00000142330.15312.63960204.983600.608902.373701.44430HepG2TFIP11
CAPN10ENSG00000142330.15415.05520200.518201.049503.101902.57750HepG2TIAL1
CAPN10ENSG00000142330.15453.17680202.321501.1633016.8050015.57290HepG2TRIM56
CAPN10ENSG00000142330.15575.52430330.307600.801008.463006.79780HepG2TUFM
CAPN10ENSG00000142330.15693.20070349.639300.987307.392805.99880HepG2UBE2L3
CAPN10ENSG00000142330.15345.18030180.653100.934006.372305.21410HepG2UCHL5
CAPN10ENSG00000142330.15515.75950311.269200.728404.322702.94780HepG2XPO5
CAPN10ENSG00000142330.15639.93320527.356100.279002.242101.73510HepG2ZNF622
CAPN10ENSG00000142330.15469.90070326.502300.525204.550703.85490K562AGGF1
CAPN10ENSG00000142330.15521.67810339.749700.618602.843502.18130K562AKAP8L
CAPN10ENSG00000142330.15305.86900438.56150-0.519902.655202.07750K562AQR
CAPN10ENSG00000142330.15207.82630124.420000.740103.662702.42240K562CSTF2
CAPN10ENSG00000142330.15424.48400573.70240-0.434602.954801.94790K562CELF1
CAPN10ENSG00000142330.15264.89310134.011200.983004.499903.31920K562EFTUD2
CAPN10ENSG00000142330.15357.62210254.858900.488603.071702.32080K562EIF2S2
CAPN10ENSG00000142330.1524.8676069.37680-1.480204.094003.19310K562G3BP2
CAPN10ENSG00000142330.15271.90980117.854301.206007.887405.82070K562IGF2BP2
CAPN10ENSG00000142330.15178.53510119.838700.575002.443001.34370K562IGF2BP3
CAPN10ENSG00000142330.15400.73380247.327900.696102.616801.66130K562PABPN1
CAPN10ENSG00000142330.15178.40090120.260100.568902.415001.78750K562PTBP1
CAPN10ENSG00000142330.15352.70240541.46130-0.618406.056804.42110K562PUM1
CAPN10ENSG00000142330.15649.60070336.872200.9473010.306109.30380K562PUS1
CAPN10ENSG00000142330.15450.17370328.286200.455403.319802.67950K562RBM15
CAPN10ENSG00000142330.15202.43980115.267700.812404.354803.26960K562RBM22
CAPN10ENSG00000142330.15141.59660257.74960-0.864203.946002.03960K562RPS3A
CAPN10ENSG00000142330.15149.1962072.070501.049605.354404.13880K562SF3B4
CAPN10ENSG00000142330.15199.12450117.904800.755903.656802.85020K562SRSF1
CAPN10ENSG00000142330.15220.24310111.376300.983604.617803.20050K562SRSF5
CAPN10ENSG00000142330.15269.18650119.306301.173809.040007.66320K562TARDBP
CAPN10ENSG00000142330.15227.23320115.089900.981306.268004.96220K562TIA1
CAPN10ENSG00000142330.15239.96870112.987201.086605.170503.58220K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CAPN10 is not available on ENCORE database.





3 RBPs can affect the splicing of CAPN10 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECAPN10ENSG00000142330.15chr2+2415353502415355692415344402415347212415357352415359380.258000.000440.03956includedHepG2TBRG4
SECAPN10ENSG00000142330.15chr2+2415353502415355692415344402415347212415357352415359380.481000.000840.02404includedK562AGGF1
A3SSCAPN10ENSG00000142330.15chr2+241536097241536359241536266241536359241535735241535938-0.369000.001040.04149shorterHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CAPN10 is not avaliable on ENCORE database.