ATG16L1

General Information

Gene Name : ATG16L1
Gene ID : ENSG00000085978.21
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATG16L1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATG16L1	ENSG00000085978.21	8.37	9.21	8.79	ENCSR000AEF
HepG2	ATG16L1	ENSG00000085978.21	36.16	29.71	32.94	ENCSR985KAT
K562	ATG16L1	ENSG00000085978.21	8.39	8.73	8.56	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATG16L1 is not avaliable on ENCORE database.

Proteins bound to RNA

ATG16L1 RNA is bound by 32 proteins.

CanvasJS.com

eCLIP assay for ATG16L1 is not avaliable on ENCORE database.

32 proteins are bound to ATG16L1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	234184567	234184572	+	intron-Distal	4.83986	400.00000	HepG2	SF3A3
chr2	234184526	234184530	+	intron-Distal	4.89515	400.00000	HepG2	SF3A3
chr2	234184530	234184540	+	intron-Distal	5.86803	400.00000	HepG2	DKC1
chr2	234184499	234184502	+	intron-Distal	6.35082	400.00000	HepG2	DKC1
chr2	234197416	234197418	+	intron-Distal	5.33063	400.00000	HepG2	DKC1
chr2	234184632	234184635	+	intron-Distal	5.75655	400.00000	HepG2	SMNDC1
chr2	234197405	234197413	+	intron-Distal	5.11501	400.00000	HepG2	NOLC1
chr2	234184568	234184577	+	intron-Distal	6.52060	400.00000	K562	SMNDC1
chr2	234184508	234184512	+	intron-Distal	5.49735	400.00000	HepG2	NOLC1
chr2	234184422	234184448	+	intron-Distal	4.77376	400.00000	HepG2	SF3A3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 274 entries

eCLIP assay for ATG16L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATG16L1 is not available on ENCORE database.
98 RBPs can affect the levels of ATG16L1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATG16L1 is not available on ENCORE database.

98 RBPs can affect the gene expression of ATG16L1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATG16L1	ENSG00000085978.17	3015.16400	1291.22320	1.22340	64.73550	63.14480	HepG2	SRFBP1
ATG16L1	ENSG00000085978.17	2382.53690	594.90640	2.00170	65.42790	62.94190	K562	AQR
ATG16L1	ENSG00000085978.17	1637.84910	697.33470	1.23180	47.83030	46.07370	HepG2	ACO1
ATG16L1	ENSG00000085978.17	3552.61410	645.79080	2.45960	42.52310	40.13930	HepG2	RAVER1
ATG16L1	ENSG00000085978.17	1771.76060	807.96830	1.13270	38.68130	37.36210	HepG2	SRSF1
ATG16L1	ENSG00000085978.17	2182.11030	1036.38330	1.07410	35.89180	34.11440	HepG2	CELF1
ATG16L1	ENSG00000085978.17	1593.61800	812.64210	0.97150	35.10840	33.72490	HepG2	ZNF622
ATG16L1	ENSG00000085978.17	2147.74740	813.01970	1.40140	24.28880	22.88380	HepG2	AKAP1
ATG16L1	ENSG00000085978.17	2086.42080	1143.20680	0.86780	23.31790	22.10970	HepG2	RBM22
ATG16L1	ENSG00000085978.17	1999.89290	777.23350	1.36340	23.36570	21.46460	HepG2	DDX55
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 106 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATG16L1 is not available on ENCORE database.

17 RBPs can affect the splicing of ATG16L1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATG16L1	ENSG00000085978.17	chr2	+	234182366	234182423	234181611	234181698	234183321	234183424	0.54400	0.00000	0.00000	included	HepG2	PTBP1
A5SS	ATG16L1	ENSG00000085978.17	chr2	+	234181611	234182423	234181611	234181698	234183321	234183424	0.47500	0.00000	0.00010	longer	HepG2	PTBP1
RI	ATG16L1	ENSG00000085978.17	chr2	+	234198499	234198999	234198499	234198620	234198893	234198999	0.45900	0.00000	0.00003	included	HepG2	G3BP1
SE	ATG16L1	ENSG00000085978.17	chr2	+	234182366	234182423	234181611	234181698	234183321	234183424	0.25200	0.00004	0.02162	included	K562	PUM1
A5SS	ATG16L1	ENSG00000085978.17	chr2	+	234181611	234182423	234181611	234181698	234183321	234183424	0.22400	0.00005	0.03944	longer	K562	PUM1
A5SS	ATG16L1	ENSG00000085978.17	chr2	+	234181611	234182423	234181611	234181698	234183321	234183424	0.24500	0.00006	0.06918	longer	K562	PUM2
A5SS	ATG16L1	ENSG00000085978.17	chr2	+	234181611	234182423	234181611	234181698	234183321	234183424	0.27000	0.00009	0.05487	longer	HepG2	DDX55
SE	ATG16L1	ENSG00000085978.17	chr2	+	234182366	234182423	234181611	234181698	234183321	234183424	0.56900	0.00012	0.03543	included	K562	SERBP1
A5SS	ATG16L1	ENSG00000085978.17	chr2	+	234181611	234182423	234181611	234181698	234183321	234183424	0.38100	0.00013	0.02614	longer	HepG2	MATR3
RI	ATG16L1	ENSG00000085978.17	chr2	+	234198499	234198999	234198499	234198620	234198893	234198999	0.41400	0.00014	0.00624	included	HepG2	FTO

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATG16L1

General Information

Functions

Localization

Domains (AlphaFold: ATG16L1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATG16L1 is not avaliable on ENCORE database.

32 proteins are bound to ATG16L1 RNA:

eCLIP assay for ATG16L1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATG16L1 is not available on ENCORE database.

98 RBPs can affect the gene expression of ATG16L1 :

The Knockdown/knockout RNA-Seq assay for ATG16L1 is not available on ENCORE database.

17 RBPs can affect the splicing of ATG16L1 :

The Knockdown/knockout RNA-Seq assay for ATG16L1 is not avaliable on ENCORE database.