ACBD4

General Information

Gene Name       : ACBD4
Gene ID             : ENSG00000181513.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: ACBD4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ACBD4ENSG00000181513.142.813.913.36ENCSR000AEF
HepG2ACBD4ENSG00000181513.1414.6410.0512.35ENCSR985KAT
K562ACBD4ENSG00000181513.143.913.123.52ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ACBD4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ACBD4 RNA is bound by 21 proteins.  







eCLIP assay for ACBD4 is not avaliable on ENCORE database.





21 proteins are bound to ACBD4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174322133943221472+3'-UTR3.942785.36498HepG2UPF1
chr174322131643221398+3'-UTR3.5877610.72776HepG2LSM11
chr174321443843214504+3'-UTR,CDS4.410649.56105HepG2PPIG
chr174322134343221408+3'-UTR3.6913912.11028HepG2XRN2
chr174322126643221426+3'-UTR5.5453710.41090K562UPF1
chr174321481243214892+3'-UTR,CDS,intron-Proximal5.027314.86944K562AQR
chr174321439043214438+3'-UTR,CDS4.517439.58174HepG2PPIG
chr174321476243214818+3'-UTR,CDS3.250977.61685HepG2PPIG
chr174322119143221249+3'-UTR4.576215.36376HepG2NKRF
chr174321516343215200+3'-UTR,CDS,intron-Proximal4.3710614.94352HepG2PPIG
chr174321516543215197+3'-UTR,CDS3.766913.01533HepG2SRSF1
chr174322141643221434+3'-UTR4.662755.89911HepG2NKRF
chr174321304943213155+5'-UTR,intron-Distal,intron-Proximal3.151049.16710HepG2NCBP2
chr174321406343214120+5'-UTR,CDS3.398136.47196HepG2BCLAF1
chr174321406043214139+5'-UTR,CDS3.8547612.12223HepG2PPIG
chr174321390643213965+CDS,intron-Distal,intron-Proximal3.356568.10600HepG2PPIG
chr174321384043213924+CDS,intron-Distal,intron-Proximal5.145825.17615K562AQR
chr174321356643213614+CDS,intron-Proximal3.366874.06531HepG2GRWD1
chr174321630043216428+CDS,intron-Distal,intron-Proximal4.024995.23469HepG2AQR
chr174321529343215362+CDS,intron-Proximal4.3892716.79588HepG2PPIG
chr174321527543215358+CDS,intron-Proximal3.580934.77403HepG2SRSF1
chr174321529443215318+CDS3.521638.19044HepG2GRWD1
chr174321386043213976+CDS,intron-Distal,intron-Proximal3.175065.81107HepG2GRWD1
chr174321527843215293+CDS,intron-Proximal3.8629310.93644HepG2PPIG
chr174321635543216440+CDS,intron-Distal,intron-Proximal5.556757.28294K562AQR
chr174321359643213633+CDS,intron-Proximal5.4535110.43516HepG2PRPF8
chr174321531843215350+CDS3.820497.03378HepG2GRWD1
chr174322062843220709+intron-Distal3.432875.40117HepG2DDX59
chr174321673943216786+intron-Distal4.112984.03786HepG2NKRF
chr174321369543213758+intron-Distal,intron-Proximal4.738117.37772HepG2EFTUD2
chr174321456843214644+intron-Distal,intron-Proximal6.030599.61799HepG2EFTUD2
chr174321735443217466+intron-Distal3.386854.60466HepG2ILF3
chr174321380743213866+intron-Distal,intron-Proximal6.156428.95096HepG2SF3A3
chr174321371443213838+intron-Distal,intron-Proximal3.441807.09239HepG2HNRNPK
chr174321795243217997+intron-Distal3.023743.40404HepG2ILF3
chr174321985243219891+intron-Distal,intron-Proximal4.134834.24441HepG2ILF3
chr174321806943218140+intron-Distal4.933848.42494HepG2ILF3
chr174322060643220724+intron-Distal,intron-Proximal3.117133.23438HepG2ILF3
chr174321897743218999+intron-Distal3.677083.12255HepG2XPO5
chr174321577843215835+intron-Distal3.859093.91876HepG2U2AF2
chr174321482143214929+intron-Distal,intron-Proximal4.8786113.67622HepG2EFTUD2
chr174322063543220694+intron-Distal3.517306.66494HepG2NKRF
chr174321899943219017+intron-Distal4.262053.60408HepG2XPO5
chr174322061743220735+intron-Distal,intron-Proximal3.332907.46558HepG2LSM11
chr174321379343213849+intron-Distal,intron-Proximal3.732566.46427HepG2SF3B4
chr174321468143214730+intron-Proximal5.593607.41664HepG2EFTUD2
chr174321416243214218+intron-Proximal5.345625.58036HepG2EFTUD2
chr174322071343220788+intron-Proximal3.529384.77549HepG2PABPN1
chr174321538543215424+intron-Proximal3.861224.71325HepG2RBM22
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ACBD4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ACBD4 is not available on ENCORE database.

  • 83 RBPs can affect the levels of ACBD4.  








The Knockdown/knockout RNA-Seq assay for ACBD4 is not available on ENCORE database.





83 RBPs can affect the gene expression of ACBD4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ACBD4ENSG00000181513.10219.19930411.01790-0.9070010.584809.55590HepG2ACO1
ACBD4ENSG00000181513.10370.58870497.00900-0.423501.914001.46210HepG2AKAP1
ACBD4ENSG00000181513.10435.38560587.80970-0.433103.348402.60550HepG2AUH
ACBD4ENSG00000181513.10267.08740353.57640-0.404701.969401.31000HepG2CALR
ACBD4ENSG00000181513.10655.23010482.900600.440202.194601.33540HepG2CCAR1
ACBD4ENSG00000181513.10246.95070390.69330-0.661803.998203.07760HepG2CIRBP
ACBD4ENSG00000181513.10442.44540246.249000.845306.712805.67780HepG2CPSF6
ACBD4ENSG00000181513.10187.13780314.72360-0.750003.794702.71240HepG2DDX24
ACBD4ENSG00000181513.10566.55940409.010500.470002.496701.90820HepG2DDX6
ACBD4ENSG00000181513.10376.69300281.249900.421402.479501.80980HepG2DNAJC21
ACBD4ENSG00000181513.10486.28860278.811400.8024010.531909.35730HepG2DNAJC2
ACBD4ENSG00000181513.10531.81550393.139600.435802.342401.79440HepG2EIF2S1
ACBD4ENSG00000181513.10584.01310406.636400.522203.494502.58760HepG2EIF4G2
ACBD4ENSG00000181513.10541.37370674.93870-0.318102.306801.74900HepG2ETF1
ACBD4ENSG00000181513.10268.73810401.61110-0.579604.035003.02700HepG2EWSR1
ACBD4ENSG00000181513.10524.87210396.239000.405502.364401.63520HepG2FUBP3
ACBD4ENSG00000181513.10386.47480279.136800.469302.161301.59190HepG2GPKOW
ACBD4ENSG00000181513.10429.73310283.944800.597703.952503.19940HepG2HNRNPA1
ACBD4ENSG00000181513.10427.07980315.851100.435202.287901.65230HepG2HNRNPC
ACBD4ENSG00000181513.10464.66330347.411000.419403.021602.27440HepG2HNRNPF
ACBD4ENSG00000181513.10533.74280411.861500.373901.943401.35190HepG2HNRNPK
ACBD4ENSG00000181513.10438.28380266.385900.718204.875604.06380HepG2HNRNPLL
ACBD4ENSG00000181513.10497.63660313.761800.665307.209106.26690HepG2HNRNPU
ACBD4ENSG00000181513.10502.11660342.100000.553504.308703.42190HepG2IGF2BP1
ACBD4ENSG00000181513.10439.57050320.494700.455703.726502.88810HepG2ILF2
ACBD4ENSG00000181513.10440.27970281.822200.643503.754702.32940HepG2KHDRBS1
ACBD4ENSG00000181513.10600.06050415.770500.529202.795101.78810HepG2KHSRP
ACBD4ENSG00000181513.10311.36910441.00390-0.502201.933301.40110HepG2MATR3
ACBD4ENSG00000181513.10441.11600271.691300.699103.514702.41360HepG2MTPAP
ACBD4ENSG00000181513.10541.10540426.703700.342602.032001.37590HepG2NOL12
ACBD4ENSG00000181513.10362.79990236.206200.619003.448102.61270HepG2NSUN2
ACBD4ENSG00000181513.10315.71700425.08810-0.429103.011802.38270HepG2PCBP1
ACBD4ENSG00000181513.10409.48050279.847800.549104.268903.37390HepG2PPIL4
ACBD4ENSG00000181513.1097.22890182.62550-0.909404.048303.09390HepG2PRPF8
ACBD4ENSG00000181513.10281.73790432.05020-0.616804.865603.98930HepG2PUM2
ACBD4ENSG00000181513.10600.37110418.644000.520005.561204.74360HepG2PUS1
ACBD4ENSG00000181513.10604.42600468.454200.367602.470601.87450HepG2QKI
ACBD4ENSG00000181513.1058.33170289.74420-2.3124016.6906015.10250HepG2RAVER1
ACBD4ENSG00000181513.10231.95700564.11250-1.2821019.8069018.68210HepG2RBM22
ACBD4ENSG00000181513.10410.14870296.973700.465702.030501.34540HepG2RPS3A
ACBD4ENSG00000181513.1084.55520180.64060-1.095205.247704.19750HepG2RRP9
ACBD4ENSG00000181513.10621.24440279.409901.1527016.3836015.00920HepG2SAFB2
ACBD4ENSG00000181513.10194.04830500.19850-1.3661013.1193011.58470HepG2SF3A3
ACBD4ENSG00000181513.10341.80220450.33270-0.397802.543701.97270HepG2SF3B4
ACBD4ENSG00000181513.10625.90250390.498400.680508.696307.56190HepG2SLBP
ACBD4ENSG00000181513.10421.23980282.448000.576603.031301.36760HepG2SND1
ACBD4ENSG00000181513.10276.63120637.12420-1.2036022.3890021.32100HepG2SRFBP1
ACBD4ENSG00000181513.10239.12210470.05030-0.9751011.3705010.55320HepG2SRSF1
ACBD4ENSG00000181513.10278.53220402.12980-0.529804.104003.36990HepG2SRSF5
ACBD4ENSG00000181513.10428.28840341.322300.327301.890201.30350HepG2SRSF7
ACBD4ENSG00000181513.10546.44910388.219400.493103.868002.88830HepG2TIA1
ACBD4ENSG00000181513.10385.08260304.822100.337101.771401.35270HepG2TIAL1
ACBD4ENSG00000181513.10457.90440307.607200.573905.392704.65650HepG2TRIM56
ACBD4ENSG00000181513.10213.21360492.10990-1.206703.473602.77470HepG2U2AF1
ACBD4ENSG00000181513.10310.74950428.27920-0.462803.231402.59290HepG2UTP3
ACBD4ENSG00000181513.10451.96170232.131700.961205.254904.26450HepG2XRN2
ACBD4ENSG00000181513.1063.48190131.37140-1.049204.058102.59810K562AARS
ACBD4ENSG00000181513.10195.02050280.19030-0.522802.801502.23010K562AGGF1
ACBD4ENSG00000181513.10121.40150206.91250-0.769203.022502.41430K562AQR
ACBD4ENSG00000181513.10138.4963079.046800.809002.865001.42000K562BUD13
ACBD4ENSG00000181513.10221.98270130.255500.769003.956502.64690K562CCAR1
ACBD4ENSG00000181513.10464.26790334.852600.471303.153501.88250K562CCDC124
ACBD4ENSG00000181513.10299.77200198.279800.596203.575102.19730K562DDX21
ACBD4ENSG00000181513.10144.69650201.74470-0.479502.062901.48640K562DDX47
ACBD4ENSG00000181513.10221.69640145.816500.604302.643601.34870K562DHX30
ACBD4ENSG00000181513.1090.97980155.27170-0.771203.218102.33600K562EIF4A3
ACBD4ENSG00000181513.10244.36840133.764200.869305.570903.73080K562EXOSC5
ACBD4ENSG00000181513.10193.1426081.581401.243307.846306.34420K562FIP1L1
ACBD4ENSG00000181513.1033.42130161.47610-2.2725016.7886015.41060K562FXR1
ACBD4ENSG00000181513.1022.7326067.76570-1.575804.338403.40970K562G3BP2
ACBD4ENSG00000181513.10232.74290140.163000.731503.389102.55440K562GRSF1
ACBD4ENSG00000181513.10199.33780128.306400.635502.569301.47660K562HNRNPF
ACBD4ENSG00000181513.10340.60530202.504500.750005.897504.58160K562HNRNPU
ACBD4ENSG00000181513.1071.43260118.11570-0.725502.718101.88660K562MAGOH
ACBD4ENSG00000181513.10251.43330346.62210-0.463202.533201.66890K562MBNL1
ACBD4ENSG00000181513.10261.75920173.095500.596603.443502.54480K562MTPAP
ACBD4ENSG00000181513.10335.66460192.305300.803507.198806.07750K562NSUN2
ACBD4ENSG00000181513.1057.35140115.47890-1.009704.062402.41090K562PCBP1
ACBD4ENSG00000181513.1060.60840105.08550-0.794002.239201.36380K562PCBP2
ACBD4ENSG00000181513.10154.2635092.624900.735803.049302.18210K562PPIG
ACBD4ENSG00000181513.1020.67190109.72840-2.408205.682604.60750K562PRPF8
ACBD4ENSG00000181513.1070.53460114.76010-0.702202.440201.81000K562PTBP1
ACBD4ENSG00000181513.10131.23220317.48810-1.2746010.731409.10920K562PUF60
ACBD4ENSG00000181513.10251.76660337.82120-0.424202.577001.54860K562PUM1
ACBD4ENSG00000181513.10200.61920289.15680-0.527402.080701.59730K562PUS1
ACBD4ENSG00000181513.10280.88390168.985800.733002.990601.41140K562SBDS
ACBD4ENSG00000181513.1047.98150130.90470-1.448007.410506.05330K562SYNCRIP
ACBD4ENSG00000181513.10165.92830109.828700.595202.265601.53210K562TIA1
ACBD4ENSG00000181513.10282.65400123.857401.190308.439106.73080K562TIAL1
ACBD4ENSG00000181513.10217.19540131.669200.722003.345402.28600K562TRIM56
ACBD4ENSG00000181513.10181.2630095.380800.926204.626702.70370K562TRIP6
ACBD4ENSG00000181513.1036.2911067.87430-0.903202.159601.45000K562U2AF2
ACBD4ENSG00000181513.10288.17190203.906900.498902.964202.21940K562UPF1
ACBD4ENSG00000181513.10282.25560174.474200.693904.361703.25350K562WDR3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ACBD4 is not available on ENCORE database.





20 RBPs can affect the splicing of ACBD4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEACBD4ENSG00000181513.10chr17+432143854321450643214058432141434321473443214821-0.136000.001760.07379excludedHepG2PCBP1
SEACBD4ENSG00000181513.10chr17+432134744321359943213208432133204321386643213987-0.274000.000020.00158excludedHepG2PCBP1
A3SSACBD4ENSG00000181513.10chr17+4321525843215355432152794321535543215088432151970.475000.000000.00015longerHepG2RBM22
RIACBD4ENSG00000181513.10chr17+432138664321414343213866432139874321405843214143-0.146000.000360.02845excludedK562PPIL4
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.160000.004420.06899includedHepG2PCBP2
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.161000.001600.01993includedHepG2SF3A3
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.263000.000060.00137includedHepG2SF3A3
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.141000.000110.00134includedHepG2U2AF2
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.113000.003170.08166includedHepG2MATR3
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.166000.000010.00041includedHepG2PCBP1
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.206000.000350.00665includedHepG2PCBP1
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.103000.000390.00603includedHepG2QKI
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.106000.000870.01058includedHepG2TAF15
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.139000.000400.00545includedHepG2U2AF1
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.226000.000100.00157includedHepG2U2AF1
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.157000.000970.02343includedHepG2KHSRP
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.187000.000380.02264includedHepG2HNRNPC
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.175000.000270.00736includedHepG2TIAL1
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.100000.001090.01516includedHepG2NCBP2
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.164000.000010.00017includedHepG2SF3B4
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.130000.007570.04927includedHepG2SF3B4
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.244000.000030.00070includedHepG2RBM22
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.093000.004510.04557includedHepG2HNRNPK
RIACBD4ENSG00000181513.10chr17+4321347443214143432134744321359943213866432141430.095000.000560.03510includedHepG2LARP4
RIACBD4ENSG00000181513.10chr17+4321386643214143432138664321398743214058432141430.093000.001980.07915includedHepG2LARP4
RIACBD4ENSG00000181513.10chr17+432134744321414343213474432135994321386643214143-0.262000.000340.03082excludedK562LARP4
MXEACBD4ENSG00000181513.10chr17+43213474432135994321386643213987432132084321332043214058432141430.287000.000020.001371includedHepG2MATR3
MXEACBD4ENSG00000181513.10chr17+43213474432135994321386643213987432132084321332043214058432141430.178000.001550.083501includedHepG2NOL12
MXEACBD4ENSG00000181513.10chr17+43213474432135994321386643213987432132084321332043214058432141430.212000.000370.028181includedHepG2AKAP1
MXEACBD4ENSG00000181513.10chr17+43213474432135994321386643213987432132084321332043214058432141430.193000.000570.036571includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ACBD4 is not avaliable on ENCORE database.