TMEM38A

General Information

Gene Name       : TMEM38A
Gene ID             : ENSG00000072954.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM38A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM38AENSG00000072954.67.238.427.83ENCSR000AEF
HepG2TMEM38AENSG00000072954.63.682.733.21ENCSR985KAT
K562TMEM38AENSG00000072954.61.740.521.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM38A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM38A RNA is bound by 1 proteins.  







eCLIP assay for TMEM38A is not avaliable on ENCORE database.





1 proteins are bound to TMEM38A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191677195816772038+5'-UTR,CDS3.832793.16310HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM38A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM38A is not available on ENCORE database.

  • 28 RBPs can affect the levels of TMEM38A.  








The Knockdown/knockout RNA-Seq assay for TMEM38A is not available on ENCORE database.





28 RBPs can affect the gene expression of TMEM38A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM38AENSG00000072954.293.34320176.40210-0.918303.504302.91440HepG2AKAP1
TMEM38AENSG00000072954.2132.39710251.22040-0.924103.090902.27940HepG2CNOT7
TMEM38AENSG00000072954.2206.57060116.124100.830905.305204.32490HepG2DAZAP1
TMEM38AENSG00000072954.2304.03810145.154301.066606.831805.89580HepG2DDX6
TMEM38AENSG00000072954.266.23480139.54490-1.075104.164803.44580HepG2EIF2S1
TMEM38AENSG00000072954.2100.94910154.21580-0.611301.918201.38160HepG2EIF4A3
TMEM38AENSG00000072954.247.4232084.62700-0.835502.413401.46660HepG2GNB2L1
TMEM38AENSG00000072954.222.7207054.03240-1.249802.376101.77910HepG2GPKOW
TMEM38AENSG00000072954.2311.27610207.363100.585902.744401.34860HepG2HNRNPAB
TMEM38AENSG00000072954.2116.6959072.021600.696201.907201.31950HepG2HNRNPC
TMEM38AENSG00000072954.260.27540137.68180-1.191702.471001.54880HepG2IGF2BP3
TMEM38AENSG00000072954.266.21540155.64480-1.233005.728804.79750HepG2MAGOH
TMEM38AENSG00000072954.287.15120160.20480-0.878303.348302.65330HepG2NCBP2
TMEM38AENSG00000072954.219.7455045.72200-1.211401.946301.31370HepG2NSUN2
TMEM38AENSG00000072954.286.26640167.32920-0.955804.967204.19060HepG2PCBP1
TMEM38AENSG00000072954.2198.29820109.921500.851104.388803.65840HepG2PUF60
TMEM38AENSG00000072954.2215.45540116.688800.884606.010005.20450HepG2PUM1
TMEM38AENSG00000072954.251.45520167.35260-1.7015010.645709.38200HepG2RBM25
TMEM38AENSG00000072954.2121.50350189.49110-0.641102.612502.08430HepG2NELFE
TMEM38AENSG00000072954.2102.1139064.044600.672901.809701.30200HepG2RPS19
TMEM38AENSG00000072954.2142.37590252.17480-0.824704.041003.07320HepG2RPS3A
TMEM38AENSG00000072954.294.80390185.02710-0.964704.801704.22250HepG2SRSF1
TMEM38AENSG00000072954.2178.61110108.534200.718603.488502.80060HepG2SRSF5
TMEM38AENSG00000072954.2138.8619077.923600.833403.156502.41860HepG2SRSF7
TMEM38AENSG00000072954.2267.06540166.337800.683004.338103.66000HepG2TAF15
TMEM38AENSG00000072954.2164.3128070.141201.228007.837306.96620HepG2TRIM56
TMEM38AENSG00000072954.228.4929088.25750-1.631104.948704.12230HepG2U2AF1
TMEM38AENSG00000072954.294.5645046.498801.024003.311602.48310HepG2UCHL5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM38A is not available on ENCORE database.






No RBPs affect the alternative splcing events of TMEM38A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TMEM38A is not avaliable on ENCORE database.