SPDYA

General Information

Gene Name : SPDYA
Gene ID : ENSG00000163806.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SPDYA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SPDYA	ENSG00000163806.15	0.00	0.09	0.04	ENCSR000AEF
HepG2	SPDYA	ENSG00000163806.15	0.10	0.06	0.08	ENCSR985KAT
K562	SPDYA	ENSG00000163806.15	0.07	0.03	0.05	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SPDYA is not avaliable on ENCORE database.

Proteins bound to RNA

SPDYA RNA is bound by 21 proteins.

eCLIP assay for SPDYA is not avaliable on ENCORE database.

21 proteins are bound to SPDYA RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	29023146	29023162	+	3'-UTR,intron-Distal	4.76330	24.40280	K562	TIA1
chr2	29025206	29025259	+	3'-UTR,intron-Distal	3.55560	7.14642	K562	FAM120A
chr2	29019397	29019469	+	intron-Distal	3.86676	6.73852	HepG2	SUGP2
chr2	29023248	29023257	+	3'-UTR,intron-Distal	3.94626	11.38215	K562	YBX3
chr2	29024953	29024999	+	3'-UTR,intron-Distal	3.57482	8.64357	K562	UPF1
chr2	29023846	29023883	+	3'-UTR,intron-Distal	4.05597	3.97692	K562	IGF2BP1
chr2	29020142	29020196	+	intron-Distal	4.93586	5.94008	HepG2	HNRNPM
chr2	29023708	29023740	+	3'-UTR,intron-Distal	4.12557	12.76523	K562	YBX3
chr2	29020514	29020565	+	intron-Distal	4.98901	15.47240	K562	EXOSC5
chr2	29020579	29020610	+	intron-Distal	4.93435	6.08869	K562	EXOSC5
chr2	29023357	29023416	+	3'-UTR,intron-Distal	3.77262	6.49446	K562	IGF2BP1
chr2	29018661	29018689	+	intron-Distal	4.89449	6.41216	K562	EXOSC5
chr2	29019817	29019882	+	intron-Distal	6.02776	16.32087	K562	EXOSC5
chr2	29023762	29023781	+	3'-UTR,intron-Distal	3.49442	8.21916	K562	YBX3
chr2	29023116	29023131	+	3'-UTR,intron-Distal	5.11315	16.57635	K562	TIA1
chr2	29020392	29020445	+	intron-Distal	4.49565	4.12480	HepG2	HNRNPM
chr2	29020118	29020198	+	intron-Distal	3.11119	3.42802	K562	HNRNPM
chr2	29019487	29019514	+	intron-Distal	5.60083	12.32698	K562	EXOSC5
chr2	29019391	29019450	+	intron-Distal	5.91697	12.65719	K562	EXOSC5
chr2	29019086	29019140	+	intron-Distal	3.90572	3.04182	K562	HNRNPM
chr2	29019669	29019730	+	intron-Distal	6.30150	17.99274	K562	EXOSC5
chr2	29023157	29023173	+	3'-UTR,intron-Distal	3.08041	3.08581	K562	HNRNPC
chr2	29018520	29018559	+	intron-Distal	5.11563	8.03988	K562	EXOSC5
chr2	29023839	29023893	+	3'-UTR,intron-Distal	4.66980	4.80693	HepG2	FUBP3
chr2	29022392	29022483	+	3'-UTR,intron-Distal	3.32813	7.62562	K562	IGF2BP1
chr2	29023131	29023146	+	3'-UTR,intron-Distal	5.57764	37.69214	K562	TIA1
chr2	29023257	29023303	+	3'-UTR,intron-Distal	3.21633	8.53177	K562	YBX3
chr2	29018187	29018235	+	intron-Distal	4.42206	8.51196	K562	EXOSC5
chr2	29020346	29020384	+	intron-Distal	5.31926	9.02435	K562	EXOSC5
chr2	29020382	29020430	+	intron-Distal	4.09269	3.24322	HepG2	MATR3
chr2	29018833	29018856	+	intron-Distal	3.67754	4.61282	K562	EXOSC5
chr2	29019541	29019590	+	intron-Distal	5.68697	12.98926	K562	EXOSC5
chr2	29025810	29025876	+	intron-Distal	3.90007	4.27913	HepG2	CSTF2
chr2	29020020	29020067	+	intron-Distal	4.58257	10.93796	K562	EXOSC5
chr2	29018378	29018415	+	intron-Distal	4.69627	5.12361	K562	EXOSC5
chr2	29025277	29025342	+	3'-UTR,intron-Distal	4.12661	13.95270	K562	FAM120A
chr2	29022536	29022602	+	3'-UTR,intron-Distal	5.53371	8.71274	HepG2	SUB1
chr2	29023112	29023159	+	3'-UTR,intron-Distal	3.22972	7.50187	K562	U2AF2
chr2	29023436	29023532	+	3'-UTR,intron-Distal	4.50087	3.84520	HepG2	TIA1
chr2	29023844	29023875	+	3'-UTR,intron-Distal	4.59766	3.98488	K562	TIA1
chr2	29020392	29020433	+	intron-Distal	5.97475	15.98900	K562	EXOSC5
chr2	29020290	29020324	+	intron-Distal	5.03067	7.06134	K562	EXOSC5
chr2	29023109	29023157	+	3'-UTR,intron-Distal	5.13313	9.04496	K562	HNRNPC
chr2	29023468	29023516	+	3'-UTR,intron-Distal	3.53002	5.64972	K562	TIA1
chr2	29025204	29025254	+	3'-UTR,intron-Distal	3.59045	8.27984	K562	UPF1
chr2	29025373	29025391	+	3'-UTR,intron-Distal	3.60248	4.14747	K562	FAM120A
chr2	29019640	29019669	+	intron-Distal	5.40032	8.04096	K562	EXOSC5
chr2	29019504	29019563	+	intron-Distal	4.35089	4.12480	HepG2	HNRNPM
chr2	29018904	29018977	+	intron-Distal	3.23348	5.35016	HepG2	SUGP2
chr2	29019655	29019729	+	intron-Distal	3.49613	3.10810	K562	HNRNPM
chr2	29023740	29023762	+	3'-UTR,intron-Distal	3.60633	12.00472	K562	YBX3
chr2	29020098	29020139	+	intron-Distal	5.97475	15.98693	K562	EXOSC5
chr2	29023122	29023194	+	3'-UTR,intron-Distal	3.59437	15.58578	K562	U2AF1
chr2	29018931	29018980	+	intron-Distal	5.76671	13.32155	K562	EXOSC5
chr2	29011510	29011600	+	CDS,intron-Proximal	3.24130	7.13168	HepG2	BCLAF1
chr2	29016710	29016766	+	CDS,intron-Proximal	3.46936	6.82255	HepG2	U2AF2
chr2	29016714	29016772	+	CDS,intron-Proximal	3.65324	5.93878	K562	U2AF2
chr2	29011501	29011589	+	CDS,intron-Proximal	4.46943	6.96160	K562	SF3B4
chr2	29011608	29011676	+	CDS,intron-Proximal	3.18972	3.07497	K562	SND1
chr2	29016734	29016866	+	CDS,intron-Proximal	3.00190	4.18718	K562	LIN28B
chr2	29006765	29006818	+	CDS,intron-Proximal	3.04145	7.10293	HepG2	BCLAF1
chr2	29011522	29011575	+	CDS,intron-Proximal	3.93564	6.16416	K562	SND1
chr2	29006820	29006846	+	CDS,intron-Proximal	4.33762	3.89826	HepG2	BCLAF1
chr2	29006819	29006885	+	CDS,intron-Proximal	5.10003	5.01842	HepG2	PRPF8
chr2	29006722	29006897	+	CDS,intron-Proximal	3.50064	7.98670	K562	SF3B4
chr2	29006769	29006812	+	CDS,intron-Proximal	3.34507	5.51367	HepG2	G3BP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SPDYA is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for SPDYA is not available on ENCORE database.
8 RBPs can affect the levels of SPDYA.

The Knockdown/knockout RNA-Seq assay for SPDYA is not available on ENCORE database.

8 RBPs can affect the gene expression of SPDYA :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SPDYA	ENSG00000163806.11	48.78210	12.80100	1.93000	4.32210	3.47950	HepG2	CPSF6
SPDYA	ENSG00000163806.11	18.71240	5.00090	1.90360	1.82510	1.30150	HepG2	QKI
SPDYA	ENSG00000163806.11	49.59790	6.52330	2.92650	6.06310	5.04580	HepG2	RAVER1
SPDYA	ENSG00000163806.11	30.29440	11.45010	1.40360	2.03660	1.57360	HepG2	RBM22
SPDYA	ENSG00000163806.11	37.34320	15.19850	1.29680	2.03890	1.45890	HepG2	SF3A3
SPDYA	ENSG00000163806.11	53.40960	12.93330	2.04590	5.23480	4.60590	HepG2	SRFBP1
SPDYA	ENSG00000163806.11	48.81550	7.06850	2.78780	5.96460	5.15970	K562	AQR
SPDYA	ENSG00000163806.11	43.37740	11.08320	1.96850	4.14040	3.49600	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SPDYA

General Information

Functions

Localization

Domains (AlphaFold: SPDYA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SPDYA is not avaliable on ENCORE database.

21 proteins are bound to SPDYA RNA:

eCLIP assay for SPDYA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SPDYA is not available on ENCORE database.

8 RBPs can affect the gene expression of SPDYA :

The Knockdown/knockout RNA-Seq assay for SPDYA is not available on ENCORE database.

No RBPs affect the alternative splcing events of SPDYA on ENCORE database.

The Knockdown/knockout RNA-Seq assay for SPDYA is not avaliable on ENCORE database.