RP11-578F21.12

General Information

Gene Name : RP11-578F21.12
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-578F21.12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-578F21.12 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-578F21.12 RNA is bound by 7 proteins.

eCLIP assay for RP11-578F21.12 is not avaliable on ENCORE database.

7 proteins are bound to RP11-578F21.12 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	29093715	29093775	+	intron-Distal	3.16793	4.26467	K562	UPF1
chr15	29088174	29088204	+	intron-Distal	4.55627	4.86249	K562	MTPAP
chr15	29087651	29087690	+	intron-Distal	3.46598	3.47697	K562	MTPAP
chr15	29088109	29088133	+	intron-Distal	4.43078	4.54052	K562	MTPAP
chr15	29087405	29087448	+	intron-Distal	3.76982	4.95734	K562	MTPAP
chr15	29077488	29077607	+	intron-Distal,intron-Proximal	4.17403	3.59941	K562	UCHL5
chr15	29087946	29087983	+	intron-Distal	4.41252	3.31335	K562	MTPAP
chr15	29090245	29090307	+	intron-Distal	3.47016	3.76460	HepG2	HNRNPL
chr15	29088381	29088452	+	intron-Distal	4.95172	19.51550	K562	MTPAP
chr15	29088383	29088435	+	intron-Distal	3.64433	3.76275	K562	PTBP1
chr15	29092805	29092856	+	intron-Distal	4.94556	5.26064	K562	AQR
chr15	29088724	29088772	+	intron-Distal	3.71602	5.55667	K562	MTPAP
chr15	29095899	29095964	+	intron-Distal	4.41041	3.69433	K562	UPF1
chr15	29078463	29078525	+	intron-Proximal	4.09887	3.77023	K562	ZNF622
chr15	29083830	29083943	+	intron-Proximal	3.26431	3.43213	K562	UCHL5
chr15	29091982	29092054	+	intron-Proximal	4.89579	5.26064	K562	AQR
chr15	29083833	29083924	+	intron-Proximal	3.09459	4.14618	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-578F21.12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-578F21.12 is not available on ENCORE database.
24 RBPs can affect the levels of RP11-578F21.12.

The Knockdown/knockout RNA-Seq assay for RP11-578F21.12 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-578F21.12 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-578F21.12	ENSG00000261377.1	15.04620	44.63800	-1.56890	3.50730	2.83660	HepG2	ACO1
RP11-578F21.12	ENSG00000261377.1	27.82730	64.89330	-1.22160	2.49850	1.99050	HepG2	AKAP1
RP11-578F21.12	ENSG00000261377.1	16.38000	44.84720	-1.45310	3.13520	2.32480	HepG2	AKAP8L
RP11-578F21.12	ENSG00000261377.1	24.98390	62.17260	-1.31530	3.01310	2.36400	HepG2	DDX3X
RP11-578F21.12	ENSG00000261377.1	15.08720	53.38470	-1.82310	3.99910	3.26770	HepG2	DDX6
RP11-578F21.12	ENSG00000261377.1	26.58040	9.85900	1.43070	1.90900	1.31350	HepG2	DNAJC21
RP11-578F21.12	ENSG00000261377.1	21.41950	51.34270	-1.26120	2.29960	1.75500	HepG2	EIF2S1
RP11-578F21.12	ENSG00000261377.1	18.34820	55.23380	-1.58990	3.10350	2.37860	HepG2	EIF4B
RP11-578F21.12	ENSG00000261377.1	14.52720	39.92480	-1.45850	2.50760	1.77090	HepG2	FIP1L1
RP11-578F21.12	ENSG00000261377.1	18.83580	53.73060	-1.51230	3.09310	2.35600	HepG2	HNRNPK
RP11-578F21.12	ENSG00000261377.1	9.52310	50.63670	-2.41070	3.38070	2.29320	HepG2	IGF2BP3
RP11-578F21.12	ENSG00000261377.1	22.53540	57.57150	-1.35320	2.72420	2.09720	HepG2	MATR3
RP11-578F21.12	ENSG00000261377.1	18.17340	46.75280	-1.36320	2.81480	2.26300	HepG2	PTBP1
RP11-578F21.12	ENSG00000261377.1	11.86420	31.15280	-1.39270	2.01950	1.55840	HepG2	RBM22
RP11-578F21.12	ENSG00000261377.1	20.08750	52.03730	-1.37330	2.96720	2.41010	HepG2	NELFE
RP11-578F21.12	ENSG00000261377.1	28.86760	9.79470	1.55930	2.30690	1.71020	HepG2	SAFB2
RP11-578F21.12	ENSG00000261377.1	15.17640	41.33620	-1.44560	2.94680	2.38110	HepG2	SRSF9
RP11-578F21.12	ENSG00000261377.1	173.93830	120.97370	0.52380	1.98050	1.42600	K562	AKAP8L
RP11-578F21.12	ENSG00000261377.1	59.77980	117.30910	-0.97260	2.72310	2.13880	K562	AQR
RP11-578F21.12	ENSG00000261377.1	46.74570	93.89770	-1.00630	3.34710	2.44910	K562	EIF4A3
RP11-578F21.12	ENSG00000261377.1	58.05310	97.64870	-0.75020	2.24330	1.68810	K562	FXR1
RP11-578F21.12	ENSG00000261377.1	183.12780	100.80390	0.86120	2.75080	1.87060	K562	NAA15
RP11-578F21.12	ENSG00000261377.1	246.22320	119.95670	1.03740	6.18640	5.41370	K562	PUS1
RP11-578F21.12	ENSG00000261377.1	182.65750	116.89300	0.64390	2.88970	2.28490	K562	RBM15
RP11-578F21.12	ENSG00000261377.1	52.44390	90.86790	-0.79300	2.31740	1.55290	K562	RBM22
RP11-578F21.12	ENSG00000261377.1	65.73620	124.15960	-0.91740	3.59450	2.67320	K562	SF3A3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-578F21.12 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-578F21.12 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A5SS	RP11-578F21.12	ENSG00000261377.1	chr15	+	29077525	29077719			29077525	29077606	29078421	29078524	0.16200	0.00422	0.06289	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-578F21.12

General Information

Functions

Localization

Domains (AlphaFold: RP11-578F21.12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-578F21.12 is not avaliable on ENCORE database.

7 proteins are bound to RP11-578F21.12 RNA:

eCLIP assay for RP11-578F21.12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-578F21.12 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-578F21.12 :

The Knockdown/knockout RNA-Seq assay for RP11-578F21.12 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-578F21.12 :

The Knockdown/knockout RNA-Seq assay for RP11-578F21.12 is not avaliable on ENCORE database.