RP11-12J10.3

General Information

Gene Name : RP11-12J10.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-12J10.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-12J10.3 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-12J10.3 RNA is bound by 32 proteins.

eCLIP assay for RP11-12J10.3 is not avaliable on ENCORE database.

32 proteins are bound to RP11-12J10.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	126370837	126370934	-	3'-UTR,CDS,intron-Distal	3.95776	4.04622	HepG2	GRWD1
chr10	126370427	126370536	-	3'-UTR,CDS,intron-Distal	4.63778	4.28365	K562	NOLC1
chr10	126370628	126370795	-	3'-UTR,CDS,intron-Distal	3.86589	4.71531	K562	NOLC1
chr10	126370317	126370382	-	3'-UTR,CDS,intron-Distal	4.90483	5.85529	K562	RBM15
chr10	126454112	126454183	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.37186	3.35169	HepG2	U2AF2
chr10	126454078	126454164	-	3'-UTR,CDS,intron-Distal	3.22345	3.32039	HepG2	PPIG
chr10	126477603	126477730	-	CDS,intron-Distal,intron-Proximal	3.39534	5.96568	HepG2	GRWD1
chr10	126480282	126480415	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.44178	4.73026	K562	SRSF1
chr10	126478849	126478904	-	CDS,intron-Distal	3.02949	5.85428	K562	DDX3X
chr10	126480281	126480340	-	CDS,intron-Distal,intron-Proximal	4.31317	5.05409	HepG2	NCBP2
chr10	126477605	126477727	-	CDS,intron-Distal,intron-Proximal	3.21209	6.28230	HepG2	PPIG
chr10	126480213	126480317	-	CDS,intron-Distal,intron-Proximal	3.23988	5.12722	K562	BUD13
chr10	126454054	126454126	-	3'-UTR,CDS,intron-Distal	5.05910	6.13315	HepG2	BCLAF1
chr10	126463283	126463352	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.38214	5.00488	K562	LIN28B
chr10	126477606	126477686	-	CDS,intron-Distal,intron-Proximal	3.92406	7.48534	K562	LIN28B
chr10	126477648	126477734	-	CDS,intron-Distal,intron-Proximal	3.32509	5.39278	K562	ZNF622
chr10	126480290	126480339	-	CDS,intron-Distal,intron-Proximal	4.46017	7.13477	K562	DDX3X
chr10	126448566	126448694	-	3'-UTR,intron-Distal,intron-Proximal	3.04906	7.78987	K562	KHSRP
chr10	126445798	126445868	-	intron-Distal	4.43374	3.87294	K562	TARDBP
chr10	126309976	126309987	-	3'-UTR,intron-Distal	3.10740	5.74118	K562	YBX3
chr10	126431933	126432035	-	intron-Distal	3.03248	3.71727	HepG2	NKRF
chr10	126445614	126445684	-	intron-Distal	4.21565	4.66266	K562	TARDBP
chr10	126428230	126428303	-	intron-Distal	3.67438	8.17775	HepG2	RBFOX2
chr10	126437104	126437170	-	intron-Distal	3.13130	3.93901	K562	KHSRP
chr10	126448255	126448376	-	3'-UTR,intron-Distal	3.99753	3.47043	HepG2	KHSRP
chr10	126432769	126432836	-	5'-UTR,intron-Distal	4.65953	5.35746	HepG2	DDX3X
chr10	126311430	126311503	-	3'-UTR,intron-Distal	3.97505	3.70195	HepG2	UPF1
chr10	126432345	126432411	-	intron-Distal	4.14368	4.03786	HepG2	NKRF
chr10	126358940	126359000	-	intron-Distal	3.18506	3.23466	HepG2	CSTF2T
chr10	126432207	126432266	-	intron-Distal	3.16608	3.72734	HepG2	CSTF2T
chr10	126478965	126479027	-	intron-Distal,intron-Proximal	4.14394	4.37030	K562	KHSRP
chr10	126479800	126479875	-	intron-Distal	4.50915	3.41584	HepG2	FAM120A
chr10	126423330	126423394	-	intron-Distal	4.36675	4.90578	HepG2	HNRNPM
chr10	126480339	126480403	-	CDS,intron-Distal,intron-Proximal	5.40693	8.43873	K562	DDX3X
chr10	126333958	126334021	-	intron-Distal	3.75216	3.06347	K562	NONO
chr10	126359824	126359956	-	intron-Distal	3.88800	4.14602	K562	FUS
chr10	126445930	126445982	-	intron-Distal	4.27841	8.23540	K562	TARDBP
chr10	126479798	126479910	-	intron-Distal	5.15466	10.14244	HepG2	PRPF4
chr10	126445613	126445668	-	intron-Distal	5.04155	5.14653	K562	EIF4G2
chr10	126350929	126351022	-	intron-Distal	3.77694	4.64795	K562	EIF4G2
chr10	126445704	126445777	-	intron-Distal	4.21700	9.22151	K562	EIF4G2
chr10	126308094	126308154	-	3'-UTR,intron-Distal	4.09514	6.36782	K562	UPF1
chr10	126431911	126431966	-	intron-Distal	4.21471	3.76710	K562	NONO
chr10	126416525	126416578	-	intron-Distal	3.48574	3.39857	HepG2	HNRNPM
chr10	126348859	126349061	-	intron-Distal	4.23916	3.30664	K562	NONO
chr10	126308087	126308148	-	3'-UTR,intron-Distal	5.47071	5.63073	HepG2	DDX55
chr10	126476249	126476310	-	intron-Distal	3.83285	7.55775	HepG2	U2AF2
chr10	126445804	126445855	-	intron-Distal	4.50948	3.94682	K562	EIF4G2
chr10	126358404	126358501	-	intron-Distal	5.76666	13.49443	HepG2	PCBP2
chr10	126359052	126359123	-	intron-Distal	4.52789	3.13028	HepG2	FAM120A
chr10	126466729	126466794	-	intron-Distal	3.81318	9.70596	K562	TARDBP
chr10	126479790	126479868	-	intron-Distal	3.54732	4.07684	K562	DROSHA
chr10	126479050	126479214	-	intron-Distal	3.37311	10.15825	K562	KHSRP
chr10	126445868	126445930	-	intron-Distal	5.05468	7.26804	K562	TARDBP
chr10	126476245	126476309	-	intron-Distal	3.61148	8.15261	K562	U2AF2
chr10	126476251	126476312	-	intron-Distal	3.50584	7.03189	K562	U2AF1
chr10	126358772	126358889	-	intron-Distal	4.12280	3.96304	K562	CSTF2T
chr10	126479787	126479874	-	intron-Distal	3.08656	4.95687	K562	CSTF2T
chr10	126309992	126310033	-	3'-UTR,intron-Distal	4.60046	5.25389	K562	UPF1
chr10	126445691	126445759	-	intron-Distal	5.19119	10.25043	K562	TARDBP
chr10	126431440	126431515	-	5'-UTR,intron-Distal	4.43678	5.40320	K562	NONO
chr10	126480244	126480292	-	intron-Distal	5.81979	10.48996	K562	AQR
chr10	126308499	126308620	-	3'-UTR,intron-Distal	3.13667	8.63173	K562	UPF1
chr10	126479059	126479177	-	intron-Distal	3.14701	3.04623	HepG2	KHSRP
chr10	126339137	126339311	-	intron-Distal	3.92710	4.18190	K562	FUS
chr10	126448281	126448302	-	3'-UTR,intron-Distal	3.44078	9.66830	K562	KHSRP
chr10	126466164	126466232	-	intron-Distal	3.12159	3.20171	HepG2	ILF3
chr10	126428238	126428313	-	intron-Distal	3.67997	3.06347	K562	NONO
chr10	126448302	126448384	-	3'-UTR,intron-Distal	3.52290	11.04913	K562	KHSRP
chr10	126457847	126457942	-	intron-Distal	4.91454	7.43163	HepG2	QKI
chr10	126364071	126364188	-	intron-Distal	4.04464	3.98553	K562	NONO
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-12J10.3 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for RP11-12J10.3 is not available on ENCORE database.
2 RBPs can affect the levels of RP11-12J10.3.

The Knockdown/knockout RNA-Seq assay for RP11-12J10.3 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-12J10.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-12J10.3	ENSG00000258539.1	2.50040	18.31380	-2.87270	2.65620	1.76970	K562	MBNL1
RP11-12J10.3	ENSG00000258539.1	38.61650	12.26650	1.65440	2.88190	1.77660	K562	SAFB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-12J10.3

General Information

Functions

Localization

Domains (AlphaFold: RP11-12J10.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-12J10.3 is not avaliable on ENCORE database.

32 proteins are bound to RP11-12J10.3 RNA:

eCLIP assay for RP11-12J10.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-12J10.3 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-12J10.3 :

The Knockdown/knockout RNA-Seq assay for RP11-12J10.3 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-12J10.3 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-12J10.3 is not avaliable on ENCORE database.