RP1-317E23.6

General Information

Gene Name : RP1-317E23.6
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP1-317E23.6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP1-317E23.6 is not avaliable on ENCORE database.

Proteins bound to RNA

RP1-317E23.6 RNA is bound by 27 proteins.

eCLIP assay for RP1-317E23.6 is not avaliable on ENCORE database.

27 proteins are bound to RP1-317E23.6 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	26150070	26150152	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.70071	4.13013	K562	SF3B4
chr1	26150189	26150239	+	3'-UTR,5'-UTR,CDS	3.38155	4.06757	K562	UCHL5
chr1	26149618	26149706	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	5.73267	19.62251	K562	AQR
chr1	26149609	26149709	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.69647	9.25254	HepG2	PRPF8
chr1	26150213	26150266	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.89122	6.95612	HepG2	PRPF8
chr1	26149508	26149620	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.41731	6.75993	K562	DDX3X
chr1	26150096	26150166	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.30505	3.89662	K562	BUD13
chr1	26150172	26150240	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.29553	6.98305	HepG2	PPIG
chr1	26150108	26150191	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.97385	10.58560	K562	AQR
chr1	26149621	26149750	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.48237	34.32234	HepG2	EFTUD2
chr1	26144364	26144523	+	3'-UTR,intron-Distal	3.22125	3.09748	HepG2	ILF3
chr1	26139087	26139135	+	intron-Distal,intron-Proximal	3.90868	4.47419	K562	AGGF1
chr1	26147676	26147795	+	intron-Distal	3.92155	4.33867	K562	FUS
chr1	26147690	26147775	+	intron-Distal	3.97345	9.16997	HepG2	HNRNPM
chr1	26147697	26147782	+	intron-Distal	4.40490	4.66266	K562	TARDBP
chr1	26144620	26144696	+	3'-UTR,intron-Distal	6.95987	31.17039	HepG2	PCBP2
chr1	26143253	26143306	+	3'-UTR,intron-Distal	3.82123	3.50232	K562	IGF2BP1
chr1	26144348	26144498	+	3'-UTR,intron-Distal	4.63569	20.42284	HepG2	PCBP2
chr1	26142677	26142745	+	3'-UTR,intron-Distal	4.25566	4.96452	K562	YBX3
chr1	26147513	26147584	+	intron-Distal,intron-Proximal	4.19369	3.88642	HepG2	TAF15
chr1	26143538	26143605	+	3'-UTR,intron-Distal	7.36939	43.86856	HepG2	PCBP2
chr1	26149632	26149734	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.40891	8.66247	K562	EFTUD2
chr1	26147740	26147842	+	intron-Distal	4.42414	5.01722	K562	CSTF2T
chr1	26147480	26147580	+	5'-UTR,intron-Distal,intron-Proximal	4.47050	4.69914	HepG2	FUS
chr1	26147034	26147119	+	5'-UTR,intron-Distal	4.27436	3.53896	K562	NONO
chr1	26143417	26143475	+	3'-UTR,intron-Distal	4.05326	3.74262	HepG2	LARP4
chr1	26144424	26144485	+	3'-UTR,intron-Distal	3.63616	3.14867	K562	DDX55
chr1	26143540	26143613	+	3'-UTR,intron-Distal	3.37957	4.49507	K562	ILF3
chr1	26143261	26143313	+	3'-UTR,intron-Distal	4.34436	4.00727	K562	IGF2BP2
chr1	26144423	26144492	+	3'-UTR,intron-Distal	5.14303	5.98124	HepG2	DDX55
chr1	26147724	26147796	+	intron-Distal	3.55150	3.92959	K562	TAF15
chr1	26143249	26143324	+	3'-UTR,intron-Distal	4.37275	5.91383	HepG2	DDX55
chr1	26144386	26144561	+	3'-UTR,intron-Distal	5.42700	12.17370	K562	PABPC4
chr1	26143050	26143126	+	3'-UTR,intron-Distal	3.78457	4.78882	K562	IGF2BP2
chr1	26139147	26139190	+	CDS,intron-Distal,intron-Proximal	4.59644	5.18780	K562	AGGF1
chr1	26144415	26144495	+	3'-UTR,intron-Distal	3.29883	4.48159	HepG2	LARP4
chr1	26148179	26148281	+	5'-UTR,intron-Distal	3.23921	3.45713	HepG2	PTBP1
chr1	26147472	26147579	+	5'-UTR,intron-Distal,intron-Proximal	3.22794	6.04937	HepG2	PRPF4
chr1	26143547	26143607	+	3'-UTR,intron-Distal	3.60828	9.54233	K562	PABPC4
chr1	26138682	26138736	+	intron-Distal	5.00012	5.63362	K562	AGGF1
chr1	26144575	26144656	+	3'-UTR,intron-Distal	4.38093	4.60160	HepG2	LARP4
chr1	26138682	26138745	+	intron-Distal	4.01409	3.80954	K562	HNRNPL
chr1	26143255	26143305	+	3'-UTR,intron-Distal	3.09256	6.01570	HepG2	LARP4
chr1	26138992	26139087	+	intron-Distal,intron-Proximal	4.50012	7.90174	K562	AGGF1
chr1	26143257	26143312	+	3'-UTR,intron-Distal	3.47497	3.85040	HepG2	IGF2BP1
chr1	26144230	26144288	+	3'-UTR,intron-Distal	4.01018	3.31330	K562	UPF1
chr1	26138011	26138064	+	CDS,intron-Proximal	4.64851	4.68690	HepG2	PRPF8
chr1	26138369	26138443	+	CDS,intron-Proximal	5.09990	7.88608	K562	AGGF1
chr1	26138367	26138427	+	CDS,intron-Proximal	5.31404	7.28294	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP1-317E23.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP1-317E23.6 is not available on ENCORE database.
2 RBPs can affect the levels of RP1-317E23.6.

The Knockdown/knockout RNA-Seq assay for RP1-317E23.6 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP1-317E23.6 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP1-317E23.6	ENSG00000255054.3	0.00000	16.33950	-99999.99999	2.50010	1.56760	HepG2	U2AF2
RP1-317E23.6	ENSG00000255054.3	0.00000	23.01730	-99999.99999	5.36770	2.42110	K562	FXR2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP1-317E23.6 is not available on ENCORE database.

5 RBPs can affect the splicing of RP1-317E23.6 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP1-317E23.6	ENSG00000255054.3	chr1	+	26149728	26149930	26149509	26149619	26150134	26150235	-0.06500	0.00152	0.02916	excluded	HepG2	U2AF1
SE	RP1-317E23.6	ENSG00000255054.3	chr1	+	26149728	26149930	26149509	26149619	26150134	26150235	0.19000	0.00000	0.00008	included	HepG2	DDX6
SE	RP1-317E23.6	ENSG00000255054.3	chr1	+	26149728	26149930	26149509	26149619	26150134	26150235	-0.07700	0.00005	0.00271	excluded	HepG2	SF3A3
SE	RP1-317E23.6	ENSG00000255054.3	chr1	+	26149728	26149930	26149509	26149619	26150134	26150235	0.07800	0.00071	0.03464	included	K562	HNRNPK
SE	RP1-317E23.6	ENSG00000255054.3	chr1	+	26149730	26149814	26149509	26149619	26150134	26150235	-0.07500	0.00252	0.07863	excluded	HepG2	HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP1-317E23.6

General Information

Functions

Localization

Domains (AlphaFold: RP1-317E23.6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP1-317E23.6 is not avaliable on ENCORE database.

27 proteins are bound to RP1-317E23.6 RNA:

eCLIP assay for RP1-317E23.6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP1-317E23.6 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP1-317E23.6 :

The Knockdown/knockout RNA-Seq assay for RP1-317E23.6 is not available on ENCORE database.

5 RBPs can affect the splicing of RP1-317E23.6 :

The Knockdown/knockout RNA-Seq assay for RP1-317E23.6 is not avaliable on ENCORE database.