RGPD5

General Information

Gene Name       : RGPD5
Gene ID             : ENSG00000015568.12
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RGPD5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RGPD5ENSG00000015568.121.701.251.48ENCSR000AEF
HepG2RGPD5ENSG00000015568.123.796.745.27ENCSR985KAT
K562RGPD5ENSG00000015568.120.083.381.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RGPD5 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on RGPD5 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RGPD5 is not avaliable on ENCORE database.






NO known proteins are bound to RGPD5 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for RGPD5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RGPD5 is not available on ENCORE database.

  • 21 RBPs can affect the levels of RGPD5.  








The Knockdown/knockout RNA-Seq assay for RGPD5 is not available on ENCORE database.





21 RBPs can affect the gene expression of RGPD5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RGPD5ENSG00000015568.8658.45380474.369000.473004.763503.71280HepG2EIF4G1
RGPD5ENSG00000015568.8234.42900525.73560-1.1652013.8045010.40420HepG2EXOSC5
RGPD5ENSG00000015568.8358.9648039.301303.191102.378101.64740HepG2FUBP3
RGPD5ENSG00000015568.8192.74320407.73220-1.080905.145703.21360HepG2HLTF
RGPD5ENSG00000015568.8544.63150352.783400.626405.154604.07690HepG2MSI2
RGPD5ENSG00000015568.8643.54170186.935301.783404.515702.20240HepG2PPIG
RGPD5ENSG00000015568.81022.08040331.191101.625706.332005.56910HepG2NELFE
RGPD5ENSG00000015568.8185.35770407.01280-1.134803.990603.19520HepG2RPLP0
RGPD5ENSG00000015568.8633.65740421.755100.587203.232202.50240HepG2SF3A3
RGPD5ENSG00000015568.858.18300429.67840-2.884604.184902.34020HepG2SFPQ
RGPD5ENSG00000015568.8667.93880323.395501.0463016.7010015.74670HepG2SRSF1
RGPD5ENSG00000015568.81087.35030290.689301.903202.500401.96390HepG2TAF15
RGPD5ENSG00000015568.8495.84760267.094500.892408.425006.97160HepG2TIA1
RGPD5ENSG00000015568.8742.03630372.852400.9928011.3014010.00910HepG2U2AF1
RGPD5ENSG00000015568.8699.61040411.365100.766007.604806.81450HepG2ZNF622
RGPD5ENSG00000015568.853.5666016.493001.699403.727302.28250K562ABCF1
RGPD5ENSG00000015568.873.4824020.942901.810805.656004.02660K562CPEB4
RGPD5ENSG00000015568.873.6476019.590501.910406.748005.02310K562HNRNPL
RGPD5ENSG00000015568.8116.381309.911903.553507.387103.95110K562HNRNPUL1
RGPD5ENSG00000015568.888.1187011.219502.9733013.0562011.22280K562SRPK2
RGPD5ENSG00000015568.865.620807.854303.0625010.660507.79320K562SRSF9
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RGPD5 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RGPD5 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RGPD5 is not avaliable on ENCORE database.