HNRNPA1L2

General Information

Gene Name       : HNRNPA1L2
Gene ID             : ENSG00000139675.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HNRNPA1L2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HNRNPA1L2ENSG00000139675.1211.688.159.91ENCSR000AEF
HepG2HNRNPA1L2ENSG00000139675.127.5411.689.61ENCSR985KAT
K562HNRNPA1L2ENSG00000139675.127.326.086.70ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: HNRNPA1L2HNRNPA1L2cell-free sampleReleased






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
HNRNPA1L2ENCAB000AWUARP40282_T100QC9624


  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
HNRNPA1L2HNRNPA1L2ReleasedENCODE4


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
HNRNPA1L2Product_ID: ARP40282_T100
Lot_ID: QC9624
Source: Aviva
Target Name: HNRNPA1L2-human		 hnRNPA1L2_aviva-1_WB_HeLa_Fu.png<br>Caption: Western blot analysis of lysates from HeLa cells using rabbit polyclonal to HNRNPA1L2








RNA Targets

  • eCLIP assay for HNRNPA1L2 is not avaliable on ENCORE database.


  • The binding motifs of HNRNPA1L2

    • Trulli

Proteins bound to RNA
  • HNRNPA1L2 RNA is bound by 4 proteins.  







eCLIP assay for HNRNPA1L2 is not avaliable on ENCORE database.





4 proteins are bound to HNRNPA1L2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr135321147053211571+3'-UTR3.554104.09885HepG2BCLAF1
chr135320967553209779+intron-Distal5.7496412.50513HepG2HNRNPL
chr135320620453206313+intron-Distal3.642793.11181HepG2CSTF2
chr135321554353215670+intron-Distal3.896103.41738HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HNRNPA1L2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HNRNPA1L2 is not available on ENCORE database.

  • 31 RBPs can affect the levels of HNRNPA1L2.  








The Knockdown/knockout RNA-Seq assay for HNRNPA1L2 is not available on ENCORE database.





31 RBPs can affect the gene expression of HNRNPA1L2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HNRNPA1L2ENSG00000139675.10198.79180270.34830-0.443601.853001.35510HepG2BOP1
HNRNPA1L2ENSG00000139675.10186.02350306.42420-0.720005.732404.72020HepG2DAZAP1
HNRNPA1L2ENSG00000139675.10306.50030169.638100.853305.143004.27230HepG2EIF4A3
HNRNPA1L2ENSG00000139675.10246.18350165.153200.575801.988701.39880HepG2EIF4B
HNRNPA1L2ENSG00000139675.10373.96550297.748100.328701.849301.33700HepG2ETF1
HNRNPA1L2ENSG00000139675.10336.09930233.697900.524102.219101.52560HepG2FIP1L1
HNRNPA1L2ENSG00000139675.10200.26410281.33470-0.490401.943501.40070HepG2GPKOW
HNRNPA1L2ENSG00000139675.10171.48620268.48380-0.646703.079202.41920HepG2HNRNPLL
HNRNPA1L2ENSG00000139675.10303.11490195.456000.632902.670501.47020HepG2PRPF6
HNRNPA1L2ENSG00000139675.10204.20150290.05400-0.506302.440001.87510HepG2PUF60
HNRNPA1L2ENSG00000139675.10217.79330307.90810-0.499503.248502.61700HepG2PUM1
HNRNPA1L2ENSG00000139675.10199.04210307.68140-0.628403.739502.96500HepG2PUM2
HNRNPA1L2ENSG00000139675.10212.21810147.385300.525902.160001.65320HepG2TAF15
HNRNPA1L2ENSG00000139675.10221.70630135.451700.710803.751202.78450HepG2TIA1
HNRNPA1L2ENSG00000139675.10116.24550185.33740-0.673001.952301.51710HepG2TIAL1
HNRNPA1L2ENSG00000139675.10332.04690199.983400.731404.438903.65220HepG2U2AF1
HNRNPA1L2ENSG00000139675.10252.73990348.96520-0.465402.715401.81110K562ATP5C1
HNRNPA1L2ENSG00000139675.10273.88360357.87410-0.385902.076501.32910K562DKC1
HNRNPA1L2ENSG00000139675.10260.05370185.312100.488802.215901.49800K562EIF3G
HNRNPA1L2ENSG00000139675.10562.96870426.762500.399503.509802.45330K562EIF4G2
HNRNPA1L2ENSG00000139675.10174.72180287.36540-0.717804.254503.18730K562FIP1L1
HNRNPA1L2ENSG00000139675.10169.47920255.26870-0.590902.847202.04060K562GPKOW
HNRNPA1L2ENSG00000139675.1085.56200182.88650-1.095906.531004.92700K562HNRNPA1
HNRNPA1L2ENSG00000139675.10271.80820168.831700.686903.751603.06900K562HNRNPC
HNRNPA1L2ENSG00000139675.10159.39800249.17510-0.644503.113002.18120K562METAP2
HNRNPA1L2ENSG00000139675.10207.06200275.78180-0.413502.157601.49030K562NSUN2
HNRNPA1L2ENSG00000139675.10210.71430326.20680-0.630503.868002.87420K562PPIG
HNRNPA1L2ENSG00000139675.10245.02110321.37080-0.391301.831301.33120K562RBM15
HNRNPA1L2ENSG00000139675.10250.03180165.275200.597102.487401.71450K562RPS19
HNRNPA1L2ENSG00000139675.10181.88500117.989600.624302.470301.45070K562SAFB
HNRNPA1L2ENSG00000139675.10235.06230344.86900-0.553002.928401.63730K562STAU1
HNRNPA1L2ENSG00000139675.10226.22480132.808900.768304.294603.26460K562SYNCRIP
HNRNPA1L2ENSG00000139675.10360.59440260.174200.470803.191602.28800K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HNRNPA1L2 is not available on ENCORE database.





6 RBPs can affect the splicing of HNRNPA1L2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEHNRNPA1L2ENSG00000139675.10chr13+5320335353203494532015725320171353206556532066290.785000.000110.03009includedK562HNRNPA1
SEHNRNPA1L2ENSG00000139675.10chr13+5320335353203494532015725320171353206556532066290.168000.000940.05741includedHepG2FTO
SEHNRNPA1L2ENSG00000139675.10chr13+5320335353203494532015725320171353206556532066290.522000.000280.02423includedHepG2HNRNPL
SEHNRNPA1L2ENSG00000139675.10chr13+5320335353203494532015725320171353206556532066290.562000.002780.05652includedHepG2SRSF1
MXEHNRNPA1L2ENSG00000139675.10chr13+5320335353203494532065565320662953201572532017135321143953211581-0.086000.002050.037002includedHepG2U2AF1
MXEHNRNPA1L2ENSG00000139675.10chr13+53203353532034945320655653206629532015725320171353211439532115810.314000.002560.041851includedK562PUS1
MXEHNRNPA1L2ENSG00000139675.10chr13+5320655653206629532114395321158153201572532017135321654053217919-0.459000.002920.090622includedHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for HNRNPA1L2 is not avaliable on ENCORE database.